Wall clock time and date at job start Tue Mar 31 2020 02:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46615 * 2 1 4 4 H 1.08999 * 109.47156 * 55.00260 * 3 2 1 5 5 C 1.50704 * 109.46739 * 175.00139 * 3 2 1 6 6 H 1.07997 * 120.00150 * 119.99942 * 5 3 2 7 7 C 1.37877 * 119.99611 * 299.99811 * 5 3 2 8 8 N 1.31515 * 119.99778 * 180.02562 * 7 5 3 9 9 Si 1.86795 * 120.00342 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.47266 * 90.00030 * 9 7 5 11 11 H 1.48502 * 109.47269 * 209.99969 * 9 7 5 12 12 H 1.48501 * 109.47432 * 330.00013 * 9 7 5 13 13 N 1.46495 * 109.47054 * 294.99892 * 3 2 1 14 14 C 1.34777 * 120.00113 * 85.00359 * 13 3 2 15 15 O 1.21280 * 119.99930 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00013 * 179.97438 * 14 13 3 17 17 C 1.53000 * 115.55188 * 185.38076 * 16 14 13 18 18 C 1.52992 * 109.47353 * 297.74191 * 17 16 14 19 19 C 1.53004 * 109.47346 * 179.97438 * 18 17 16 20 20 C 1.52995 * 109.46975 * 299.99939 * 19 18 17 21 21 C 1.53004 * 109.47404 * 59.99544 * 20 19 18 22 22 C 1.52995 * 109.47051 * 300.00310 * 21 20 19 23 23 C 1.53001 * 117.50054 * 331.05546 * 16 14 13 24 24 C 1.53006 * 117.49847 * 39.71775 * 16 14 13 25 25 H 1.09003 * 109.47249 * 59.99979 * 1 2 3 26 26 H 1.08997 * 109.47088 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47736 * 299.99990 * 1 2 3 28 28 H 1.08999 * 109.47293 * 240.00287 * 2 1 3 29 29 H 1.08991 * 109.47239 * 119.99564 * 2 1 3 30 30 H 0.96999 * 120.00403 * 180.02562 * 8 7 5 31 31 H 0.97002 * 119.99698 * 265.00277 * 13 3 2 32 32 H 1.08999 * 109.47389 * 177.73706 * 17 16 14 33 33 H 1.09000 * 109.46942 * 299.99835 * 18 17 16 34 34 H 1.08999 * 109.47269 * 59.99441 * 18 17 16 35 35 H 1.08999 * 109.47089 * 59.99703 * 19 18 17 36 36 H 1.08994 * 109.47128 * 179.97438 * 19 18 17 37 37 H 1.09005 * 109.47397 * 299.99653 * 20 19 18 38 38 H 1.09000 * 109.47322 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.47313 * 179.97438 * 21 20 19 40 40 H 1.08999 * 109.46818 * 60.00139 * 21 20 19 41 41 H 1.08999 * 109.47170 * 299.99613 * 22 21 20 42 42 H 1.09007 * 109.47041 * 179.97438 * 22 21 20 43 43 H 1.08998 * 117.50154 * 214.99661 * 23 16 14 44 44 H 1.08997 * 117.49740 * 0.02580 * 23 16 14 45 45 H 1.09001 * 117.49855 * 359.97301 * 24 16 14 46 46 H 1.08998 * 117.50069 * 144.97110 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4445 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1431 0.8786 1.2280 8 7 5.4538 0.8806 1.3363 9 14 3.0963 0.1090 2.5700 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8751 12 1 1.7875 0.8074 2.6387 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3670 15 8 -0.3394 2.6327 -0.4341 16 6 0.0365 3.3386 -2.6545 17 6 -1.3135 4.0583 -2.6322 18 6 -2.4278 3.0441 -2.3669 19 6 -3.7778 3.7639 -2.3440 20 6 -3.7743 4.8191 -1.2363 21 6 -2.6599 5.8334 -1.5015 22 6 -1.3101 5.1136 -1.5244 23 6 1.1505 3.9527 -3.5046 24 6 0.4575 2.6671 -3.9633 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8899 30 1 5.8770 0.4822 2.1129 31 1 2.2718 2.1232 -1.9977 32 1 -1.4836 4.5415 -3.5943 33 1 -2.4300 2.2920 -3.1559 34 1 -2.2578 2.5608 -1.4048 35 1 -3.9481 4.2474 -3.3060 36 1 -4.5717 3.0412 -2.1555 37 1 -3.6041 4.3356 -0.2743 38 1 -4.7359 5.3323 -1.2203 39 1 -2.6577 6.5855 -0.7126 40 1 -2.8302 6.3170 -2.4634 41 1 -1.1398 4.6300 -0.5625 42 1 -0.5162 5.8361 -1.7138 43 1 0.9217 4.8695 -4.0480 44 1 2.1717 3.8688 -3.1328 45 1 1.0231 1.7380 -3.8930 46 1 -0.2274 2.7378 -4.8083 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907386483.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:46 Heat of formation + Delta-G solvation = -57.485057 kcal Electronic energy + Delta-G solvation = -23552.782057 eV Core-core repulsion = 20441.192593 eV Total energy + Delta-G solvation = -3111.589465 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.54364 -39.19445 -37.34060 -36.91826 -34.35578 -33.03702 -31.53693 -31.20656 -29.44118 -25.52563 -24.51506 -23.84110 -23.35350 -22.78068 -21.67070 -20.72591 -20.54577 -18.72629 -17.72976 -17.30442 -16.75935 -16.10306 -15.97182 -15.32516 -15.08515 -15.02714 -14.90101 -14.77244 -14.25984 -14.04507 -13.78644 -13.60671 -13.33962 -13.25175 -12.97289 -12.94675 -12.77469 -12.43008 -12.36976 -12.13578 -11.92236 -11.83301 -11.76517 -11.41500 -11.30530 -11.26432 -11.22838 -10.87149 -10.79046 -10.56413 -10.22584 -9.68505 -8.40027 -6.45036 1.24081 1.32414 1.42281 1.71770 2.23767 2.50856 2.95094 3.04125 3.57528 3.69928 3.89597 3.94203 4.08333 4.14495 4.22693 4.29445 4.32678 4.47228 4.55004 4.58228 4.72261 4.72518 4.73959 4.76410 4.80621 4.84115 4.89765 4.99142 5.03252 5.11559 5.12313 5.19445 5.22391 5.23472 5.35646 5.38805 5.41198 5.47050 5.48572 5.50897 5.52672 5.67423 5.83134 6.15103 6.56894 6.95976 7.19320 7.56876 8.75310 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023132 B = 0.005214 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.163016 B = 5368.915140 C = 5750.778406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.136 4.136 3 C 0.253 3.747 4 H 0.019 0.981 5 C -0.532 4.532 6 H 0.054 0.946 7 C 0.031 3.969 8 N -0.933 5.933 9 Si 0.936 3.064 10 H -0.260 1.260 11 H -0.293 1.293 12 H -0.263 1.263 13 N -0.705 5.705 14 C 0.536 3.464 15 O -0.567 6.567 16 C -0.167 4.167 17 C -0.019 4.019 18 C -0.119 4.119 19 C -0.111 4.111 20 C -0.120 4.120 21 C -0.111 4.111 22 C -0.121 4.121 23 C -0.153 4.153 24 C -0.141 4.141 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.042 0.958 30 H 0.270 0.730 31 H 0.400 0.600 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.046 0.954 42 H 0.054 0.946 43 H 0.126 0.874 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.262 6.136 -12.313 21.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.174 4.174 3 C 0.148 3.852 4 H 0.037 0.963 5 C -0.570 4.570 6 H 0.072 0.928 7 C -0.169 4.169 8 N -0.572 5.572 9 Si 0.763 3.237 10 H -0.186 1.186 11 H -0.220 1.220 12 H -0.187 1.187 13 N -0.354 5.354 14 C 0.324 3.676 15 O -0.447 6.447 16 C -0.170 4.170 17 C -0.037 4.037 18 C -0.156 4.156 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.148 4.148 22 C -0.159 4.159 23 C -0.190 4.190 24 C -0.178 4.178 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.235 0.765 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.145 0.855 44 H 0.109 0.891 45 H 0.114 0.886 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.640 6.053 -11.528 21.129 hybrid contribution 0.716 -0.548 0.976 1.328 sum -15.924 5.505 -10.552 19.881 Atomic orbital electron populations 1.21739 0.95129 1.00366 1.01620 1.22191 0.95893 0.98552 1.00800 1.18718 0.93021 0.89537 0.83954 0.96304 1.21296 0.90448 1.38446 1.06853 0.92759 1.25521 0.95691 0.95882 0.99765 1.69973 1.10219 1.46188 1.30867 0.86045 0.79257 0.79935 0.78426 1.18571 1.22047 1.18723 1.46012 1.16024 1.56676 1.16726 1.20012 0.81045 0.77587 0.88923 1.90583 1.51893 1.60583 1.41657 1.21734 0.99126 1.06101 0.90059 1.20408 0.89619 0.94446 0.99245 1.21609 0.94450 0.97739 1.01828 1.21475 0.96404 0.97714 0.99225 1.21526 0.98789 0.97029 0.98369 1.21470 0.93879 0.97372 1.02088 1.21619 0.97585 0.97372 0.99317 1.23216 0.95789 0.98835 1.01161 1.23202 1.02875 0.96806 0.94953 0.92513 0.92518 0.94612 0.91511 0.94011 0.92091 0.76517 0.88738 0.92046 0.93022 0.90582 0.92093 0.94249 0.90879 0.92439 0.90516 0.93497 0.92704 0.85540 0.89098 0.88630 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 8.52 71.98 0.61 -4.54 16 2 C -0.14 -5.95 5.11 30.60 0.16 -5.79 16 3 C 0.25 12.07 1.83 44.25 0.08 12.15 16 4 H 0.02 1.03 6.64 -2.39 -0.02 1.01 16 5 C -0.53 -29.35 9.31 25.60 0.24 -29.11 16 6 H 0.05 3.19 7.98 -2.91 -0.02 3.16 16 7 C 0.03 1.78 5.45 84.65 0.46 2.24 16 8 N -0.93 -56.47 13.96 21.45 0.30 -56.17 16 9 Si 0.94 45.57 24.41 68.60 1.67 47.24 16 10 H -0.26 -11.91 6.83 99.48 0.68 -11.23 16 11 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 12 H -0.26 -12.78 6.53 99.48 0.65 -12.13 16 13 N -0.71 -27.80 4.85 -446.09 -2.16 -29.97 16 14 C 0.54 19.50 5.68 87.66 0.50 19.99 16 15 O -0.57 -23.96 9.76 -3.03 -0.03 -23.99 16 16 C -0.17 -4.35 1.59 -52.93 -0.08 -4.44 16 17 C -0.02 -0.43 1.93 -10.79 -0.02 -0.45 16 18 C -0.12 -2.90 5.01 30.59 0.15 -2.75 16 19 C -0.11 -2.18 5.92 30.59 0.18 -2.00 16 20 C -0.12 -2.51 5.92 30.59 0.18 -2.33 16 21 C -0.11 -2.31 5.92 30.59 0.18 -2.12 16 22 C -0.12 -3.18 4.96 30.59 0.15 -3.03 16 23 C -0.15 -3.21 9.57 30.62 0.29 -2.91 16 24 C -0.14 -2.79 9.62 30.62 0.29 -2.50 16 25 H 0.06 2.18 5.65 -2.39 -0.01 2.17 16 26 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 27 H 0.03 1.50 7.85 -2.39 -0.02 1.48 16 28 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.04 1.92 3.21 -2.39 -0.01 1.91 16 30 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.40 14.25 6.75 -92.71 -0.63 13.63 16 32 H 0.09 1.70 8.11 -2.39 -0.02 1.68 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.05 1.66 6.07 -2.39 -0.01 1.65 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.05 1.62 6.07 -2.39 -0.01 1.60 16 42 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 43 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.09 2.15 7.25 -2.39 -0.02 2.13 16 45 H 0.10 2.02 7.87 -2.39 -0.02 2.00 16 46 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -65.49 339.24 3.40 -62.09 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.24 Total: 28.39 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 3.38 Total: -27.59 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -1.86 Total: -86.13 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.03 Total: -23.99 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.67 Total: 47.24 kcal Total: -65.49 3.40 -62.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907386483.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.602 kcal (2) G-P(sol) polarization free energy of solvation -65.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds