Wall clock time and date at job start Tue Mar 31 2020 02:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.47162 * 2 1 4 4 H 1.08994 * 109.46839 * 177.96536 * 3 2 1 5 5 C 1.50701 * 109.46884 * 57.96582 * 3 2 1 6 6 H 1.08002 * 120.00093 * 239.99833 * 5 3 2 7 7 C 1.37880 * 120.00080 * 60.00197 * 5 3 2 8 8 N 1.31512 * 119.99647 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99794 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47262 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47134 * 120.00022 * 9 7 5 12 12 H 1.48502 * 109.46757 * 239.99389 * 9 7 5 13 13 N 1.46898 * 109.46964 * 297.96556 * 3 2 1 14 14 C 1.46899 * 111.00075 * 273.75092 * 13 3 2 15 15 C 1.50706 * 109.47130 * 174.76206 * 14 13 3 16 16 C 1.41381 * 126.57750 * 259.97617 * 15 14 13 17 17 C 1.34519 * 106.83731 * 180.02562 * 16 15 14 18 18 C 1.50698 * 125.78808 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.47324 * 60.00202 * 18 17 16 20 20 C 1.52996 * 109.47166 * 180.02562 * 18 17 16 21 21 C 1.53004 * 109.47207 * 300.00286 * 18 17 16 22 22 O 1.34298 * 108.41889 * 0.02562 * 17 16 15 23 23 C 1.34301 * 109.48015 * 359.97438 * 22 17 16 24 24 C 1.50698 * 125.78951 * 180.02562 * 23 22 17 25 25 H 1.09001 * 109.47105 * 294.45579 * 1 2 3 26 26 H 1.09008 * 109.46976 * 54.45086 * 1 2 3 27 27 H 1.08998 * 109.47272 * 174.45093 * 1 2 3 28 28 H 1.08996 * 109.47317 * 240.00325 * 2 1 3 29 29 H 1.08992 * 109.47329 * 119.99717 * 2 1 3 30 30 H 0.97007 * 119.99625 * 179.97438 * 8 7 5 31 31 H 1.00900 * 111.00033 * 149.79684 * 13 3 2 32 32 H 1.09001 * 109.47129 * 54.76137 * 14 13 3 33 33 H 1.08995 * 109.46917 * 294.76259 * 14 13 3 34 34 H 1.07996 * 126.58059 * 0.06044 * 16 15 14 35 35 H 1.09001 * 109.47036 * 59.99671 * 19 18 17 36 36 H 1.09001 * 109.47257 * 180.02562 * 19 18 17 37 37 H 1.09007 * 109.46710 * 300.00116 * 19 18 17 38 38 H 1.09005 * 109.47006 * 59.99826 * 20 18 17 39 39 H 1.09001 * 109.46908 * 179.97438 * 20 18 17 40 40 H 1.09002 * 109.47242 * 299.99799 * 20 18 17 41 41 H 1.08999 * 109.47346 * 59.99904 * 21 18 17 42 42 H 1.08995 * 109.47393 * 180.02562 * 21 18 17 43 43 H 1.09005 * 109.47006 * 300.00199 * 21 18 17 44 44 H 1.09006 * 109.47392 * 0.02732 * 24 23 22 45 45 H 1.09002 * 109.47331 * 120.02626 * 24 23 22 46 46 H 1.09003 * 109.47427 * 240.02567 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1294 1.4427 0.0365 5 6 1.4969 2.1674 1.2045 6 1 0.8798 3.0441 1.0743 7 6 1.7878 1.7112 2.4727 8 7 2.5389 0.6433 2.6312 9 14 1.1152 2.6101 3.9657 10 1 0.3053 3.7723 3.5204 11 1 0.2632 1.6865 4.7572 12 1 2.2429 3.0860 4.8065 13 7 1.5909 2.1207 -1.2233 14 6 2.5281 1.8857 -2.3298 15 6 1.9719 2.4861 -3.5953 16 6 1.3053 1.7954 -4.6333 17 6 0.9808 2.7104 -5.5645 18 6 0.2549 2.4343 -6.8559 19 6 -1.1198 1.8361 -6.5504 20 6 0.0817 3.7408 -7.6329 21 6 1.0661 1.4456 -7.6957 22 8 1.4136 3.9116 -5.1479 23 6 2.0152 3.7817 -3.9542 24 6 2.6336 4.8981 -3.1529 25 1 -0.3633 0.4254 0.9355 26 1 -0.3633 0.5975 -0.8362 27 1 -0.3634 -1.0228 -0.0994 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8899 30 1 2.7439 0.3226 3.5234 31 1 1.4616 3.1084 -1.0625 32 1 2.6669 0.8133 -2.4669 33 1 3.4869 2.3496 -2.0985 34 1 1.0963 0.7365 -4.6711 35 1 -1.6978 2.5404 -5.9521 36 1 -1.6447 1.6360 -7.4845 37 1 -0.9960 0.9052 -5.9969 38 1 1.0613 4.1667 -7.8506 39 1 -0.4430 3.5410 -8.5672 40 1 -0.4961 4.4455 -7.0348 41 1 1.1899 0.5148 -7.1423 42 1 0.5413 1.2463 -8.6300 43 1 2.0455 1.8718 -7.9133 44 1 2.5188 5.8388 -3.6914 45 1 2.1359 4.9700 -2.1858 46 1 3.6934 4.6930 -3.0016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893607553.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:04 Heat of formation + Delta-G solvation = -14.161893 kcal Electronic energy + Delta-G solvation = -22481.180013 eV Core-core repulsion = 19371.469181 eV Total energy + Delta-G solvation = -3109.710831 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.37512 -37.03945 -36.37886 -33.85351 -31.83585 -31.17112 -30.28535 -27.55601 -27.41098 -26.98676 -25.79599 -23.92352 -23.01070 -21.51627 -20.30350 -19.02131 -18.29722 -16.58481 -16.04983 -15.96619 -14.94019 -14.67370 -14.21913 -14.12855 -14.03295 -13.42992 -13.38351 -12.98029 -12.85438 -12.78804 -12.41773 -12.39557 -12.25844 -12.15443 -11.82822 -11.76226 -11.65628 -11.21036 -11.15154 -11.03388 -10.92802 -10.78338 -10.68270 -10.36263 -10.07412 -9.71386 -9.35228 -9.20192 -8.73678 -8.45688 -7.86080 -7.16016 -6.00395 -4.05462 2.01375 2.94427 3.11802 3.28908 3.37351 3.41171 4.41858 4.52131 4.71501 4.80108 5.07441 5.21497 5.30243 5.30894 5.42091 5.46066 5.53323 5.61694 5.66278 5.68094 5.68581 5.71617 5.72148 5.89233 5.94756 6.00024 6.09000 6.15487 6.26284 6.29989 6.47823 6.55919 6.64965 6.75805 6.89888 6.93102 7.28380 7.35313 7.51497 7.54323 7.77507 7.82501 7.87736 8.29424 8.43789 8.71069 9.04618 9.59279 11.05656 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026080 B = 0.003869 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.360953 B = 7235.688234 C = 7646.263334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.101 4.101 3 C 0.215 3.785 4 H 0.000 1.000 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.678 5.678 14 C 0.127 3.873 15 C -0.150 4.150 16 C -0.182 4.182 17 C -0.018 4.018 18 C 0.017 3.983 19 C -0.139 4.139 20 C -0.142 4.142 21 C -0.138 4.138 22 O -0.175 6.175 23 C -0.024 4.024 24 C -0.069 4.069 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.011 0.989 28 H 0.009 0.991 29 H 0.084 0.916 30 H 0.259 0.741 31 H 0.328 0.672 32 H 0.070 0.930 33 H 0.025 0.975 34 H 0.141 0.859 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.327 3.974 -18.268 18.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.139 4.139 3 C 0.107 3.893 4 H 0.018 0.982 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.309 5.309 14 C -0.002 4.002 15 C -0.152 4.152 16 C -0.202 4.202 17 C -0.068 4.068 18 C 0.017 3.983 19 C -0.196 4.196 20 C -0.199 4.199 21 C -0.195 4.195 22 O -0.072 6.072 23 C -0.074 4.074 24 C -0.126 4.126 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.030 0.970 28 H 0.028 0.972 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.146 0.854 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.159 0.841 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.105 0.895 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.698 3.606 -18.445 18.987 hybrid contribution 0.423 0.720 1.316 1.559 sum -2.275 4.325 -17.129 17.813 Atomic orbital electron populations 1.21433 0.97546 0.97055 1.01555 1.21411 0.95079 0.98227 0.99201 1.19142 0.93258 0.91690 0.85170 0.98240 1.21221 1.31467 1.11903 0.90336 0.92316 1.24879 0.95110 0.95019 0.98822 1.69904 1.37514 1.23126 1.22216 0.86541 0.78733 0.79808 0.82940 1.19781 1.21024 1.21170 1.60675 1.47304 1.16037 1.06913 1.20208 0.92843 0.99449 0.87713 1.20280 1.04022 0.92600 0.98305 1.21314 1.04233 1.00167 0.94486 1.22050 1.03939 0.82642 0.98136 1.19037 0.94246 0.96482 0.88508 1.21915 0.94553 1.01369 1.01795 1.21833 1.02260 0.96138 0.99665 1.21908 0.99798 0.98668 0.99172 1.83885 1.58817 1.32512 1.32026 1.22140 1.02465 0.96589 0.86214 1.20250 1.00244 0.94022 0.98084 0.93033 0.93397 0.96960 0.97222 0.89722 0.93058 0.85444 0.91154 0.95716 0.84150 0.92126 0.91860 0.91848 0.92292 0.92140 0.92167 0.91941 0.91805 0.92332 0.91213 0.89549 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 9.46 37.16 0.35 -2.39 16 2 C -0.10 -2.47 5.58 -26.73 -0.15 -2.62 16 3 C 0.21 5.36 2.30 -68.86 -0.16 5.20 16 4 H 0.00 0.00 7.84 -51.93 -0.41 -0.41 16 5 C -0.51 -13.68 7.34 -34.44 -0.25 -13.93 16 6 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -25.11 11.34 55.43 0.63 -24.48 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.68 -14.53 5.50 -109.22 -0.60 -15.13 16 14 C 0.13 2.41 5.67 -4.97 -0.03 2.38 16 15 C -0.15 -2.58 5.72 -104.74 -0.60 -3.18 16 16 C -0.18 -2.88 10.12 -39.70 -0.40 -3.28 16 17 C -0.02 -0.26 5.68 -35.62 -0.20 -0.46 16 18 C 0.02 0.19 0.92 -155.66 -0.14 0.04 16 19 C -0.14 -1.39 8.35 37.16 0.31 -1.08 16 20 C -0.14 -1.36 8.03 37.16 0.30 -1.07 16 21 C -0.14 -1.27 8.34 37.16 0.31 -0.96 16 22 O -0.17 -2.72 10.06 5.73 0.06 -2.66 16 23 C -0.02 -0.38 7.32 -35.63 -0.26 -0.64 16 24 C -0.07 -0.90 10.12 36.00 0.36 -0.53 16 25 H 0.05 1.27 7.37 -51.93 -0.38 0.88 16 26 H 0.05 1.08 7.50 -51.92 -0.39 0.69 16 27 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.01 0.21 7.43 -51.93 -0.39 -0.17 16 29 H 0.08 2.30 6.12 -51.93 -0.32 1.98 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.33 6.93 7.78 -39.29 -0.31 6.62 16 32 H 0.07 1.37 7.39 -51.93 -0.38 0.99 16 33 H 0.02 0.46 8.13 -51.93 -0.42 0.04 16 34 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.66 7.99 -51.92 -0.41 0.24 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.59 7.99 -51.93 -0.41 0.17 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.09 1.14 7.68 -51.93 -0.40 0.74 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -28.86 366.61 -8.47 -37.34 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -8.41 Total: 4.18 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -0.66 Total: -20.88 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.03 Total: -39.61 kcal Atomic # 8 Polarization: -2.72 SS G_CDS: 0.06 Total: -2.66 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.86 -8.47 -37.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893607553.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.176 kcal (2) G-P(sol) polarization free energy of solvation -28.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds