Wall clock time and date at job start Tue Mar 31 2020 02:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50693 * 120.00055 * 2 1 4 4 N 1.46898 * 109.46857 * 125.17222 * 3 2 1 5 5 C 1.46904 * 110.99964 * 199.74734 * 4 3 2 6 6 C 1.50705 * 109.47049 * 66.04407 * 5 4 3 7 7 H 1.07994 * 119.99875 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00054 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00083 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00040 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47062 * 89.99540 * 10 8 6 12 12 H 1.48499 * 109.47069 * 209.99636 * 10 8 6 13 13 H 1.48504 * 109.46739 * 329.99711 * 10 8 6 14 14 C 1.46901 * 111.00428 * 75.79714 * 4 3 2 15 15 C 1.52994 * 109.47232 * 199.84012 * 14 4 3 16 16 H 1.09000 * 109.48238 * 300.69203 * 15 14 4 17 17 C 1.53051 * 109.47767 * 180.68064 * 15 14 4 18 18 C 1.53147 * 109.41017 * 180.69266 * 17 15 14 19 19 C 1.53322 * 108.97996 * 58.61238 * 18 17 15 20 20 C 1.52814 * 108.91182 * 305.11425 * 19 18 17 21 21 C 1.53399 * 113.48163 * 185.10588 * 20 19 18 22 22 C 1.53851 * 86.98211 * 89.27316 * 21 20 19 23 23 C 1.53427 * 113.44066 * 282.89216 * 20 19 18 24 24 O 1.42578 * 112.93557 * 53.93828 * 20 19 18 25 25 H 1.08003 * 119.99712 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.00376 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.99712 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47209 * 5.16596 * 3 2 1 29 29 H 1.09002 * 109.47160 * 245.16667 * 3 2 1 30 30 H 1.08998 * 109.47218 * 186.04293 * 5 4 3 31 31 H 1.09006 * 109.46958 * 306.04744 * 5 4 3 32 32 H 0.96993 * 120.00111 * 180.02562 * 9 8 6 33 33 H 1.09003 * 109.47103 * 79.83592 * 14 4 3 34 34 H 1.09002 * 109.47098 * 319.83735 * 14 4 3 35 35 H 1.09004 * 109.47738 * 60.70938 * 17 15 14 36 36 H 1.09004 * 109.48921 * 300.68275 * 17 15 14 37 37 H 1.08997 * 109.55077 * 298.76541 * 18 17 15 38 38 H 1.08996 * 109.63717 * 178.51420 * 18 17 15 39 39 H 1.08993 * 109.56242 * 185.28412 * 19 18 17 40 40 H 1.08990 * 109.56225 * 64.93927 * 19 18 17 41 41 H 1.08999 * 113.62981 * 203.79721 * 21 20 19 42 42 H 1.09003 * 113.62699 * 334.75190 * 21 20 19 43 43 H 1.09000 * 113.60192 * 270.60209 * 22 21 20 44 44 H 1.08999 * 113.67807 * 139.74486 * 22 21 20 45 45 H 1.09001 * 113.62888 * 25.20800 * 23 20 19 46 46 H 1.08996 * 113.63169 * 156.07914 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9992 1.3301 1.1321 5 6 3.4004 2.7064 1.4531 6 6 2.2054 3.4731 1.9585 7 1 1.2443 2.9865 2.0341 8 6 2.3393 4.7956 2.3243 9 7 3.5099 5.3880 2.2328 10 14 0.8582 5.7458 2.9515 11 1 0.7682 5.6046 4.4270 12 1 1.0056 7.1809 2.5995 13 1 -0.3764 5.2069 2.3264 14 6 4.1731 0.4887 0.8638 15 6 4.8603 0.1358 2.1844 16 1 5.1652 1.0512 2.6915 17 6 6.0930 -0.7268 1.9036 18 6 6.7698 -1.0935 3.2276 19 6 5.7659 -1.8455 4.1093 20 6 4.5077 -0.9924 4.2655 21 6 3.4789 -1.5920 5.2327 22 6 4.2015 -0.8208 6.3508 23 6 4.6723 0.1609 5.2639 24 8 3.9507 -0.5899 3.0163 25 1 -0.5400 0.9354 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3588 2.1314 0.0925 29 1 2.6189 1.4039 -0.9327 30 1 4.1730 2.6897 2.2218 31 1 3.7897 3.1897 0.5570 32 1 3.6041 6.3183 2.4905 33 1 4.8703 1.0308 0.2248 34 1 3.8573 -0.4264 0.3627 35 1 6.7921 -0.1696 1.2800 36 1 5.7898 -1.6369 1.3860 37 1 7.0929 -0.1850 3.7360 38 1 7.6332 -1.7297 3.0337 39 1 6.2065 -2.0289 5.0892 40 1 5.5074 -2.7946 3.6401 41 1 2.4597 -1.2494 5.0539 42 1 3.5516 -2.6751 5.3315 43 1 5.0134 -1.3819 6.8136 44 1 3.5267 -0.3734 7.0806 45 1 5.7048 0.4875 5.3878 46 1 3.9839 0.9885 5.0928 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930542338.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:53 Heat of formation + Delta-G solvation = -27.464182 kcal Electronic energy + Delta-G solvation = -23310.052293 eV Core-core repulsion = 20199.764631 eV Total energy + Delta-G solvation = -3110.287662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.38960 -38.97850 -37.14211 -34.98031 -34.50175 -33.99087 -31.36721 -29.16880 -27.51210 -26.70536 -25.78714 -24.78403 -23.79644 -22.07151 -21.51884 -20.42645 -19.41900 -18.54807 -17.58922 -17.06865 -16.60345 -16.33278 -16.20514 -16.04023 -15.35641 -14.97413 -14.78339 -14.50375 -14.22107 -13.98185 -13.85299 -13.55368 -13.34805 -13.20146 -13.14604 -12.77712 -12.63969 -12.49998 -12.44644 -12.14654 -11.96362 -11.87918 -11.85073 -11.71726 -11.50606 -11.28993 -11.15591 -10.74788 -10.60952 -10.21038 -10.05951 -8.90895 -8.21378 -6.30157 1.37162 1.38817 1.48911 1.50585 2.38399 2.85853 3.10682 3.35121 3.62669 3.71888 3.83287 3.88816 3.95500 4.04076 4.16358 4.21345 4.30620 4.37295 4.39653 4.46367 4.59092 4.65175 4.74489 4.78111 4.83659 4.89362 4.92387 4.95735 5.03312 5.03868 5.05101 5.07049 5.12592 5.14247 5.23035 5.25929 5.37022 5.42731 5.57023 5.64862 5.78449 6.02961 6.06859 6.38565 6.57521 6.72233 6.85712 7.38753 8.89608 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013403 B = 0.006037 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.580602 B = 4636.997865 C = 5343.776855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.138 4.138 3 C 0.084 3.916 4 N -0.529 5.529 5 C 0.214 3.786 6 C -0.518 4.518 7 H 0.057 0.943 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.275 1.275 12 H -0.279 1.279 13 H -0.265 1.265 14 C 0.061 3.939 15 C 0.106 3.894 16 H 0.022 0.978 17 C -0.144 4.144 18 C -0.118 4.118 19 C -0.116 4.116 20 C 0.077 3.923 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.172 4.172 24 O -0.364 6.364 25 H 0.087 0.913 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.063 0.937 29 H 0.031 0.969 30 H 0.002 0.998 31 H -0.041 1.041 32 H 0.264 0.736 33 H 0.036 0.964 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.162 -16.736 2.641 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.156 4.156 3 C -0.043 4.043 4 N -0.253 5.253 5 C 0.087 3.913 6 C -0.556 4.556 7 H 0.075 0.925 8 C -0.194 4.194 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.201 1.201 12 H -0.204 1.204 13 H -0.189 1.189 14 C -0.067 4.067 15 C 0.048 3.952 16 H 0.040 0.960 17 C -0.182 4.182 18 C -0.156 4.156 19 C -0.153 4.153 20 C 0.037 3.963 21 C -0.155 4.155 22 C -0.161 4.161 23 C -0.209 4.209 24 O -0.284 6.284 25 H 0.105 0.895 26 H 0.137 0.863 27 H 0.132 0.868 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.020 0.980 31 H -0.024 1.024 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.113 0.887 43 H 0.126 0.874 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.818 -16.791 3.013 17.481 hybrid contribution 0.107 1.803 -0.426 1.856 sum 3.925 -14.988 2.586 15.708 Atomic orbital electron populations 1.23874 0.95537 1.02157 1.01155 1.22826 0.96219 0.97329 0.99267 1.21142 0.95495 0.96571 0.91106 1.61980 1.14198 1.11320 1.37780 1.19347 0.95220 0.83923 0.92768 1.21409 0.95996 0.95597 1.42597 0.92487 1.25849 0.98952 0.98627 0.95991 1.70077 1.25059 1.12612 1.49616 0.85467 0.79478 0.77553 0.78665 1.20102 1.20443 1.18912 1.22174 0.91976 0.97465 0.95092 1.21897 0.89631 0.92912 0.90771 0.96002 1.22134 0.96459 1.00612 0.99014 1.21594 0.98538 1.00585 0.94863 1.21820 0.93520 0.98294 1.01659 1.23000 0.95425 0.94863 0.82978 1.22929 0.97895 1.00808 0.93820 1.22716 1.00696 0.97147 0.95493 1.23457 1.01022 0.97700 0.98765 1.88023 1.38266 1.73384 1.28687 0.89507 0.86311 0.86813 0.91896 0.95119 0.97951 1.02360 0.92748 0.94641 0.89488 0.90618 0.90038 0.92867 0.88885 0.88789 0.90045 0.91323 0.88720 0.87420 0.90985 0.91527 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.79 14.32 67.78 0.97 -4.82 16 2 C -0.14 -4.70 9.33 25.64 0.24 -4.46 16 3 C 0.08 3.50 5.24 85.56 0.45 3.95 16 4 N -0.53 -24.38 4.22 -905.37 -3.82 -28.20 16 5 C 0.21 11.90 4.55 85.56 0.39 12.29 16 6 C -0.52 -30.63 8.23 25.60 0.21 -30.42 16 7 H 0.06 3.38 7.31 -2.91 -0.02 3.35 16 8 C 0.00 0.22 5.46 84.65 0.46 0.68 16 9 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 10 Si 0.96 45.84 29.54 68.60 2.03 47.87 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 14 C 0.06 2.33 4.49 86.30 0.39 2.72 16 15 C 0.11 3.83 2.60 30.61 0.08 3.91 16 16 H 0.02 0.95 6.47 -2.39 -0.02 0.94 16 17 C -0.14 -3.77 5.36 30.66 0.16 -3.61 16 18 C -0.12 -2.60 5.95 30.75 0.18 -2.42 16 19 C -0.12 -2.47 5.17 30.64 0.16 -2.31 16 20 C 0.08 2.24 1.16 -10.58 -0.01 2.23 16 21 C -0.12 -2.98 7.50 31.02 0.23 -2.75 16 22 C -0.12 -2.85 7.73 31.17 0.24 -2.61 16 23 C -0.17 -5.35 6.90 31.02 0.21 -5.14 16 24 O -0.36 -13.55 10.04 -148.98 -1.50 -15.05 16 25 H 0.09 2.78 7.84 -2.91 -0.02 2.75 16 26 H 0.12 2.91 8.06 -2.91 -0.02 2.88 16 27 H 0.11 3.51 7.28 -2.91 -0.02 3.49 16 28 H 0.06 2.92 6.23 -2.39 -0.01 2.91 16 29 H 0.03 1.22 8.00 -2.39 -0.02 1.20 16 30 H 0.00 0.15 6.63 -2.39 -0.02 0.13 16 31 H -0.04 -2.47 8.12 -2.38 -0.02 -2.49 16 32 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 33 H 0.04 1.35 8.00 -2.39 -0.02 1.33 16 34 H 0.09 2.91 6.81 -2.39 -0.02 2.89 16 35 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.05 1.29 7.61 -2.39 -0.02 1.27 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.09 1.59 7.31 -2.39 -0.02 1.57 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.09 1.87 8.09 -2.39 -0.02 1.85 16 43 H 0.11 1.85 7.61 -2.39 -0.02 1.83 16 44 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.07 1.96 7.56 -2.39 -0.02 1.94 16 46 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -68.42 356.65 2.27 -66.15 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.91 Total: 19.19 kcal Atomic # 6 Polarization: -37.14 SS G_CDS: 4.37 Total: -32.77 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -3.54 Total: -85.38 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -1.50 Total: -15.05 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -68.42 2.27 -66.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930542338.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.684 kcal (2) G-P(sol) polarization free energy of solvation -68.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds