Wall clock time and date at job start Tue Mar 31 2020 02:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47368 * 2 1 4 4 H 1.09001 * 109.47230 * 185.17595 * 3 2 1 5 5 C 1.50701 * 109.47088 * 305.17832 * 3 2 1 6 6 H 1.07997 * 119.99727 * 119.99537 * 5 3 2 7 7 C 1.37870 * 119.99983 * 299.99571 * 5 3 2 8 8 N 1.31516 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99934 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47183 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47398 * 120.00106 * 9 7 5 12 12 H 1.48501 * 109.47055 * 240.00131 * 9 7 5 13 13 N 1.46906 * 109.46566 * 65.17705 * 3 2 1 14 14 C 1.46903 * 110.99588 * 85.99562 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.71948 * 14 13 3 16 16 C 1.41388 * 126.57726 * 260.02286 * 15 14 13 17 17 C 1.34510 * 106.84269 * 179.97438 * 16 15 14 18 18 C 1.50700 * 125.79172 * 179.97438 * 17 16 15 19 19 C 1.53005 * 109.46953 * 59.99970 * 18 17 16 20 20 C 1.52996 * 109.47148 * 179.97438 * 18 17 16 21 21 C 1.52995 * 109.47001 * 299.99701 * 18 17 16 22 22 O 1.34302 * 108.42016 * 359.97438 * 17 16 15 23 23 C 1.34304 * 109.47566 * 359.77462 * 22 17 16 24 24 C 1.50704 * 125.78981 * 180.23602 * 23 22 17 25 25 H 1.09004 * 109.46732 * 54.86082 * 1 2 3 26 26 H 1.08991 * 109.46786 * 294.86343 * 1 2 3 27 27 H 1.08995 * 109.47132 * 174.85767 * 1 2 3 28 28 H 1.08998 * 109.46992 * 120.00205 * 2 1 3 29 29 H 1.09007 * 109.47264 * 239.99975 * 2 1 3 30 30 H 0.97000 * 119.99793 * 179.97438 * 8 7 5 31 31 H 1.00892 * 111.00186 * 322.03813 * 13 3 2 32 32 H 1.08994 * 109.46864 * 294.71113 * 14 13 3 33 33 H 1.08994 * 109.47486 * 54.71800 * 14 13 3 34 34 H 1.08003 * 126.57761 * 359.92956 * 16 15 14 35 35 H 1.08996 * 109.47287 * 59.99885 * 19 18 17 36 36 H 1.08995 * 109.46854 * 180.02562 * 19 18 17 37 37 H 1.09007 * 109.46608 * 299.99965 * 19 18 17 38 38 H 1.09011 * 109.46887 * 60.00593 * 20 18 17 39 39 H 1.09002 * 109.47270 * 179.97438 * 20 18 17 40 40 H 1.08996 * 109.47390 * 300.00298 * 20 18 17 41 41 H 1.09010 * 109.47134 * 60.00131 * 21 18 17 42 42 H 1.09000 * 109.47174 * 179.97438 * 21 18 17 43 43 H 1.09000 * 109.47699 * 300.00185 * 21 18 17 44 44 H 1.08995 * 109.47264 * 270.15795 * 24 23 22 45 45 H 1.08999 * 109.47138 * 30.16789 * 24 23 22 46 46 H 1.09006 * 109.46952 * 150.15879 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1261 1.4439 -0.0927 5 6 1.4358 2.1890 -1.1613 6 1 0.8267 3.0629 -0.9833 7 6 1.6606 1.7563 -2.4509 8 7 2.4019 0.6918 -2.6676 9 14 0.9121 2.6820 -3.8905 10 1 0.1259 3.8349 -3.3827 11 1 1.9950 3.1739 -4.7795 12 1 0.0199 1.7727 -4.6536 13 7 1.6551 2.0979 1.2571 14 6 2.6451 1.8381 2.3109 15 6 2.2865 2.6285 3.5429 16 6 2.8608 3.8529 3.9551 17 6 2.2492 4.2043 5.1004 18 6 2.5359 5.4436 5.9085 19 6 2.2734 6.6834 5.0512 20 6 1.6259 5.4725 7.1381 21 6 3.9988 5.4333 6.3562 22 8 1.3396 3.2632 5.4017 23 6 1.3541 2.3079 4.4579 24 6 0.4773 1.0825 4.4306 25 1 -0.3633 0.5915 -0.8404 26 1 -0.3632 0.4321 0.9324 27 1 -0.3633 -1.0235 -0.0921 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 2.5597 0.3872 -3.5749 31 1 0.7332 1.8090 1.5479 32 1 2.6503 0.7748 2.5503 33 1 3.6336 2.1370 1.9624 34 1 3.6415 4.4007 3.4481 35 1 1.2312 6.6906 4.7322 36 1 2.4812 7.5797 5.6355 37 1 2.9214 6.6629 4.1749 38 1 1.8126 4.5892 7.7491 39 1 1.8336 6.3687 7.7228 40 1 0.5838 5.4799 6.8189 41 1 4.6468 5.4130 5.4798 42 1 4.2063 6.3299 6.9402 43 1 4.1858 4.5501 6.9669 44 1 0.9723 0.2696 4.9618 45 1 -0.4742 1.3057 4.9131 46 1 0.2996 0.7858 3.3968 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893607554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:07 Heat of formation + Delta-G solvation = -27.941634 kcal Electronic energy + Delta-G solvation = -22482.827723 eV Core-core repulsion = 19372.519357 eV Total energy + Delta-G solvation = -3110.308366 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.58578 -38.50972 -37.81133 -35.45192 -33.71869 -32.27212 -31.91377 -28.81612 -28.16528 -28.11447 -27.33619 -25.64615 -24.88693 -22.65316 -21.44037 -21.20733 -19.55572 -18.12387 -17.39818 -17.21116 -16.71056 -16.33711 -15.68690 -15.37398 -15.01202 -14.93292 -14.75457 -14.34041 -14.19649 -14.00795 -13.76105 -13.68965 -13.50253 -13.31332 -13.14326 -13.02937 -12.82712 -12.61956 -12.60099 -12.44245 -12.38453 -12.08542 -11.95015 -11.87574 -11.72050 -11.66312 -11.42266 -10.98356 -10.51405 -10.43062 -9.09342 -8.87762 -8.04977 -6.13298 0.81576 1.41186 1.43989 1.55203 1.66204 1.99387 2.46399 3.23470 3.54175 3.82215 3.86074 4.00565 4.04859 4.11720 4.15884 4.36257 4.53889 4.56820 4.60859 4.64951 4.67461 4.71685 4.75407 4.78511 4.84032 4.85646 4.94448 4.98035 4.98653 5.10238 5.10489 5.16932 5.19528 5.35858 5.38568 5.42904 5.43582 5.46498 5.65932 5.71959 5.75604 5.85221 6.29224 6.32917 6.69475 6.85306 6.99532 7.54449 9.00364 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022280 B = 0.004006 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.430934 B = 6987.403094 C = 7647.853322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.138 4.138 3 C 0.220 3.780 4 H -0.004 1.004 5 C -0.498 4.498 6 H 0.049 0.951 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.280 1.280 13 N -0.681 5.681 14 C 0.136 3.864 15 C -0.177 4.177 16 C -0.207 4.207 17 C -0.008 4.008 18 C 0.014 3.986 19 C -0.138 4.138 20 C -0.139 4.139 21 C -0.136 4.136 22 O -0.178 6.178 23 C -0.025 4.025 24 C -0.070 4.070 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.027 0.973 29 H 0.062 0.938 30 H 0.259 0.741 31 H 0.332 0.668 32 H 0.031 0.969 33 H 0.055 0.945 34 H 0.142 0.858 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.086 0.914 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.055 0.945 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.164 6.241 19.482 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.177 4.177 3 C 0.112 3.888 4 H 0.014 0.986 5 C -0.537 4.537 6 H 0.067 0.933 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.206 1.206 13 N -0.313 5.313 14 C 0.006 3.994 15 C -0.179 4.179 16 C -0.227 4.227 17 C -0.058 4.058 18 C 0.014 3.986 19 C -0.195 4.195 20 C -0.196 4.196 21 C -0.193 4.193 22 O -0.075 6.075 23 C -0.075 4.075 24 C -0.126 4.126 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.151 0.849 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.159 0.841 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.006 6.752 19.404 20.569 hybrid contribution -0.068 -0.777 -1.346 1.556 sum -1.073 5.975 18.058 19.051 Atomic orbital electron populations 1.21485 0.95829 0.99712 1.00823 1.21943 0.96589 0.99700 0.99506 1.19006 0.93602 0.89680 0.86556 0.98593 1.21281 1.30258 1.11229 0.90895 0.93308 1.25570 0.95956 0.95909 1.00932 1.70016 1.40007 1.25070 1.20971 0.85614 0.78220 0.78817 0.79629 1.19586 1.21020 1.20565 1.60694 1.04450 1.63128 1.03040 1.20063 0.95938 0.95198 0.88163 1.20229 1.00870 0.98449 0.98329 1.21446 1.05111 0.97960 0.98144 1.22740 0.92445 0.92992 0.97584 1.19283 0.97762 0.87319 0.94206 1.21924 1.01697 0.96239 0.99663 1.21824 0.98605 1.03111 0.96035 1.21907 0.92448 1.03234 1.01703 1.83907 1.50297 1.28585 1.44726 1.22575 1.01428 0.93760 0.89740 1.20371 0.98025 0.90213 1.03975 0.93721 0.93257 0.93668 0.95425 0.91933 0.93192 0.84933 0.95079 0.92631 0.84056 0.93243 0.89070 0.92772 0.92610 0.89551 0.93049 0.92579 0.89188 0.92632 0.88798 0.89016 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.00 9.40 71.98 0.68 -4.32 16 2 C -0.14 -6.43 5.51 30.60 0.17 -6.26 16 3 C 0.22 11.18 2.33 44.17 0.10 11.28 16 4 H 0.00 -0.22 7.70 -2.39 -0.02 -0.24 16 5 C -0.50 -27.63 7.25 25.60 0.19 -27.44 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 7 C 0.01 0.80 5.28 84.65 0.45 1.25 16 8 N -0.92 -52.89 11.38 21.44 0.24 -52.64 16 9 Si 0.95 44.35 29.54 68.60 2.03 46.38 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 N -0.68 -29.88 6.19 -499.44 -3.09 -32.97 16 14 C 0.14 5.24 5.52 85.56 0.47 5.71 16 15 C -0.18 -6.15 5.72 -19.94 -0.11 -6.26 16 16 C -0.21 -6.70 10.12 22.19 0.22 -6.48 16 17 C -0.01 -0.22 5.68 24.83 0.14 -0.08 16 18 C 0.01 0.29 0.92 -52.93 -0.05 0.24 16 19 C -0.14 -2.58 8.34 71.98 0.60 -1.98 16 20 C -0.14 -2.35 8.03 71.98 0.58 -1.77 16 21 C -0.14 -2.26 8.35 71.98 0.60 -1.66 16 22 O -0.18 -5.34 10.06 -2.48 -0.03 -5.36 16 23 C -0.02 -0.75 7.32 24.83 0.18 -0.57 16 24 C -0.07 -1.64 10.21 71.24 0.73 -0.91 16 25 H 0.04 2.06 6.85 -2.38 -0.02 2.04 16 26 H 0.05 1.78 6.63 -2.39 -0.02 1.76 16 27 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.03 1.16 7.51 -2.39 -0.02 1.14 16 29 H 0.06 3.33 6.23 -2.38 -0.01 3.31 16 30 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 31 H 0.33 13.60 5.77 -89.70 -0.52 13.08 16 32 H 0.03 1.15 7.54 -2.39 -0.02 1.13 16 33 H 0.06 2.28 7.92 -2.39 -0.02 2.27 16 34 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 1.11 7.99 -2.38 -0.02 1.09 16 38 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 1.00 7.99 -2.38 -0.02 0.99 16 42 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.08 2.02 6.96 -2.38 -0.02 2.00 16 Total: -1.00 -63.07 363.18 4.51 -58.56 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.42 Total: 25.29 kcal Atomic # 6 Polarization: -44.20 SS G_CDS: 4.94 Total: -39.26 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -2.85 Total: -85.62 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.03 Total: -5.36 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -63.07 4.51 -58.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893607554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.617 kcal (2) G-P(sol) polarization free energy of solvation -63.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds