Wall clock time and date at job start Tue Mar 31 2020 01:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47190 * 332.07840 * 3 2 1 5 5 O 1.42897 * 109.57415 * 300.15631 * 4 3 2 6 6 C 1.53122 * 109.52029 * 180.02562 * 4 3 2 7 7 C 1.53042 * 109.27501 * 182.44077 * 6 4 3 8 8 N 1.46845 * 109.52437 * 59.17759 * 7 6 4 9 9 C 1.46901 * 111.00224 * 174.16124 * 8 7 6 10 10 C 1.53000 * 109.47337 * 210.93964 * 9 8 7 11 11 C 1.52999 * 109.47170 * 295.35956 * 10 9 8 12 12 C 1.53002 * 109.47062 * 55.35910 * 10 9 8 13 13 C 1.53000 * 109.47065 * 175.35660 * 10 9 8 14 14 C 1.50697 * 109.47041 * 179.97438 * 13 10 9 15 15 H 1.08007 * 120.00123 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00311 * 180.02562 * 14 13 10 17 17 N 1.31514 * 119.99526 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00288 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47183 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47364 * 120.00122 * 18 16 14 21 21 H 1.48502 * 109.46956 * 239.99829 * 18 16 14 22 22 C 1.46842 * 111.19985 * 298.25704 * 8 7 6 23 23 C 1.53045 * 109.52460 * 61.74192 * 22 8 7 24 24 H 4.44650 * 5.63316 * 179.97438 * 4 1 2 25 25 H 1.08993 * 109.47055 * 212.07607 * 3 2 1 26 26 H 1.09005 * 109.47014 * 92.08036 * 3 2 1 27 27 H 0.96703 * 113.99916 * 59.84085 * 5 4 3 28 28 H 1.09000 * 109.50450 * 302.37497 * 6 4 3 29 29 H 1.08994 * 109.50686 * 62.49870 * 6 4 3 30 30 H 1.08993 * 109.46027 * 179.19374 * 7 6 4 31 31 H 1.09000 * 109.46020 * 299.16315 * 7 6 4 32 32 H 1.09004 * 109.47097 * 330.93727 * 9 8 7 33 33 H 1.08996 * 109.47036 * 90.93639 * 9 8 7 34 34 H 1.09002 * 109.47058 * 71.62496 * 11 10 9 35 35 H 1.08995 * 109.47361 * 191.62799 * 11 10 9 36 36 H 1.09003 * 109.46799 * 311.63378 * 11 10 9 37 37 H 1.08996 * 109.47292 * 55.68421 * 12 10 9 38 38 H 1.09004 * 109.46988 * 175.68717 * 12 10 9 39 39 H 1.09002 * 109.47247 * 295.68194 * 12 10 9 40 40 H 1.08994 * 109.47253 * 299.99911 * 13 10 9 41 41 H 1.09003 * 109.47110 * 60.00289 * 13 10 9 42 42 H 0.97008 * 120.00027 * 180.02562 * 17 16 14 43 43 H 1.09000 * 109.46447 * 301.72702 * 22 8 7 44 44 H 1.09004 * 109.46708 * 181.75794 * 22 8 7 45 45 H 1.08997 * 109.50463 * 180.87724 * 23 22 8 46 46 H 1.09002 * 109.50256 * 60.76051 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.2737 0.6755 5 8 2.6785 -1.3268 2.0210 6 6 4.6878 -1.2738 0.6766 7 6 5.1924 -2.5781 1.2983 8 7 4.6855 -3.7188 0.5248 9 6 5.2612 -4.9806 1.0089 10 6 5.3802 -5.9666 -0.1550 11 6 3.9831 -6.3207 -0.6683 12 6 6.1915 -5.3275 -1.2838 13 6 6.0852 -7.2375 0.3233 14 6 6.2019 -8.2088 -0.8229 15 1 5.8125 -7.9459 -1.7954 16 6 6.8056 -9.4333 -0.6302 17 7 7.2792 -9.7537 0.5541 18 14 6.9509 -10.6370 -2.0511 19 1 6.3437 -10.0415 -3.2685 20 1 8.3839 -10.9319 -2.3056 21 1 6.2399 -11.8951 -1.7087 22 6 3.2181 -3.7665 0.5488 23 6 2.6544 -2.4977 -0.0953 24 1 -1.0498 -0.0002 0.0003 25 1 3.0089 0.8715 0.5457 26 1 3.0093 0.0381 -1.0270 27 1 1.7144 -1.3294 2.0961 28 1 5.0526 -1.1939 -0.3474 29 1 5.0514 -0.4281 1.2601 30 1 6.2823 -2.5876 1.2876 31 1 4.8388 -2.6508 2.3268 32 1 6.2497 -4.7920 1.4278 33 1 4.6151 -5.4031 1.7784 34 1 3.5615 -5.4643 -1.1946 35 1 4.0505 -7.1687 -1.3497 36 1 3.3419 -6.5812 0.1738 37 1 7.1590 -5.0056 -0.8988 38 1 6.3416 -6.0558 -2.0808 39 1 5.6517 -4.4657 -1.6763 40 1 7.0805 -6.9852 0.6890 41 1 5.5072 -7.6928 1.1275 42 1 7.7044 -10.6151 0.6897 43 1 2.8737 -3.8336 1.5808 44 1 2.8739 -4.6392 -0.0062 45 1 1.5653 -2.5263 -0.0633 46 1 2.9872 -2.4370 -1.1315 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895674833.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:20 Heat of formation + Delta-G solvation = -9.496765 kcal Electronic energy + Delta-G solvation = -22864.707691 eV Core-core repulsion = 19755.199154 eV Total energy + Delta-G solvation = -3109.508536 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.96580 -37.61647 -35.15115 -33.91276 -32.46188 -31.48319 -30.89388 -28.51739 -26.88209 -26.33462 -25.22939 -23.18455 -22.80201 -21.63790 -19.77634 -18.37104 -17.80637 -16.57297 -16.17191 -15.98408 -14.99809 -14.92416 -14.59268 -14.46551 -14.29590 -13.70577 -13.44603 -13.07123 -12.91566 -12.53205 -12.34560 -12.14527 -12.00119 -11.75817 -11.46067 -11.27617 -11.14133 -10.96064 -10.79736 -10.69125 -10.67070 -10.48761 -10.36236 -10.24647 -10.13985 -10.04171 -9.65483 -9.53836 -8.89816 -8.78229 -8.28151 -7.82671 -5.92700 -3.92254 2.49417 2.56160 3.34584 3.42412 3.46023 4.01923 4.04387 4.30172 4.52781 4.63066 4.70859 4.82080 5.25112 5.30917 5.40882 5.43075 5.49060 5.55173 5.65084 5.68092 5.68909 5.83494 5.86632 5.92271 6.04753 6.08288 6.13451 6.17042 6.26091 6.38801 6.41947 6.63116 6.78479 6.87610 6.92370 7.29841 7.30865 7.31505 7.35974 7.49280 7.51798 7.57939 7.76796 7.92270 8.08461 8.53453 9.13513 9.70179 11.19057 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.036016 B = 0.003530 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.255576 B = 7930.497748 C = 8199.493063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.184 4.184 3 C -0.041 4.041 4 C 0.139 3.861 5 O -0.554 6.554 6 C -0.099 4.099 7 C 0.058 3.942 8 N -0.529 5.529 9 C 0.067 3.933 10 C -0.051 4.051 11 C -0.132 4.132 12 C -0.113 4.113 13 C 0.032 3.968 14 C -0.504 4.504 15 H 0.060 0.940 16 C 0.053 3.947 17 N -0.898 5.898 18 Si 0.886 3.114 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.286 1.286 22 C 0.044 3.956 23 C -0.138 4.138 24 H 0.217 0.783 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.371 0.629 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.042 0.958 35 H 0.064 0.936 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.053 0.947 39 H 0.043 0.957 40 H 0.014 0.986 41 H 0.012 0.988 42 H 0.258 0.742 43 H 0.031 0.969 44 H 0.095 0.905 45 H 0.064 0.936 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.387 19.453 -0.142 22.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.184 4.184 3 C -0.078 4.078 4 C 0.098 3.902 5 O -0.359 6.359 6 C -0.137 4.137 7 C -0.070 4.070 8 N -0.254 5.254 9 C -0.060 4.060 10 C -0.052 4.052 11 C -0.188 4.188 12 C -0.170 4.170 13 C -0.005 4.005 14 C -0.542 4.542 15 H 0.078 0.922 16 C -0.147 4.147 17 N -0.538 5.538 18 Si 0.715 3.285 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.084 4.084 23 C -0.176 4.176 24 H 0.233 0.767 25 H 0.111 0.889 26 H 0.115 0.885 27 H 0.219 0.781 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.032 0.968 41 H 0.030 0.970 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.113 0.887 45 H 0.083 0.917 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.495 19.374 -0.403 21.580 hybrid contribution -0.966 -0.838 0.054 1.280 sum -10.461 18.536 -0.349 21.287 Atomic orbital electron populations 1.24918 0.95942 1.00825 1.01054 1.23027 0.94431 1.00475 1.00462 1.19561 0.85200 1.00057 1.02988 1.21238 0.94902 0.92031 0.82030 1.86543 1.26305 1.96860 1.26228 1.21578 0.91438 0.98186 1.02453 1.22009 0.99468 0.90181 0.95373 1.61956 1.06099 1.03089 1.54221 1.22311 0.98258 0.88685 0.96790 1.20558 0.95540 0.95209 0.93903 1.21976 0.96218 1.00397 1.00258 1.21566 0.98164 0.98961 0.98310 1.19128 0.94895 0.90180 0.96301 1.21287 1.36657 0.99803 0.96472 0.92191 1.25019 0.95961 0.98299 0.95396 1.69983 1.39997 1.22109 1.21723 0.86621 0.77622 0.81331 0.82938 1.19769 1.21196 1.21239 1.22427 0.88345 0.98256 0.99371 1.22258 0.99841 0.94795 1.00735 0.76655 0.88946 0.88521 0.78138 0.89679 0.91099 0.90893 0.94516 0.91861 0.94989 0.93883 0.91712 0.94616 0.94616 0.92767 0.93835 0.96800 0.97014 0.93277 0.95093 0.88721 0.91741 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.71 19.25 29.55 0.57 -1.14 16 2 C -0.18 -1.69 11.13 -37.12 -0.41 -2.11 16 3 C -0.04 -0.35 5.00 -29.52 -0.15 -0.50 16 4 C 0.14 1.42 0.73 -90.50 -0.07 1.35 16 5 O -0.55 -6.26 11.81 -35.23 -0.42 -6.67 16 6 C -0.10 -1.05 5.11 -26.65 -0.14 -1.19 16 7 C 0.06 0.77 5.22 -3.83 -0.02 0.75 16 8 N -0.53 -7.88 3.60 -234.67 -0.85 -8.73 16 9 C 0.07 1.19 4.24 -3.82 -0.02 1.17 16 10 C -0.05 -1.04 0.60 -154.51 -0.09 -1.13 16 11 C -0.13 -2.50 6.83 37.16 0.25 -2.25 16 12 C -0.11 -2.20 7.99 37.16 0.30 -1.90 16 13 C 0.03 0.83 4.04 -27.88 -0.11 0.71 16 14 C -0.50 -13.86 7.43 -34.44 -0.26 -14.12 16 15 H 0.06 1.61 5.76 -52.48 -0.30 1.31 16 16 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 17 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 18 Si 0.89 21.72 29.54 -169.99 -5.02 16.69 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 C 0.04 0.60 4.76 -3.83 -0.02 0.59 16 23 C -0.14 -1.55 4.78 -26.65 -0.13 -1.68 16 24 H 0.22 1.08 7.80 -54.10 -0.42 0.66 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.37 3.40 8.10 45.56 0.37 3.77 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.95 7.90 -51.93 -0.41 0.54 16 31 H 0.04 0.53 7.76 -51.93 -0.40 0.13 16 32 H 0.06 1.14 7.62 -51.93 -0.40 0.75 16 33 H 0.03 0.59 7.79 -51.93 -0.40 0.18 16 34 H 0.04 0.72 6.18 -51.93 -0.32 0.40 16 35 H 0.06 1.36 6.32 -51.93 -0.33 1.03 16 36 H 0.03 0.66 7.74 -51.93 -0.40 0.25 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 1.14 6.49 -51.93 -0.34 0.80 16 39 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.03 0.45 7.76 -51.93 -0.40 0.05 16 44 H 0.09 1.39 4.14 -51.93 -0.22 1.17 16 45 H 0.06 0.68 7.33 -51.93 -0.38 0.30 16 46 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 351.89 15.07 5.30 5.30 Total: -1.00 -30.49 351.89 -7.90 -38.39 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.27 Total: 1.37 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -0.38 Total: -20.03 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.11 Total: -35.05 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.42 Total: -6.67 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.49 -7.90 -38.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895674833.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.890 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds