Wall clock time and date at job start Tue Mar 31 2020 02:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99890 * 2 1 4 4 N 1.46895 * 109.46782 * 125.49164 * 3 2 1 5 5 C 1.46902 * 111.00065 * 295.92591 * 4 3 2 6 6 C 1.50695 * 109.47220 * 292.47478 * 5 4 3 7 7 H 1.08002 * 119.99916 * 4.48474 * 6 5 4 8 8 C 1.37877 * 119.99772 * 184.48273 * 6 5 4 9 9 N 1.31507 * 120.00295 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99737 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47121 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46909 * 120.00335 * 10 8 6 13 13 H 1.48495 * 109.47413 * 239.99996 * 10 8 6 14 14 C 1.46908 * 111.00292 * 59.88324 * 4 3 2 15 15 C 1.53002 * 109.46925 * 76.83319 * 14 4 3 16 16 H 1.09002 * 109.47073 * 55.49265 * 15 14 4 17 17 C 1.53052 * 109.47255 * 175.50205 * 15 14 4 18 18 C 1.53151 * 109.40442 * 179.32099 * 17 15 14 19 19 C 1.53318 * 108.97538 * 301.37801 * 18 17 15 20 20 C 1.52809 * 108.91111 * 54.89006 * 19 18 17 21 21 C 1.53424 * 113.43676 * 77.09581 * 20 19 18 22 22 C 1.53839 * 86.97520 * 89.31550 * 21 20 19 23 23 C 1.53399 * 113.48762 * 174.88140 * 20 19 18 24 24 O 1.42586 * 112.93857 * 306.05951 * 20 19 18 25 25 H 1.08009 * 119.99976 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.00151 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.99789 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47442 * 5.48883 * 3 2 1 29 29 H 1.09002 * 109.47043 * 245.48844 * 3 2 1 30 30 H 1.08998 * 109.47105 * 52.47965 * 5 4 3 31 31 H 1.09000 * 109.46911 * 172.47379 * 5 4 3 32 32 H 0.97008 * 120.00139 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.46941 * 196.83838 * 14 4 3 34 34 H 1.09000 * 109.46588 * 316.83776 * 14 4 3 35 35 H 1.09007 * 109.48107 * 299.30138 * 17 15 14 36 36 H 1.09001 * 109.47983 * 59.34154 * 17 15 14 37 37 H 1.09005 * 109.55412 * 181.53334 * 18 17 15 38 38 H 1.08995 * 109.63989 * 61.27905 * 18 17 15 39 39 H 1.08995 * 109.56806 * 295.06260 * 19 18 17 40 40 H 1.09004 * 109.56705 * 174.71523 * 19 18 17 41 41 H 1.08999 * 113.63384 * 203.83812 * 21 20 19 42 42 H 1.09001 * 113.63084 * 334.78833 * 21 20 19 43 43 H 1.09001 * 113.60549 * 270.60061 * 22 21 20 44 44 H 1.09002 * 113.60552 * 139.72628 * 22 21 20 45 45 H 1.09003 * 113.62499 * 25.25198 * 23 20 19 46 46 H 1.08994 * 113.63235 * 156.20778 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0047 1.3271 1.1276 5 6 2.2901 1.2895 2.4106 6 6 1.5256 2.5745 2.5976 7 1 1.5074 3.3118 1.8086 8 6 0.8492 2.8090 3.7760 9 7 0.8717 1.9114 4.7369 10 14 -0.0979 4.4023 4.0082 11 1 0.0339 5.2388 2.7882 12 1 -1.5315 4.0959 4.2453 13 1 0.4504 5.1386 5.1753 14 6 3.9694 0.2235 1.0298 15 6 5.0278 0.5631 -0.0216 16 1 5.4929 1.5173 0.2260 17 6 6.0947 -0.5340 -0.0445 18 6 7.1441 -0.2011 -1.1091 19 6 6.4518 -0.0836 -2.4720 20 6 5.3215 0.9393 -2.3669 21 6 5.8114 2.3932 -2.3784 22 6 5.6852 2.3380 -3.9106 23 6 4.6352 1.2320 -3.7072 24 8 4.4099 0.6534 -1.3085 25 1 -0.5400 0.9354 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3593 2.1313 0.0983 29 1 2.6144 1.4066 -0.9351 30 1 1.5955 0.4495 2.4151 31 1 3.0075 1.1720 3.2227 32 1 0.3955 2.0763 5.5659 33 1 4.4515 0.0757 1.9962 34 1 3.4491 -0.6893 0.7399 35 1 6.5745 -0.5949 0.9324 36 1 5.6278 -1.4902 -0.2808 37 1 7.8906 -0.9946 -1.1463 38 1 7.6284 0.7440 -0.8633 39 1 6.0419 -1.0523 -2.7579 40 1 7.1728 0.2448 -3.2207 41 1 5.1190 3.0913 -1.9078 42 1 6.8368 2.5116 -2.0283 43 1 6.5903 1.9937 -4.4109 44 1 5.2793 3.2500 -4.3483 45 1 4.7148 0.4165 -4.4260 46 1 3.6178 1.6092 -3.6039 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930542340.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:58 Heat of formation + Delta-G solvation = -7.614169 kcal Electronic energy + Delta-G solvation = -23306.710391 eV Core-core repulsion = 20197.283490 eV Total energy + Delta-G solvation = -3109.426901 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.44258 -37.61378 -35.93126 -33.57069 -32.72810 -32.10157 -30.03585 -27.18053 -26.14626 -25.76199 -24.18972 -23.82286 -22.09209 -20.72707 -20.57224 -18.63812 -18.41241 -16.60564 -16.16208 -15.79409 -15.46854 -14.94280 -14.68983 -14.17930 -14.04475 -13.86309 -13.57884 -13.17521 -13.03102 -12.59671 -12.28688 -12.10299 -12.04956 -11.78685 -11.45077 -11.07546 -11.02313 -10.96601 -10.91095 -10.82688 -10.81330 -10.60154 -10.47472 -10.35245 -10.22454 -9.87110 -9.69351 -9.14049 -8.93485 -8.52177 -8.35333 -7.08370 -5.95232 -3.94863 3.03952 3.34948 3.42212 3.47236 3.90812 4.47721 4.52397 4.59357 4.70739 4.75762 4.81227 5.02685 5.14841 5.16934 5.37690 5.42954 5.55322 5.59376 5.63143 5.69859 5.77404 5.81162 5.82562 5.85326 5.89905 5.92614 5.97036 5.98317 6.07280 6.15309 6.23883 6.34415 6.41918 6.47727 6.52942 6.66615 6.99723 7.32627 7.38152 7.45671 7.56262 7.65127 7.89556 8.18884 8.36409 8.66059 9.12485 9.68307 11.15887 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.004613 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.907537 B = 6068.086080 C = 6198.658590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.085 3.915 4 N -0.525 5.525 5 C 0.190 3.810 6 C -0.498 4.498 7 H 0.061 0.939 8 C 0.054 3.946 9 N -0.900 5.900 10 Si 0.894 3.106 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.056 3.944 15 C 0.101 3.899 16 H 0.064 0.936 17 C -0.151 4.151 18 C -0.119 4.119 19 C -0.123 4.123 20 C 0.090 3.910 21 C -0.160 4.160 22 C -0.141 4.141 23 C -0.121 4.121 24 O -0.349 6.349 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.088 0.912 30 H -0.006 1.006 31 H 0.027 0.973 32 H 0.259 0.741 33 H 0.076 0.924 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.149 -4.257 -15.422 19.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.187 4.187 3 C -0.042 4.042 4 N -0.248 5.248 5 C 0.065 3.935 6 C -0.536 4.536 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.073 4.073 15 C 0.043 3.957 16 H 0.082 0.918 17 C -0.189 4.189 18 C -0.156 4.156 19 C -0.161 4.161 20 C 0.050 3.950 21 C -0.197 4.197 22 C -0.178 4.178 23 C -0.158 4.158 24 O -0.268 6.268 25 H 0.113 0.887 26 H 0.100 0.900 27 H 0.112 0.888 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.012 0.988 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.160 -3.848 -15.262 19.295 hybrid contribution -0.754 -0.077 0.521 0.920 sum 10.406 -3.925 -14.741 18.466 Atomic orbital electron populations 1.23650 0.96131 1.00811 1.02584 1.23593 0.96396 1.00240 0.98439 1.21442 0.94300 0.93502 0.94999 1.62343 1.17032 1.40896 1.04480 1.19771 0.92565 0.96668 0.84533 1.21172 1.29160 1.02802 1.00507 0.92038 1.24955 0.96905 0.96778 0.95968 1.69968 1.43516 1.34550 1.05976 0.86506 0.79520 0.83712 0.78068 1.19715 1.21220 1.21125 1.22147 0.94280 0.94161 0.96676 1.22180 0.93071 0.97091 0.83382 0.91813 1.22177 0.97224 1.00098 0.99394 1.21565 0.97706 1.01713 0.94633 1.21819 0.97122 0.99382 0.97769 1.22600 0.90656 0.92970 0.88815 1.23502 1.01850 0.98123 0.96254 1.22718 0.99141 0.99266 0.96677 1.22979 0.99633 0.98413 0.94824 1.88043 1.32345 1.91603 1.14826 0.88694 0.90021 0.88766 0.90598 0.89430 0.98789 0.95466 0.93158 0.90527 0.94501 0.90987 0.91430 0.91855 0.91793 0.91204 0.91131 0.88919 0.91682 0.90416 0.91090 0.91302 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.62 14.32 29.01 0.42 -3.21 16 2 C -0.17 -3.24 7.63 -36.03 -0.27 -3.51 16 3 C 0.09 1.74 5.37 -4.98 -0.03 1.71 16 4 N -0.53 -11.49 4.61 -237.52 -1.10 -12.58 16 5 C 0.19 5.00 4.56 -4.98 -0.02 4.97 16 6 C -0.50 -14.15 8.56 -34.44 -0.29 -14.44 16 7 H 0.06 1.75 7.06 -52.49 -0.37 1.38 16 8 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 10 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 C 0.06 1.03 4.71 -3.82 -0.02 1.01 16 15 C 0.10 1.54 2.77 -26.70 -0.07 1.46 16 16 H 0.06 1.04 7.83 -51.93 -0.41 0.64 16 17 C -0.15 -1.85 5.36 -26.63 -0.14 -2.00 16 18 C -0.12 -1.23 5.95 -26.49 -0.16 -1.39 16 19 C -0.12 -1.27 5.17 -26.66 -0.14 -1.41 16 20 C 0.09 1.09 1.16 -90.29 -0.10 0.98 16 21 C -0.16 -1.85 6.90 -26.07 -0.18 -2.03 16 22 C -0.14 -1.34 7.73 -25.85 -0.20 -1.54 16 23 C -0.12 -1.32 7.50 -26.08 -0.20 -1.51 16 24 O -0.35 -5.34 7.27 -35.23 -0.26 -5.60 16 25 H 0.09 1.81 7.84 -52.48 -0.41 1.40 16 26 H 0.08 1.37 8.06 -52.49 -0.42 0.94 16 27 H 0.09 1.76 6.47 -52.49 -0.34 1.42 16 28 H 0.08 1.69 6.43 -51.93 -0.33 1.36 16 29 H 0.09 1.68 5.44 -51.93 -0.28 1.40 16 30 H -0.01 -0.16 6.99 -51.93 -0.36 -0.52 16 31 H 0.03 0.77 7.78 -51.93 -0.40 0.37 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 33 H 0.08 1.40 7.69 -51.93 -0.40 1.00 16 34 H 0.04 0.68 5.79 -51.93 -0.30 0.38 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.66 7.61 -51.93 -0.40 0.26 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.62 7.31 -51.93 -0.38 0.24 16 41 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.06 0.70 7.56 -51.93 -0.39 0.31 16 43 H 0.08 0.64 7.61 -51.93 -0.40 0.24 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.67 8.09 -51.93 -0.42 0.24 16 46 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 350.06 15.07 5.28 5.28 Total: -1.00 -30.00 350.06 -9.98 -39.99 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -8.11 Total: 1.72 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -1.51 Total: -19.42 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: -0.36 Total: -38.96 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.26 Total: -5.60 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.00 -9.98 -39.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930542340.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.372 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds