Wall clock time and date at job start Tue Mar 31 2020 02:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46615 * 2 1 4 4 H 1.08999 * 109.47156 * 55.00260 * 3 2 1 5 5 C 1.50704 * 109.46739 * 175.00139 * 3 2 1 6 6 H 1.07997 * 120.00150 * 119.99942 * 5 3 2 7 7 C 1.37877 * 119.99611 * 299.99811 * 5 3 2 8 8 N 1.31515 * 119.99778 * 180.02562 * 7 5 3 9 9 Si 1.86795 * 120.00342 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.47266 * 90.00030 * 9 7 5 11 11 H 1.48502 * 109.47269 * 209.99969 * 9 7 5 12 12 H 1.48501 * 109.47432 * 330.00013 * 9 7 5 13 13 N 1.46495 * 109.47054 * 294.99892 * 3 2 1 14 14 C 1.34777 * 120.00113 * 85.00359 * 13 3 2 15 15 O 1.21280 * 119.99930 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00013 * 179.97438 * 14 13 3 17 17 C 1.53000 * 115.55188 * 185.38076 * 16 14 13 18 18 C 1.52992 * 109.47353 * 297.74191 * 17 16 14 19 19 C 1.53004 * 109.47346 * 179.97438 * 18 17 16 20 20 C 1.52995 * 109.46975 * 299.99939 * 19 18 17 21 21 C 1.53004 * 109.47404 * 59.99544 * 20 19 18 22 22 C 1.52995 * 109.47051 * 300.00310 * 21 20 19 23 23 C 1.53001 * 117.50054 * 331.05546 * 16 14 13 24 24 C 1.53006 * 117.49847 * 39.71775 * 16 14 13 25 25 H 1.09003 * 109.47249 * 59.99979 * 1 2 3 26 26 H 1.08997 * 109.47088 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47736 * 299.99990 * 1 2 3 28 28 H 1.08999 * 109.47293 * 240.00287 * 2 1 3 29 29 H 1.08991 * 109.47239 * 119.99564 * 2 1 3 30 30 H 0.96999 * 120.00403 * 180.02562 * 8 7 5 31 31 H 0.97002 * 119.99698 * 265.00277 * 13 3 2 32 32 H 1.08999 * 109.47389 * 177.73706 * 17 16 14 33 33 H 1.09000 * 109.46942 * 299.99835 * 18 17 16 34 34 H 1.08999 * 109.47269 * 59.99441 * 18 17 16 35 35 H 1.08999 * 109.47089 * 59.99703 * 19 18 17 36 36 H 1.08994 * 109.47128 * 179.97438 * 19 18 17 37 37 H 1.09005 * 109.47397 * 299.99653 * 20 19 18 38 38 H 1.09000 * 109.47322 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.47313 * 179.97438 * 21 20 19 40 40 H 1.08999 * 109.46818 * 60.00139 * 21 20 19 41 41 H 1.08999 * 109.47170 * 299.99613 * 22 21 20 42 42 H 1.09007 * 109.47041 * 179.97438 * 22 21 20 43 43 H 1.08998 * 117.50154 * 214.99661 * 23 16 14 44 44 H 1.08997 * 117.49740 * 0.02580 * 23 16 14 45 45 H 1.09001 * 117.49855 * 359.97301 * 24 16 14 46 46 H 1.08998 * 117.50069 * 144.97110 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4445 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1431 0.8786 1.2280 8 7 5.4538 0.8806 1.3363 9 14 3.0963 0.1090 2.5700 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8751 12 1 1.7875 0.8074 2.6387 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3670 15 8 -0.3394 2.6327 -0.4341 16 6 0.0365 3.3386 -2.6545 17 6 -1.3135 4.0583 -2.6322 18 6 -2.4278 3.0441 -2.3669 19 6 -3.7778 3.7639 -2.3440 20 6 -3.7743 4.8191 -1.2363 21 6 -2.6599 5.8334 -1.5015 22 6 -1.3101 5.1136 -1.5244 23 6 1.1505 3.9527 -3.5046 24 6 0.4575 2.6671 -3.9633 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8899 30 1 5.8770 0.4822 2.1129 31 1 2.2718 2.1232 -1.9977 32 1 -1.4836 4.5415 -3.5943 33 1 -2.4300 2.2920 -3.1559 34 1 -2.2578 2.5608 -1.4048 35 1 -3.9481 4.2474 -3.3060 36 1 -4.5717 3.0412 -2.1555 37 1 -3.6041 4.3356 -0.2743 38 1 -4.7359 5.3323 -1.2203 39 1 -2.6577 6.5855 -0.7126 40 1 -2.8302 6.3170 -2.4634 41 1 -1.1398 4.6300 -0.5625 42 1 -0.5162 5.8361 -1.7138 43 1 0.9217 4.8695 -4.0480 44 1 2.1717 3.8688 -3.1328 45 1 1.0231 1.7380 -3.8930 46 1 -0.2274 2.7378 -4.8083 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907386483.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:47 Heat of formation + Delta-G solvation = -40.676683 kcal Electronic energy + Delta-G solvation = -23552.053192 eV Core-core repulsion = 20441.192593 eV Total energy + Delta-G solvation = -3110.860599 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.28063 -37.94082 -36.26512 -35.20713 -32.32153 -31.39741 -30.58469 -30.20476 -27.52867 -24.20266 -22.91073 -22.81237 -22.02800 -21.84349 -20.03712 -19.66588 -19.08822 -16.99947 -16.19288 -15.72224 -15.38454 -14.76541 -14.38547 -14.16332 -13.95442 -13.92062 -13.54972 -13.21417 -12.82759 -12.60953 -12.26460 -12.22154 -12.03721 -11.87180 -11.76373 -11.49785 -11.13922 -11.07881 -10.97265 -10.86998 -10.76399 -10.60651 -10.34935 -10.26402 -9.91864 -9.84469 -9.58972 -9.49471 -9.21765 -8.82304 -8.74245 -8.01115 -6.21139 -4.23395 3.01257 3.23315 3.35306 3.40392 3.96059 4.12322 4.31560 4.56398 4.73820 4.83304 4.93456 5.07776 5.10305 5.13193 5.36587 5.48113 5.56890 5.63106 5.65482 5.68327 5.70676 5.75435 5.81170 5.94206 5.99075 6.03731 6.06358 6.09149 6.11122 6.19623 6.28547 6.32193 6.40810 6.45770 6.58709 6.66202 6.71420 6.79941 6.88242 6.98038 7.29133 7.34459 7.54235 8.18228 8.56493 8.76898 9.01731 9.40255 10.91005 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023132 B = 0.005214 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.163016 B = 5368.915140 C = 5750.778406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.244 3.756 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.079 0.921 7 C 0.079 3.921 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.260 1.260 13 N -0.701 5.701 14 C 0.541 3.459 15 O -0.540 6.540 16 C -0.148 4.148 17 C -0.024 4.024 18 C -0.120 4.120 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.115 4.115 22 C -0.121 4.121 23 C -0.162 4.162 24 C -0.160 4.160 25 H 0.054 0.946 26 H 0.030 0.970 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.267 0.733 31 H 0.392 0.608 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.054 0.946 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.100 0.900 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.195 5.855 -10.063 18.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.141 3.859 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.097 0.903 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.349 5.349 14 C 0.326 3.674 15 O -0.419 6.419 16 C -0.151 4.151 17 C -0.043 4.043 18 C -0.158 4.158 19 C -0.152 4.152 20 C -0.156 4.156 21 C -0.152 4.152 22 C -0.159 4.159 23 C -0.199 4.199 24 C -0.198 4.198 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.225 0.775 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.561 5.769 -9.252 18.190 hybrid contribution 0.043 -0.527 0.299 0.608 sum -14.517 5.242 -8.953 17.843 Atomic orbital electron populations 1.21875 0.96898 0.98950 1.02341 1.22280 0.94409 1.00016 1.00966 1.19123 0.95511 0.88421 0.82892 0.93330 1.21056 0.88692 1.39716 1.07776 0.90320 1.24829 0.94844 0.95148 0.97655 1.69868 1.08695 1.44556 1.29841 0.86902 0.80983 0.79936 0.80892 1.20293 1.22212 1.18451 1.46152 1.14912 1.56057 1.17819 1.19258 0.82208 0.78396 0.87503 1.90582 1.51331 1.59912 1.40099 1.21817 0.97586 1.04319 0.91420 1.20385 0.90534 0.94937 0.98454 1.21667 0.93089 0.97365 1.03649 1.21490 0.97535 0.97815 0.98395 1.21522 0.97847 0.96861 0.99417 1.21488 0.95283 0.97576 1.00871 1.21670 0.96151 0.97129 1.00931 1.23111 0.97157 0.97367 1.02312 1.23068 1.03339 0.97233 0.96128 0.92744 0.95132 0.92888 0.92448 0.92880 0.92310 0.77470 0.91685 0.92892 0.89275 0.92781 0.92478 0.91668 0.92802 0.92414 0.92761 0.89409 0.92732 0.88157 0.87899 0.88143 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.52 37.16 0.32 -2.55 16 2 C -0.14 -3.05 5.11 -26.73 -0.14 -3.19 16 3 C 0.24 5.72 1.83 -69.08 -0.13 5.59 16 4 H 0.05 1.27 6.64 -51.93 -0.34 0.92 16 5 C -0.53 -14.35 9.31 -34.44 -0.32 -14.67 16 6 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 7 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 8 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 9 Si 0.88 21.79 24.41 -169.99 -4.15 17.64 16 10 H -0.28 -6.62 6.83 56.52 0.39 -6.23 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 13 N -0.70 -13.66 4.85 -54.93 -0.27 -13.93 16 14 C 0.54 9.79 5.68 -10.99 -0.06 9.72 16 15 O -0.54 -11.08 9.76 5.56 0.05 -11.03 16 16 C -0.15 -2.06 1.59 -155.66 -0.25 -2.31 16 17 C -0.02 -0.31 1.93 -90.62 -0.17 -0.49 16 18 C -0.12 -1.57 5.01 -26.73 -0.13 -1.71 16 19 C -0.11 -1.28 5.92 -26.73 -0.16 -1.43 16 20 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 21 C -0.11 -1.30 5.92 -26.73 -0.16 -1.46 16 22 C -0.12 -1.64 4.96 -26.73 -0.13 -1.78 16 23 C -0.16 -1.91 9.57 -26.69 -0.26 -2.17 16 24 C -0.16 -1.84 9.62 -26.69 -0.26 -2.10 16 25 H 0.05 1.06 5.65 -51.93 -0.29 0.77 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.12 7.85 -51.93 -0.41 0.71 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 1.24 3.21 -51.93 -0.17 1.07 16 30 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.39 6.93 6.75 -40.82 -0.28 6.65 16 32 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.09 1.43 6.07 -51.93 -0.32 1.11 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.09 1.46 6.07 -51.93 -0.32 1.15 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.10 1.28 7.25 -51.93 -0.38 0.90 16 45 H 0.10 1.19 7.87 -51.93 -0.41 0.78 16 46 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 339.24 15.07 5.11 5.11 Total: -1.00 -29.26 339.24 -8.58 -37.84 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -8.00 Total: 7.92 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -2.10 Total: -17.92 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.51 Total: -39.56 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.05 Total: -11.03 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.15 Total: 17.64 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.26 -8.58 -37.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907386483.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.839 kcal (2) G-P(sol) polarization free energy of solvation -29.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds