Wall clock time and date at job start Tue Mar 31 2020 01:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51262 * 120.84941 * 2 1 4 4 C 1.53234 * 108.53917 * 128.92764 * 3 2 1 5 5 C 1.52956 * 109.40419 * 54.62280 * 4 3 2 6 6 C 1.50706 * 109.41152 * 176.29989 * 5 4 3 7 7 O 1.21276 * 120.00086 * 120.35017 * 6 5 4 8 8 N 1.34773 * 119.99754 * 300.35511 * 6 5 4 9 9 C 1.46495 * 119.99904 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47357 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.47393 * 299.99794 * 10 9 8 12 12 C 1.53007 * 109.47039 * 59.99553 * 10 9 8 13 13 C 1.53004 * 109.47432 * 179.97438 * 10 9 8 14 14 C 1.50701 * 109.47004 * 179.97438 * 13 10 9 15 15 H 1.07998 * 119.99998 * 0.02562 * 14 13 10 16 16 C 1.37876 * 119.99881 * 180.02562 * 14 13 10 17 17 N 1.31512 * 119.99981 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00214 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46984 * 90.00213 * 18 16 14 20 20 H 1.48501 * 109.47471 * 210.00086 * 18 16 14 21 21 H 1.48501 * 109.47228 * 330.00158 * 18 16 14 22 22 C 1.52960 * 109.81835 * 296.40343 * 5 4 3 23 23 C 1.51276 * 120.84804 * 180.27541 * 2 1 3 24 24 H 1.08005 * 119.99835 * 179.72030 * 1 2 3 25 25 H 1.07992 * 119.99731 * 359.72145 * 1 2 3 26 26 H 1.09007 * 109.62335 * 248.63908 * 3 2 1 27 27 H 1.08996 * 109.62750 * 9.20445 * 3 2 1 28 28 H 1.09002 * 109.47375 * 294.64440 * 4 3 2 29 29 H 1.08999 * 109.48358 * 174.60290 * 4 3 2 30 30 H 1.09002 * 109.41534 * 56.51334 * 5 4 3 31 31 H 0.96998 * 120.00428 * 359.97438 * 8 6 5 32 32 H 1.09006 * 109.47196 * 299.99672 * 9 8 6 33 33 H 1.09004 * 109.47664 * 59.99654 * 9 8 6 34 34 H 1.09006 * 109.46881 * 59.99617 * 11 10 9 35 35 H 1.08996 * 109.47376 * 179.97438 * 11 10 9 36 36 H 1.09004 * 109.46750 * 300.00030 * 11 10 9 37 37 H 1.08997 * 109.46801 * 60.00216 * 12 10 9 38 38 H 1.08996 * 109.47096 * 180.02562 * 12 10 9 39 39 H 1.08993 * 109.47426 * 300.00257 * 12 10 9 40 40 H 1.08999 * 109.47075 * 299.99855 * 13 10 9 41 41 H 1.08995 * 109.46497 * 60.00261 * 13 10 9 42 42 H 0.97006 * 120.00260 * 180.02562 * 17 16 14 43 43 H 1.09005 * 109.48090 * 303.61775 * 22 5 4 44 44 H 1.08998 * 109.49622 * 183.58621 * 22 5 4 45 45 H 1.09001 * 109.62477 * 350.79006 * 23 2 1 46 46 H 1.08996 * 109.62421 * 111.17059 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1192 1.2488 1.1302 5 6 3.9848 -0.0024 0.9725 6 6 5.0588 -0.0050 2.0297 7 8 5.1245 -0.9180 2.8252 8 7 5.9462 1.0075 2.0911 9 6 6.9906 1.0048 3.1184 10 6 7.8577 2.2563 2.9677 11 6 8.5057 2.2640 1.5817 12 6 6.9859 3.5033 3.1299 13 6 8.9481 2.2538 4.0410 14 6 9.8024 3.4863 3.8920 15 1 9.5887 4.2002 3.1103 16 6 10.8568 3.7025 4.7537 17 7 11.1172 2.8329 5.7053 18 14 11.9162 5.2298 4.5687 19 1 11.3457 6.3300 5.3868 20 1 13.2963 4.9339 5.0304 21 1 11.9489 5.6396 3.1417 22 6 3.1191 -1.2543 1.1242 23 6 2.0857 -1.2987 -0.0062 24 1 -0.5400 -0.9354 -0.0046 25 1 -0.5399 0.9352 0.0045 26 1 2.5945 1.4211 -0.9562 27 1 1.4034 2.1326 0.1642 28 1 2.6057 1.2169 2.0911 29 1 3.7509 2.1359 1.0846 30 1 4.4488 -0.0001 -0.0138 31 1 5.8939 1.7377 1.4547 32 1 6.5290 0.9990 4.1059 33 1 7.6120 0.1167 3.0027 34 1 7.7286 2.2660 0.8173 35 1 9.1230 3.1558 1.4742 36 1 9.1268 1.3756 1.4662 37 1 6.5243 3.4978 4.1172 38 1 7.6035 4.3949 3.0220 39 1 6.2089 3.5053 2.3655 40 1 8.4861 2.2487 5.0282 41 1 9.5691 1.3655 3.9257 42 1 11.8588 2.9851 6.3118 43 1 2.6057 -1.2270 2.0854 44 1 3.7506 -2.1414 1.0745 45 1 1.4034 -2.1335 0.1541 46 1 2.5918 -1.4183 -0.9642 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890945260.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:54 Heat of formation + Delta-G solvation = -80.256541 kcal Electronic energy + Delta-G solvation = -22202.114420 eV Core-core repulsion = 19089.537510 eV Total energy + Delta-G solvation = -3112.576910 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.28546 -39.20933 -38.29931 -35.27025 -34.14710 -33.48552 -31.93885 -29.19713 -28.32223 -27.95407 -26.89032 -24.86804 -23.83495 -22.77378 -21.08009 -19.84491 -19.25475 -18.37952 -18.05893 -16.91739 -16.43345 -16.41268 -15.70663 -15.60441 -15.34429 -14.99549 -14.77821 -14.44315 -14.37635 -14.25649 -13.93726 -13.80274 -13.43728 -13.21673 -12.86508 -12.72870 -12.58415 -12.53177 -12.34707 -12.33090 -12.22029 -11.97992 -11.93757 -11.54878 -11.52804 -11.13038 -11.07024 -10.88554 -10.64207 -10.51591 -10.04446 -9.85251 -8.14058 -6.22067 1.41744 1.42734 1.43191 1.53558 1.67100 2.25902 2.45399 3.20482 3.62754 3.73064 3.83373 3.99292 4.08234 4.12085 4.18201 4.23194 4.35554 4.42964 4.50338 4.64635 4.69605 4.72119 4.78111 4.84908 4.89731 4.97014 5.05643 5.08187 5.11486 5.13161 5.16860 5.21072 5.24818 5.36847 5.41453 5.48552 5.50569 5.54378 5.58316 5.80643 5.82343 5.89977 6.04187 6.30147 6.62079 6.93436 7.30353 7.45897 8.98594 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.039754 B = 0.003114 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.167726 B = 8988.849330 C = 9361.501601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 C -0.080 4.080 4 C -0.105 4.105 5 C -0.097 4.097 6 C 0.507 3.493 7 O -0.593 6.593 8 N -0.708 5.708 9 C 0.141 3.859 10 C -0.064 4.064 11 C -0.121 4.121 12 C -0.121 4.121 13 C 0.039 3.961 14 C -0.512 4.512 15 H 0.074 0.926 16 C -0.007 4.007 17 N -0.940 5.940 18 Si 0.959 3.041 19 H -0.276 1.276 20 H -0.290 1.290 21 H -0.258 1.258 22 C -0.094 4.094 23 C -0.081 4.081 24 H 0.100 0.900 25 H 0.105 0.895 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.122 0.878 31 H 0.413 0.587 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.056 0.944 39 H 0.072 0.928 40 H -0.016 1.016 41 H -0.016 1.016 42 H 0.259 0.741 43 H 0.049 0.951 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.580 -1.771 -16.283 25.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.133 4.133 3 C -0.117 4.117 4 C -0.143 4.143 5 C -0.118 4.118 6 C 0.295 3.705 7 O -0.474 6.474 8 N -0.360 5.360 9 C 0.016 3.984 10 C -0.064 4.064 11 C -0.179 4.179 12 C -0.178 4.178 13 C 0.001 3.999 14 C -0.550 4.550 15 H 0.092 0.908 16 C -0.203 4.203 17 N -0.581 5.581 18 Si 0.784 3.216 19 H -0.202 1.202 20 H -0.217 1.217 21 H -0.182 1.182 22 C -0.132 4.132 23 C -0.118 4.118 24 H 0.118 0.882 25 H 0.123 0.877 26 H 0.110 0.890 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.140 0.860 31 H 0.252 0.748 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.002 0.998 41 H 0.003 0.997 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.405 -2.430 -15.591 25.010 hybrid contribution 1.073 0.540 0.721 1.401 sum -18.332 -1.890 -14.869 23.680 Atomic orbital electron populations 1.23784 0.95024 1.02439 1.02478 1.22123 0.95419 0.96152 0.99578 1.20823 0.97138 0.94810 0.98923 1.21548 0.97319 0.95845 0.99547 1.21359 0.93841 0.98361 0.98195 1.21420 0.82550 0.80926 0.85597 1.90673 1.74841 1.37682 1.44184 1.46010 1.30524 1.25155 1.34324 1.21186 0.88665 0.97952 0.90575 1.20702 0.94914 0.93560 0.97273 1.21694 1.00080 1.01542 0.94536 1.21693 0.98463 0.97084 1.00607 1.18981 0.92644 0.95647 0.92590 1.21597 1.12299 1.06842 1.14307 0.90789 1.25969 0.99394 0.99695 0.95263 1.70128 1.30816 1.37794 1.19384 0.85531 0.77568 0.79451 0.79013 1.20154 1.21653 1.18198 1.21292 0.96712 0.96310 0.98864 1.20814 0.97065 0.95257 0.98658 0.88200 0.87696 0.89024 0.89981 0.92702 0.89577 0.85981 0.74825 0.93979 0.93898 0.90963 0.92524 0.94550 0.94595 0.92494 0.90949 0.99766 0.99727 0.93196 0.93219 0.92168 0.90697 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.59 13.99 67.78 0.95 -1.64 16 2 C -0.13 -1.83 5.35 -16.13 -0.09 -1.92 16 3 C -0.08 -0.93 6.03 30.10 0.18 -0.75 16 4 C -0.10 -1.58 5.14 30.66 0.16 -1.42 16 5 C -0.10 -1.80 2.42 -11.57 -0.03 -1.83 16 6 C 0.51 14.35 7.15 87.66 0.63 14.98 16 7 O -0.59 -22.78 15.94 -3.02 -0.05 -22.83 16 8 N -0.71 -18.96 4.83 -463.06 -2.23 -21.20 16 9 C 0.14 5.04 4.56 86.38 0.39 5.43 16 10 C -0.06 -2.39 0.54 -52.18 -0.03 -2.42 16 11 C -0.12 -3.97 8.05 71.98 0.58 -3.39 16 12 C -0.12 -3.97 8.05 71.98 0.58 -3.39 16 13 C 0.04 1.99 4.04 29.85 0.12 2.11 16 14 C -0.51 -27.35 7.65 25.60 0.20 -27.15 16 15 H 0.07 3.67 5.68 -2.91 -0.02 3.65 16 16 C -0.01 -0.37 5.46 84.65 0.46 0.10 16 17 N -0.94 -57.42 13.29 21.45 0.28 -57.13 16 18 Si 0.96 43.43 29.54 68.60 2.03 45.45 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 22 C -0.09 -1.87 4.54 30.66 0.14 -1.73 16 23 C -0.08 -1.16 6.03 30.11 0.18 -0.98 16 24 H 0.10 1.18 7.92 -2.91 -0.02 1.16 16 25 H 0.10 1.16 7.92 -2.91 -0.02 1.13 16 26 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.08 0.83 7.89 -2.39 -0.02 0.81 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.09 1.05 7.44 -2.39 -0.02 1.04 16 30 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.41 8.29 5.51 -92.71 -0.51 7.78 16 32 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.07 1.73 6.86 -2.38 -0.02 1.72 16 35 H 0.06 1.99 6.62 -2.39 -0.02 1.97 16 36 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 1.99 6.62 -2.39 -0.02 1.98 16 39 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 40 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 41 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 42 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 43 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 44 H 0.06 1.35 8.00 -2.39 -0.02 1.33 16 45 H 0.07 1.01 7.89 -2.39 -0.02 0.99 16 46 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -69.61 356.99 4.88 -64.74 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.42 Total: 14.97 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: 4.42 Total: -24.01 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -1.95 Total: -78.33 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.05 Total: -22.83 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -69.61 4.88 -64.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890945260.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.519 kcal (2) G-P(sol) polarization free energy of solvation -69.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds