Wall clock time and date at job start Tue Mar 31 2020 02:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.47162 * 2 1 4 4 H 1.08994 * 109.46839 * 177.96536 * 3 2 1 5 5 C 1.50701 * 109.46884 * 57.96582 * 3 2 1 6 6 H 1.08002 * 120.00093 * 239.99833 * 5 3 2 7 7 C 1.37880 * 120.00080 * 60.00197 * 5 3 2 8 8 N 1.31512 * 119.99647 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99794 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47262 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47134 * 120.00022 * 9 7 5 12 12 H 1.48502 * 109.46757 * 239.99389 * 9 7 5 13 13 N 1.46898 * 109.46964 * 297.96556 * 3 2 1 14 14 C 1.46899 * 111.00075 * 273.75092 * 13 3 2 15 15 C 1.50706 * 109.47130 * 174.76206 * 14 13 3 16 16 C 1.41381 * 126.57750 * 259.97617 * 15 14 13 17 17 C 1.34519 * 106.83731 * 180.02562 * 16 15 14 18 18 C 1.50698 * 125.78808 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.47324 * 60.00202 * 18 17 16 20 20 C 1.52996 * 109.47166 * 180.02562 * 18 17 16 21 21 C 1.53004 * 109.47207 * 300.00286 * 18 17 16 22 22 O 1.34298 * 108.41889 * 0.02562 * 17 16 15 23 23 C 1.34301 * 109.48015 * 359.97438 * 22 17 16 24 24 C 1.50698 * 125.78951 * 180.02562 * 23 22 17 25 25 H 1.09001 * 109.47105 * 294.45579 * 1 2 3 26 26 H 1.09008 * 109.46976 * 54.45086 * 1 2 3 27 27 H 1.08998 * 109.47272 * 174.45093 * 1 2 3 28 28 H 1.08996 * 109.47317 * 240.00325 * 2 1 3 29 29 H 1.08992 * 109.47329 * 119.99717 * 2 1 3 30 30 H 0.97007 * 119.99625 * 179.97438 * 8 7 5 31 31 H 1.00900 * 111.00033 * 149.79684 * 13 3 2 32 32 H 1.09001 * 109.47129 * 54.76137 * 14 13 3 33 33 H 1.08995 * 109.46917 * 294.76259 * 14 13 3 34 34 H 1.07996 * 126.58059 * 0.06044 * 16 15 14 35 35 H 1.09001 * 109.47036 * 59.99671 * 19 18 17 36 36 H 1.09001 * 109.47257 * 180.02562 * 19 18 17 37 37 H 1.09007 * 109.46710 * 300.00116 * 19 18 17 38 38 H 1.09005 * 109.47006 * 59.99826 * 20 18 17 39 39 H 1.09001 * 109.46908 * 179.97438 * 20 18 17 40 40 H 1.09002 * 109.47242 * 299.99799 * 20 18 17 41 41 H 1.08999 * 109.47346 * 59.99904 * 21 18 17 42 42 H 1.08995 * 109.47393 * 180.02562 * 21 18 17 43 43 H 1.09005 * 109.47006 * 300.00199 * 21 18 17 44 44 H 1.09006 * 109.47392 * 0.02732 * 24 23 22 45 45 H 1.09002 * 109.47331 * 120.02626 * 24 23 22 46 46 H 1.09003 * 109.47427 * 240.02567 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1294 1.4427 0.0365 5 6 1.4969 2.1674 1.2045 6 1 0.8798 3.0441 1.0743 7 6 1.7878 1.7112 2.4727 8 7 2.5389 0.6433 2.6312 9 14 1.1152 2.6101 3.9657 10 1 0.3053 3.7723 3.5204 11 1 0.2632 1.6865 4.7572 12 1 2.2429 3.0860 4.8065 13 7 1.5909 2.1207 -1.2233 14 6 2.5281 1.8857 -2.3298 15 6 1.9719 2.4861 -3.5953 16 6 1.3053 1.7954 -4.6333 17 6 0.9808 2.7104 -5.5645 18 6 0.2549 2.4343 -6.8559 19 6 -1.1198 1.8361 -6.5504 20 6 0.0817 3.7408 -7.6329 21 6 1.0661 1.4456 -7.6957 22 8 1.4136 3.9116 -5.1479 23 6 2.0152 3.7817 -3.9542 24 6 2.6336 4.8981 -3.1529 25 1 -0.3633 0.4254 0.9355 26 1 -0.3633 0.5975 -0.8362 27 1 -0.3634 -1.0228 -0.0994 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8899 30 1 2.7439 0.3226 3.5234 31 1 1.4616 3.1084 -1.0625 32 1 2.6669 0.8133 -2.4669 33 1 3.4869 2.3496 -2.0985 34 1 1.0963 0.7365 -4.6711 35 1 -1.6978 2.5404 -5.9521 36 1 -1.6447 1.6360 -7.4845 37 1 -0.9960 0.9052 -5.9969 38 1 1.0613 4.1667 -7.8506 39 1 -0.4430 3.5410 -8.5672 40 1 -0.4961 4.4455 -7.0348 41 1 1.1899 0.5148 -7.1423 42 1 0.5413 1.2463 -8.6300 43 1 2.0455 1.8718 -7.9133 44 1 2.5188 5.8388 -3.6914 45 1 2.1359 4.9700 -2.1858 46 1 3.6934 4.6930 -3.0016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893607553.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:04 Heat of formation + Delta-G solvation = -28.855156 kcal Electronic energy + Delta-G solvation = -22481.817160 eV Core-core repulsion = 19371.469181 eV Total energy + Delta-G solvation = -3110.347979 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.57732 -38.30459 -37.79022 -35.46161 -33.66540 -32.32319 -32.01954 -28.91952 -28.15444 -28.10300 -27.24805 -25.58364 -24.87378 -22.64042 -21.44764 -20.94504 -19.55613 -18.30929 -17.38219 -17.17489 -16.84103 -16.03802 -15.62079 -15.28180 -15.15207 -14.95458 -14.89137 -14.32237 -14.17907 -13.92239 -13.84748 -13.76106 -13.31186 -13.18295 -13.13493 -12.99213 -12.84163 -12.67836 -12.59352 -12.44452 -12.32752 -12.08937 -11.94350 -11.90650 -11.73105 -11.60158 -11.31626 -10.81461 -10.56210 -10.46802 -9.09393 -8.93506 -8.08898 -6.20854 0.82472 1.41012 1.43909 1.54389 1.67344 2.00561 2.43616 3.20161 3.55060 3.81939 3.86917 4.01281 4.07517 4.10596 4.17404 4.39721 4.55972 4.59786 4.65423 4.70125 4.74574 4.76329 4.79392 4.85303 4.86397 4.92947 4.95386 4.98851 4.99416 5.10842 5.17732 5.19913 5.30147 5.38788 5.39566 5.43313 5.46674 5.56262 5.67459 5.72499 5.80967 5.89397 6.27376 6.30552 6.51336 6.80236 7.03985 7.47900 8.96590 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026080 B = 0.003869 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.360953 B = 7235.688234 C = 7646.263334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.097 4.097 3 C 0.221 3.779 4 H -0.034 1.034 5 C -0.521 4.521 6 H 0.057 0.943 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 0.954 3.046 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.673 5.673 14 C 0.137 3.863 15 C -0.175 4.175 16 C -0.204 4.204 17 C -0.009 4.009 18 C 0.014 3.986 19 C -0.137 4.137 20 C -0.139 4.139 21 C -0.136 4.136 22 O -0.179 6.179 23 C -0.026 4.026 24 C -0.070 4.070 25 H 0.031 0.969 26 H 0.050 0.950 27 H 0.033 0.967 28 H 0.018 0.982 29 H 0.058 0.942 30 H 0.260 0.740 31 H 0.330 0.670 32 H 0.060 0.940 33 H 0.024 0.976 34 H 0.144 0.856 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.086 0.914 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.089 0.911 43 H 0.053 0.947 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.437 4.751 -19.768 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.136 4.136 3 C 0.113 3.887 4 H -0.016 1.016 5 C -0.560 4.560 6 H 0.075 0.925 7 C -0.181 4.181 8 N -0.556 5.556 9 Si 0.780 3.220 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.304 5.304 14 C 0.007 3.993 15 C -0.176 4.176 16 C -0.223 4.223 17 C -0.059 4.059 18 C 0.014 3.986 19 C -0.195 4.195 20 C -0.196 4.196 21 C -0.193 4.193 22 O -0.076 6.076 23 C -0.076 4.076 24 C -0.126 4.126 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.147 0.853 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.162 0.838 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.108 0.892 43 H 0.073 0.927 44 H 0.110 0.890 45 H 0.100 0.900 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.811 4.392 -19.962 20.792 hybrid contribution 0.787 0.467 1.705 1.935 sum -3.024 4.859 -18.257 19.133 Atomic orbital electron populations 1.21284 0.96132 0.98345 1.00526 1.21299 0.96214 0.97768 0.98275 1.18938 0.91143 0.92277 0.86336 1.01598 1.21446 1.31358 1.11942 0.91240 0.92530 1.25607 0.95337 0.95692 1.01468 1.70031 1.38464 1.24318 1.22788 0.85569 0.78124 0.78772 0.79552 1.19098 1.20873 1.20782 1.60607 1.47829 1.15904 1.06070 1.20060 0.92453 0.98990 0.87764 1.20183 1.05745 0.93639 0.98080 1.21427 1.05252 1.00750 0.94887 1.22756 1.02527 0.81734 0.98866 1.19285 0.94476 0.97692 0.87138 1.21918 0.94042 1.00544 1.02948 1.21826 1.02237 0.95103 1.00449 1.21906 0.99682 0.97798 0.99886 1.83914 1.58716 1.33125 1.31862 1.22551 1.01871 0.96853 0.86328 1.20346 1.00381 0.94216 0.97652 0.94934 0.93107 0.94746 0.96346 0.92355 0.93030 0.85251 0.92151 0.95797 0.83795 0.93256 0.89132 0.92587 0.92715 0.89560 0.93101 0.92442 0.89217 0.92750 0.89022 0.90017 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.83 9.46 71.98 0.68 -4.15 16 2 C -0.10 -4.83 5.58 30.60 0.17 -4.66 16 3 C 0.22 11.27 2.30 44.17 0.10 11.37 16 4 H -0.03 -1.90 7.84 -2.39 -0.02 -1.92 16 5 C -0.52 -28.20 7.34 25.60 0.19 -28.01 16 6 H 0.06 3.03 7.60 -2.91 -0.02 3.01 16 7 C 0.02 0.99 5.30 84.66 0.45 1.44 16 8 N -0.92 -52.58 11.34 21.45 0.24 -52.34 16 9 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 13 N -0.67 -29.20 5.50 -499.45 -2.74 -31.94 16 14 C 0.14 5.25 5.67 85.56 0.48 5.74 16 15 C -0.17 -5.99 5.72 -19.94 -0.11 -6.11 16 16 C -0.20 -6.38 10.12 22.19 0.22 -6.16 16 17 C -0.01 -0.25 5.68 24.83 0.14 -0.11 16 18 C 0.01 0.28 0.92 -52.93 -0.05 0.23 16 19 C -0.14 -2.45 8.35 71.98 0.60 -1.85 16 20 C -0.14 -2.34 8.03 71.98 0.58 -1.76 16 21 C -0.14 -2.18 8.34 71.98 0.60 -1.58 16 22 O -0.18 -5.38 10.06 -2.41 -0.02 -5.40 16 23 C -0.03 -0.79 7.32 24.83 0.18 -0.61 16 24 C -0.07 -1.73 10.12 71.24 0.72 -1.01 16 25 H 0.03 1.58 7.37 -2.39 -0.02 1.56 16 26 H 0.05 2.26 7.50 -2.38 -0.02 2.25 16 27 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.02 0.85 7.43 -2.39 -0.02 0.83 16 29 H 0.06 3.23 6.12 -2.39 -0.01 3.22 16 30 H 0.26 14.23 8.31 -92.70 -0.77 13.46 16 31 H 0.33 14.05 7.78 -89.69 -0.70 13.35 16 32 H 0.06 2.41 7.39 -2.39 -0.02 2.39 16 33 H 0.02 0.92 8.13 -2.39 -0.02 0.90 16 34 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 35 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 36 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.08 7.99 -2.38 -0.02 1.06 16 38 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 0.98 7.99 -2.39 -0.02 0.96 16 42 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.09 1.84 8.14 -2.38 -0.02 1.83 16 45 H 0.08 2.11 7.68 -2.39 -0.02 2.10 16 46 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -61.71 366.61 4.69 -57.02 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.23 Total: 24.48 kcal Atomic # 6 Polarization: -42.18 SS G_CDS: 4.96 Total: -37.22 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -2.50 Total: -84.28 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.02 Total: -5.40 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -61.71 4.69 -57.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893607553.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.165 kcal (2) G-P(sol) polarization free energy of solvation -61.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds