Wall clock time and date at job start Tue Mar 31 2020 02:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.51276 * 120.84705 * 2 1 4 4 C 1.53229 * 108.53861 * 128.92549 * 3 2 1 5 5 C 1.52964 * 109.40048 * 54.62792 * 4 3 2 6 6 C 1.50703 * 109.40816 * 176.29655 * 5 4 3 7 7 O 1.21279 * 119.99724 * 88.23248 * 6 5 4 8 8 N 1.34772 * 119.99700 * 268.22404 * 6 5 4 9 9 C 1.46498 * 120.00049 * 4.05737 * 8 6 5 10 10 C 1.50696 * 109.47539 * 84.66582 * 9 8 6 11 11 H 1.08008 * 119.99939 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00661 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99643 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00489 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47255 * 59.99767 * 14 12 10 16 16 H 1.48499 * 109.47228 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46966 * 299.99554 * 14 12 10 18 18 C 1.46499 * 119.99669 * 184.05087 * 8 6 5 19 19 C 1.52997 * 109.47030 * 86.77730 * 18 8 6 20 20 C 1.52999 * 109.47216 * 64.59299 * 19 18 8 21 21 C 1.53000 * 109.47336 * 184.59183 * 19 18 8 22 22 C 1.52962 * 109.81622 * 296.40143 * 5 4 3 23 23 C 1.51262 * 120.85312 * 180.28108 * 2 1 3 24 24 H 1.08003 * 119.99958 * 179.72301 * 1 2 3 25 25 H 1.07998 * 120.00364 * 359.71811 * 1 2 3 26 26 H 1.08998 * 109.62602 * 248.64515 * 3 2 1 27 27 H 1.09000 * 109.62542 * 9.21200 * 3 2 1 28 28 H 1.08999 * 109.48226 * 294.65167 * 4 3 2 29 29 H 1.08995 * 109.48134 * 174.60491 * 4 3 2 30 30 H 1.08993 * 109.41061 * 56.50921 * 5 4 3 31 31 H 1.09007 * 109.46830 * 204.66368 * 9 8 6 32 32 H 1.08998 * 109.47326 * 324.65888 * 9 8 6 33 33 H 0.97006 * 120.00404 * 180.02562 * 13 12 10 34 34 H 1.09003 * 109.47301 * 206.77305 * 18 8 6 35 35 H 1.08995 * 109.47331 * 326.77683 * 18 8 6 36 36 H 1.08999 * 109.47076 * 304.59486 * 19 18 8 37 37 H 1.09009 * 109.47125 * 60.00068 * 20 19 18 38 38 H 1.09000 * 109.47096 * 179.97438 * 20 19 18 39 39 H 1.09003 * 109.47316 * 299.99975 * 20 19 18 40 40 H 1.09007 * 109.46622 * 60.00225 * 21 19 18 41 41 H 1.09000 * 109.47423 * 179.97438 * 21 19 18 42 42 H 1.08999 * 109.47286 * 300.00175 * 21 19 18 43 43 H 1.08998 * 109.48205 * 303.62054 * 22 5 4 44 44 H 1.09000 * 109.49015 * 183.58999 * 22 5 4 45 45 H 1.09003 * 109.62423 * 350.78971 * 23 2 1 46 46 H 1.09005 * 109.62855 * 111.16684 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2988 0.0000 4 6 3.1191 1.2490 1.1302 5 6 3.9848 -0.0022 0.9724 6 6 5.0588 -0.0047 2.0296 7 8 4.8408 -0.5013 3.1143 8 7 6.2616 0.5449 1.7694 9 6 6.4963 1.2230 0.4922 10 6 6.0182 2.6491 0.5852 11 1 5.5826 3.0138 1.5038 12 6 6.1357 3.4881 -0.5025 13 7 6.6657 3.0439 -1.6212 14 14 5.5424 5.2556 -0.3873 15 1 6.2855 5.9580 0.6895 16 1 5.7804 5.9430 -1.6820 17 1 4.0900 5.2710 -0.0779 18 6 7.3343 0.4642 2.7639 19 6 8.1011 -0.8472 2.5818 20 6 8.7989 -0.8450 1.2202 21 6 9.1465 -0.9850 3.6904 22 6 3.1192 -1.2542 1.1240 23 6 2.0857 -1.2985 -0.0064 24 1 -0.5400 -0.9353 -0.0045 25 1 -0.5401 0.9352 0.0046 26 1 2.5943 1.4214 -0.9562 27 1 1.4033 2.1327 0.1644 28 1 2.6057 1.2170 2.0912 29 1 3.7507 2.1361 1.0846 30 1 4.4487 0.0003 -0.0139 31 1 7.5624 1.2114 0.2652 32 1 5.9509 0.7077 -0.2984 33 1 6.7488 3.6342 -2.3864 34 1 8.0157 1.3048 2.6324 35 1 6.9048 0.4979 3.7651 36 1 7.4054 -1.6848 2.6322 37 1 9.4946 -0.0073 1.1697 38 1 9.3455 -1.7791 1.0906 39 1 8.0541 -0.7469 0.4303 40 1 8.6493 -0.9865 4.6604 41 1 9.6925 -1.9194 3.5608 42 1 9.8421 -0.1473 3.6400 43 1 2.6058 -1.2269 2.0851 44 1 3.7508 -2.1412 1.0743 45 1 1.4034 -2.1334 0.1539 46 1 2.5918 -1.4181 -0.9644 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900401781.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:50 Heat of formation + Delta-G solvation = -66.303923 kcal Electronic energy + Delta-G solvation = -23418.509997 eV Core-core repulsion = 20306.538117 eV Total energy + Delta-G solvation = -3111.971879 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.29063 -38.92384 -37.48329 -35.71316 -34.15871 -33.51529 -31.95381 -29.47241 -28.25074 -28.00481 -26.39422 -24.81479 -23.84737 -22.60785 -21.18224 -19.79510 -19.23580 -18.51375 -17.83696 -17.20711 -16.37384 -16.13364 -15.90313 -15.68388 -15.28598 -14.86151 -14.68591 -14.39349 -14.16571 -14.07032 -13.81700 -13.53608 -13.36329 -13.18536 -13.03822 -12.96225 -12.69672 -12.60108 -12.44916 -12.37768 -12.06934 -12.02441 -11.92959 -11.81409 -11.58307 -11.54132 -11.41522 -11.00196 -10.61652 -10.39769 -9.84437 -9.38436 -8.16587 -6.28253 1.41774 1.42116 1.43735 1.49835 1.79828 2.33232 2.48103 3.13629 3.69927 3.77262 3.84352 3.98852 4.03638 4.15058 4.19227 4.30418 4.37673 4.44345 4.53515 4.61066 4.68127 4.72041 4.79691 4.84625 4.88945 4.90397 4.98100 5.01438 5.02139 5.06491 5.07128 5.19023 5.20198 5.23913 5.28543 5.37559 5.41447 5.42214 5.45258 5.69588 5.81464 5.92438 6.05733 6.12099 6.60066 6.86013 7.34832 7.46305 8.88439 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.010481 B = 0.008392 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.793281 B = 3335.846107 C = 5364.400763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 C -0.079 4.079 4 C -0.102 4.102 5 C -0.094 4.094 6 C 0.516 3.484 7 O -0.598 6.598 8 N -0.596 5.596 9 C 0.254 3.746 10 C -0.535 4.535 11 H 0.050 0.950 12 C 0.030 3.970 13 N -0.916 5.916 14 Si 0.942 3.058 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.269 1.269 18 C 0.120 3.880 19 C -0.103 4.103 20 C -0.139 4.139 21 C -0.135 4.135 22 C -0.090 4.090 23 C -0.078 4.078 24 H 0.113 0.887 25 H 0.102 0.898 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.030 0.970 32 H 0.025 0.975 33 H 0.266 0.734 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.038 0.962 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.090 0.910 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.911 -6.915 2.499 8.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.130 4.130 3 C -0.116 4.116 4 C -0.139 4.139 5 C -0.115 4.115 6 C 0.305 3.695 7 O -0.482 6.482 8 N -0.325 5.325 9 C 0.133 3.867 10 C -0.574 4.574 11 H 0.068 0.932 12 C -0.171 4.171 13 N -0.555 5.555 14 Si 0.768 3.232 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.194 1.194 18 C -0.003 4.003 19 C -0.123 4.123 20 C -0.197 4.197 21 C -0.193 4.193 22 C -0.128 4.128 23 C -0.115 4.115 24 H 0.132 0.868 25 H 0.120 0.880 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.048 0.952 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.109 0.891 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.930 -7.093 2.855 8.597 hybrid contribution 0.014 1.294 -0.160 1.304 sum -3.916 -5.800 2.695 7.499 Atomic orbital electron populations 1.23755 0.94321 1.02720 1.02134 1.22036 0.95616 0.95494 0.99866 1.20723 0.96910 0.95634 0.98309 1.21449 0.96847 0.97233 0.98414 1.21184 0.94456 0.97923 0.97936 1.20938 0.83483 0.76573 0.88461 1.90537 1.81656 1.49534 1.26429 1.48252 1.11330 1.53753 1.19120 1.19167 0.96900 0.90823 0.79781 1.21544 1.40849 0.96767 0.98242 0.93175 1.25474 0.95104 1.01652 0.94851 1.69986 1.44833 1.37488 1.03169 0.85849 0.79310 0.80777 0.77278 1.20168 1.20811 1.19359 1.21493 0.88966 0.98069 0.91816 1.21405 0.97352 0.96679 0.96865 1.21817 0.99888 1.01940 0.96007 1.21704 0.97868 1.02666 0.97013 1.21331 0.96757 0.95394 0.99306 1.20801 0.97154 0.95255 0.98339 0.86849 0.87959 0.91604 0.90636 0.92992 0.91036 0.89685 0.95224 0.95671 0.92440 0.90805 0.92093 0.92947 0.92706 0.91375 0.94257 0.92665 0.91103 0.91838 0.92143 0.91945 0.89121 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.40 13.99 67.78 0.95 -3.45 16 2 C -0.13 -3.57 5.35 -16.13 -0.09 -3.65 16 3 C -0.08 -2.52 6.03 30.11 0.18 -2.33 16 4 C -0.10 -3.81 5.19 30.66 0.16 -3.66 16 5 C -0.09 -3.57 1.84 -11.56 -0.02 -3.59 16 6 C 0.52 22.12 6.64 87.66 0.58 22.70 16 7 O -0.60 -27.78 15.89 -3.03 -0.05 -27.83 16 8 N -0.60 -25.36 2.23 -826.17 -1.84 -27.20 16 9 C 0.25 11.89 3.86 85.63 0.33 12.22 16 10 C -0.54 -27.10 7.43 25.60 0.19 -26.91 16 11 H 0.05 2.61 7.31 -2.91 -0.02 2.59 16 12 C 0.03 1.53 5.46 84.65 0.46 1.99 16 13 N -0.92 -49.14 13.29 21.44 0.28 -48.85 16 14 Si 0.94 41.12 29.54 68.60 2.03 43.15 16 15 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 16 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 18 C 0.12 4.50 4.84 86.38 0.42 4.92 16 19 C -0.10 -3.27 3.11 -10.79 -0.03 -3.31 16 20 C -0.14 -4.30 8.25 71.98 0.59 -3.71 16 21 C -0.13 -3.32 9.19 71.98 0.66 -2.66 16 22 C -0.09 -2.88 4.77 30.66 0.15 -2.73 16 23 C -0.08 -2.06 6.03 30.10 0.18 -1.87 16 24 H 0.11 2.14 7.92 -2.91 -0.02 2.11 16 25 H 0.10 2.16 7.92 -2.91 -0.02 2.14 16 26 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.08 2.22 7.89 -2.39 -0.02 2.20 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.07 3.09 5.46 -2.39 -0.01 3.07 16 30 H 0.09 3.42 5.90 -2.39 -0.01 3.41 16 31 H 0.03 1.46 6.60 -2.38 -0.02 1.44 16 32 H 0.03 1.25 5.92 -2.39 -0.01 1.23 16 33 H 0.27 13.70 8.31 -92.70 -0.77 12.93 16 34 H 0.07 2.76 8.05 -2.39 -0.02 2.74 16 35 H 0.06 2.37 7.47 -2.39 -0.02 2.35 16 36 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.04 1.39 6.24 -2.39 -0.01 1.38 16 40 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.06 2.04 7.97 -2.39 -0.02 2.02 16 44 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.09 1.93 7.89 -2.39 -0.02 1.91 16 46 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -57.31 356.53 6.06 -51.25 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.92 Total: 25.52 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: 4.71 Total: -16.03 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -1.56 Total: -76.05 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.05 Total: -27.83 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -57.31 6.06 -51.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900401781.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.049 kcal (2) G-P(sol) polarization free energy of solvation -57.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds