Wall clock time and date at job start Tue Mar 31 2020 02:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47316 * 2 1 4 4 H 1.09000 * 109.47656 * 302.74902 * 3 2 1 5 5 C 1.50699 * 109.47192 * 182.74426 * 3 2 1 6 6 H 1.07998 * 120.00340 * 275.36567 * 5 3 2 7 7 C 1.37878 * 119.99655 * 95.36714 * 5 3 2 8 8 N 1.31517 * 119.99908 * 186.00053 * 7 5 3 9 9 Si 1.86803 * 120.00056 * 6.00367 * 7 5 3 10 10 H 1.48501 * 109.47080 * 85.39184 * 9 7 5 11 11 H 1.48503 * 109.46912 * 205.39263 * 9 7 5 12 12 H 1.48494 * 109.46938 * 325.38790 * 9 7 5 13 13 N 1.46504 * 109.47024 * 62.74742 * 3 2 1 14 14 C 1.34772 * 120.00256 * 275.00165 * 13 3 2 15 15 O 1.21290 * 119.99780 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00433 * 180.02562 * 14 13 3 17 17 C 1.52999 * 115.55026 * 159.95550 * 16 14 13 18 18 C 1.52999 * 109.46670 * 203.72525 * 17 16 14 19 19 C 1.53003 * 109.47145 * 179.97438 * 18 17 16 20 20 C 1.53000 * 109.47089 * 59.99675 * 19 18 17 21 21 C 1.52999 * 109.47392 * 300.00173 * 20 19 18 22 22 C 1.52993 * 109.47389 * 83.72525 * 17 16 14 23 23 C 1.53004 * 117.49147 * 305.61873 * 16 14 13 24 24 C 1.53003 * 60.02765 * 107.47812 * 23 16 14 25 25 H 1.09000 * 109.47027 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46682 * 300.00045 * 1 2 3 27 27 H 1.09002 * 109.46791 * 60.00285 * 1 2 3 28 28 H 1.09002 * 109.47467 * 239.99811 * 2 1 3 29 29 H 1.09007 * 109.46913 * 120.00180 * 2 1 3 30 30 H 0.97006 * 120.00100 * 180.02562 * 8 7 5 31 31 H 0.97001 * 119.99859 * 94.99839 * 13 3 2 32 32 H 1.08999 * 109.46812 * 323.71790 * 17 16 14 33 33 H 1.09003 * 109.47204 * 299.99601 * 18 17 16 34 34 H 1.08998 * 109.47785 * 59.99814 * 18 17 16 35 35 H 1.08995 * 109.47142 * 300.00103 * 19 18 17 36 36 H 1.09004 * 109.46992 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.47385 * 179.97438 * 20 19 18 38 38 H 1.09003 * 109.47013 * 60.00373 * 20 19 18 39 39 H 1.08999 * 109.46902 * 300.00474 * 21 20 19 40 40 H 1.08991 * 109.47536 * 179.97438 * 21 20 19 41 41 H 1.09001 * 109.47356 * 299.99520 * 22 17 16 42 42 H 1.08999 * 109.47744 * 59.99835 * 22 17 16 43 43 H 1.09002 * 117.49341 * 214.97479 * 23 16 14 44 44 H 1.08998 * 117.50148 * 359.97438 * 23 16 14 45 45 H 1.09005 * 117.49705 * 107.49992 * 24 23 16 46 46 H 1.08991 * 117.49879 * 252.51489 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6371 1.9704 -0.8643 5 6 3.5455 1.4429 -0.0680 6 1 4.1270 1.3408 0.8363 7 6 4.1805 1.5738 -1.2849 8 7 5.4883 1.4562 -1.3602 9 14 3.1834 1.9182 -2.8265 10 1 2.9606 3.3807 -2.9555 11 1 3.9231 1.4234 -4.0153 12 1 1.8738 1.2242 -2.7343 13 7 1.6065 2.1137 1.2279 14 6 0.3860 2.6817 1.2905 15 8 -0.3534 2.6376 0.3300 16 6 -0.0598 3.3727 2.5534 17 6 -1.2082 4.3702 2.3897 18 6 -1.1670 5.3873 3.5320 19 6 -2.3151 6.3853 3.3680 20 6 -3.6494 5.6372 3.3990 21 6 -3.6906 4.6202 2.2567 22 6 -2.5422 3.6218 2.4211 23 6 0.0000 2.5717 3.8556 24 6 1.0108 3.6915 3.6000 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 5.9351 1.5487 -2.2162 31 1 2.1980 2.1492 1.9960 32 1 -1.1052 4.8896 1.4370 33 1 -1.2699 4.8679 4.4848 34 1 -0.2166 5.9205 3.5097 35 1 -2.2118 6.9046 2.4153 36 1 -2.2860 7.1095 4.1821 37 1 -4.4674 6.3482 3.2826 38 1 -3.7528 5.1179 4.3518 39 1 -3.5872 5.1396 1.3040 40 1 -4.6410 4.0870 2.2790 41 1 -2.5717 2.8973 1.6073 42 1 -2.6452 3.1024 3.3738 43 1 -0.7786 2.7558 4.5959 44 1 0.3613 1.5449 3.7988 45 1 0.8971 4.6123 4.1722 46 1 2.0369 3.4015 3.3747 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907386482.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:42 Heat of formation + Delta-G solvation = -63.928584 kcal Electronic energy + Delta-G solvation = -23268.641308 eV Core-core repulsion = 20156.772431 eV Total energy + Delta-G solvation = -3111.868877 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.55839 -39.52719 -37.09708 -36.84541 -34.38268 -32.95103 -31.61786 -31.02132 -29.46960 -25.95232 -24.67539 -24.03664 -23.07773 -22.64451 -21.48164 -20.89128 -20.01869 -18.88034 -17.86861 -17.32823 -16.77000 -16.17960 -16.02501 -15.49806 -14.99424 -14.94398 -14.81150 -14.70213 -14.36782 -14.02465 -13.81585 -13.71449 -13.32241 -13.11958 -13.05144 -12.96474 -12.57622 -12.36479 -12.28544 -12.16883 -11.94616 -11.90756 -11.73955 -11.58630 -11.36649 -11.24404 -11.19178 -10.96970 -10.85003 -10.57343 -10.36962 -9.68110 -8.41896 -6.46900 1.25065 1.29773 1.40882 1.70873 2.23909 2.46257 2.99154 3.01031 3.63411 3.69060 3.84441 3.91375 4.05751 4.14586 4.25442 4.29869 4.39009 4.46439 4.51438 4.58108 4.63680 4.68097 4.73457 4.75380 4.77398 4.84044 4.88777 5.04363 5.07309 5.14773 5.20628 5.23144 5.24360 5.26162 5.29150 5.32708 5.37107 5.40024 5.44614 5.53233 5.57502 5.64505 5.79618 6.12614 6.57736 6.96186 7.19542 7.53639 8.73231 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024078 B = 0.004742 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.616480 B = 5902.795394 C = 6012.685459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.122 4.122 3 C 0.242 3.758 4 H 0.027 0.973 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.037 3.963 8 N -0.928 5.928 9 Si 0.923 3.077 10 H -0.277 1.277 11 H -0.275 1.275 12 H -0.258 1.258 13 N -0.705 5.705 14 C 0.531 3.469 15 O -0.584 6.584 16 C -0.168 4.168 17 C -0.028 4.028 18 C -0.111 4.111 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.105 4.105 23 C -0.135 4.135 24 C -0.159 4.159 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.031 0.969 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.271 0.729 31 H 0.400 0.600 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.066 0.934 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.128 0.872 44 H 0.094 0.906 45 H 0.133 0.867 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.920 6.728 13.858 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.161 4.161 3 C 0.138 3.862 4 H 0.045 0.955 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.164 4.164 8 N -0.567 5.567 9 Si 0.748 3.252 10 H -0.202 1.202 11 H -0.201 1.201 12 H -0.183 1.183 13 N -0.354 5.354 14 C 0.319 3.681 15 O -0.466 6.466 16 C -0.171 4.171 17 C -0.047 4.047 18 C -0.148 4.148 19 C -0.157 4.157 20 C -0.151 4.151 21 C -0.156 4.156 22 C -0.142 4.142 23 C -0.172 4.172 24 C -0.195 4.195 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.236 0.764 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.056 0.944 42 H 0.092 0.908 43 H 0.146 0.854 44 H 0.112 0.888 45 H 0.151 0.849 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.249 6.677 13.034 21.875 hybrid contribution 0.550 -0.026 -1.198 1.319 sum -15.699 6.651 11.835 20.755 Atomic orbital electron populations 1.21744 0.95807 1.00195 1.01052 1.21964 0.94981 0.98024 1.01123 1.18894 0.92727 0.90020 0.84586 0.95515 1.21209 0.90109 1.50582 0.94580 0.92592 1.25545 0.95445 0.93947 1.01424 1.69976 1.09497 1.50203 1.26975 0.86106 0.79781 0.79121 0.80161 1.20229 1.20084 1.18275 1.46377 1.16055 1.55785 1.17228 1.20156 0.81180 0.77828 0.88922 1.90612 1.54815 1.61657 1.39470 1.21680 1.02463 1.04184 0.88787 1.20320 0.91750 0.93759 0.98900 1.21722 0.98992 0.96265 0.97832 1.21550 0.94485 0.97774 1.01867 1.21522 0.97371 0.97726 0.98521 1.21539 0.98014 0.97264 0.98814 1.21472 0.93644 0.97604 1.01504 1.23135 1.02319 0.96741 0.94974 1.23416 0.94530 1.01851 0.99742 0.92427 0.93270 0.94944 0.93259 0.92025 0.92011 0.76436 0.93792 0.89932 0.91329 0.93247 0.90259 0.91356 0.90899 0.93633 0.91493 0.94384 0.90796 0.85356 0.88757 0.84923 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 8.47 71.98 0.61 -4.56 16 2 C -0.12 -5.30 5.61 30.59 0.17 -5.13 16 3 C 0.24 11.59 1.95 44.24 0.09 11.68 16 4 H 0.03 1.43 4.65 -2.39 -0.01 1.41 16 5 C -0.53 -28.80 9.04 25.60 0.23 -28.57 16 6 H 0.06 3.24 8.06 -2.91 -0.02 3.22 16 7 C 0.04 2.11 5.47 84.65 0.46 2.57 16 8 N -0.93 -55.64 13.96 21.45 0.30 -55.34 16 9 Si 0.92 45.59 27.04 68.60 1.86 47.45 16 10 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.26 -12.62 6.74 99.48 0.67 -11.95 16 13 N -0.70 -28.46 4.94 -446.10 -2.20 -30.66 16 14 C 0.53 20.35 5.91 87.66 0.52 20.87 16 15 O -0.58 -26.54 12.99 -3.06 -0.04 -26.58 16 16 C -0.17 -4.60 2.07 -52.90 -0.11 -4.71 16 17 C -0.03 -0.71 1.86 -10.80 -0.02 -0.73 16 18 C -0.11 -1.95 3.82 30.60 0.12 -1.84 16 19 C -0.12 -1.91 5.92 30.60 0.18 -1.73 16 20 C -0.11 -1.75 5.92 30.59 0.18 -1.57 16 21 C -0.12 -2.39 5.93 30.61 0.18 -2.21 16 22 C -0.10 -2.51 5.04 30.61 0.15 -2.36 16 23 C -0.13 -2.73 9.09 30.60 0.28 -2.45 16 24 C -0.16 -3.36 8.98 30.62 0.27 -3.08 16 25 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.05 1.92 5.70 -2.39 -0.01 1.91 16 27 H 0.03 1.39 7.71 -2.39 -0.02 1.37 16 28 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 30 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 31 H 0.40 14.45 6.64 -92.71 -0.62 13.83 16 32 H 0.04 1.39 7.99 -2.39 -0.02 1.37 16 33 H 0.08 1.16 7.03 -2.39 -0.02 1.14 16 34 H 0.07 1.18 6.88 -2.39 -0.02 1.17 16 35 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.04 1.16 7.54 -2.39 -0.02 1.15 16 42 H 0.07 1.49 7.42 -2.39 -0.02 1.48 16 43 H 0.13 1.92 7.07 -2.39 -0.02 1.90 16 44 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.13 2.14 5.87 -2.38 -0.01 2.13 16 46 H 0.09 2.15 6.58 -2.39 -0.02 2.13 16 Total: -1.00 -66.47 343.84 3.53 -62.94 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.30 Total: 25.99 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 3.32 Total: -23.81 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -1.90 Total: -86.00 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.04 Total: -26.58 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.86 Total: 47.45 kcal Total: -66.47 3.53 -62.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907386482.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.989 kcal (2) G-P(sol) polarization free energy of solvation -66.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds