Wall clock time and date at job start Tue Mar 31 2020 02:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99890 * 2 1 4 4 N 1.46895 * 109.46782 * 125.49164 * 3 2 1 5 5 C 1.46902 * 111.00065 * 295.92591 * 4 3 2 6 6 C 1.50695 * 109.47220 * 292.47478 * 5 4 3 7 7 H 1.08002 * 119.99916 * 4.48474 * 6 5 4 8 8 C 1.37877 * 119.99772 * 184.48273 * 6 5 4 9 9 N 1.31507 * 120.00295 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99737 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47121 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46909 * 120.00335 * 10 8 6 13 13 H 1.48495 * 109.47413 * 239.99996 * 10 8 6 14 14 C 1.46908 * 111.00292 * 59.88324 * 4 3 2 15 15 C 1.53002 * 109.46925 * 76.83319 * 14 4 3 16 16 H 1.09002 * 109.47073 * 55.49265 * 15 14 4 17 17 C 1.53052 * 109.47255 * 175.50205 * 15 14 4 18 18 C 1.53151 * 109.40442 * 179.32099 * 17 15 14 19 19 C 1.53318 * 108.97538 * 301.37801 * 18 17 15 20 20 C 1.52809 * 108.91111 * 54.89006 * 19 18 17 21 21 C 1.53424 * 113.43676 * 77.09581 * 20 19 18 22 22 C 1.53839 * 86.97520 * 89.31550 * 21 20 19 23 23 C 1.53399 * 113.48762 * 174.88140 * 20 19 18 24 24 O 1.42586 * 112.93857 * 306.05951 * 20 19 18 25 25 H 1.08009 * 119.99976 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.00151 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.99789 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47442 * 5.48883 * 3 2 1 29 29 H 1.09002 * 109.47043 * 245.48844 * 3 2 1 30 30 H 1.08998 * 109.47105 * 52.47965 * 5 4 3 31 31 H 1.09000 * 109.46911 * 172.47379 * 5 4 3 32 32 H 0.97008 * 120.00139 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.46941 * 196.83838 * 14 4 3 34 34 H 1.09000 * 109.46588 * 316.83776 * 14 4 3 35 35 H 1.09007 * 109.48107 * 299.30138 * 17 15 14 36 36 H 1.09001 * 109.47983 * 59.34154 * 17 15 14 37 37 H 1.09005 * 109.55412 * 181.53334 * 18 17 15 38 38 H 1.08995 * 109.63989 * 61.27905 * 18 17 15 39 39 H 1.08995 * 109.56806 * 295.06260 * 19 18 17 40 40 H 1.09004 * 109.56705 * 174.71523 * 19 18 17 41 41 H 1.08999 * 113.63384 * 203.83812 * 21 20 19 42 42 H 1.09001 * 113.63084 * 334.78833 * 21 20 19 43 43 H 1.09001 * 113.60549 * 270.60061 * 22 21 20 44 44 H 1.09002 * 113.60552 * 139.72628 * 22 21 20 45 45 H 1.09003 * 113.62499 * 25.25198 * 23 20 19 46 46 H 1.08994 * 113.63235 * 156.20778 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0047 1.3271 1.1276 5 6 2.2901 1.2895 2.4106 6 6 1.5256 2.5745 2.5976 7 1 1.5074 3.3118 1.8086 8 6 0.8492 2.8090 3.7760 9 7 0.8717 1.9114 4.7369 10 14 -0.0979 4.4023 4.0082 11 1 0.0339 5.2388 2.7882 12 1 -1.5315 4.0959 4.2453 13 1 0.4504 5.1386 5.1753 14 6 3.9694 0.2235 1.0298 15 6 5.0278 0.5631 -0.0216 16 1 5.4929 1.5173 0.2260 17 6 6.0947 -0.5340 -0.0445 18 6 7.1441 -0.2011 -1.1091 19 6 6.4518 -0.0836 -2.4720 20 6 5.3215 0.9393 -2.3669 21 6 5.8114 2.3932 -2.3784 22 6 5.6852 2.3380 -3.9106 23 6 4.6352 1.2320 -3.7072 24 8 4.4099 0.6534 -1.3085 25 1 -0.5400 0.9354 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3593 2.1313 0.0983 29 1 2.6144 1.4066 -0.9351 30 1 1.5955 0.4495 2.4151 31 1 3.0075 1.1720 3.2227 32 1 0.3955 2.0763 5.5659 33 1 4.4515 0.0757 1.9962 34 1 3.4491 -0.6893 0.7399 35 1 6.5745 -0.5949 0.9324 36 1 5.6278 -1.4902 -0.2808 37 1 7.8906 -0.9946 -1.1463 38 1 7.6284 0.7440 -0.8633 39 1 6.0419 -1.0523 -2.7579 40 1 7.1728 0.2448 -3.2207 41 1 5.1190 3.0913 -1.9078 42 1 6.8368 2.5116 -2.0283 43 1 6.5903 1.9937 -4.4109 44 1 5.2793 3.2500 -4.3483 45 1 4.7148 0.4165 -4.4260 46 1 3.6178 1.6092 -3.6039 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930542340.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:57 Heat of formation + Delta-G solvation = -24.522554 kcal Electronic energy + Delta-G solvation = -23307.443593 eV Core-core repulsion = 20197.283490 eV Total energy + Delta-G solvation = -3110.160103 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.43287 -39.13486 -37.14803 -34.83741 -34.53656 -33.71579 -31.38405 -29.02812 -27.53981 -26.66250 -25.90750 -24.75171 -23.51091 -22.41539 -21.63690 -20.23099 -19.38409 -18.35014 -17.64190 -16.97678 -16.82781 -16.31913 -16.19007 -15.91500 -15.33749 -15.04477 -14.82729 -14.51426 -14.17112 -14.02910 -13.81218 -13.45960 -13.21218 -13.11083 -12.95419 -12.71546 -12.59250 -12.34005 -12.22548 -12.13427 -12.00411 -11.92853 -11.85823 -11.81333 -11.52760 -11.49643 -11.04449 -10.71168 -10.58790 -10.19561 -9.98146 -8.88621 -8.17201 -6.25439 1.39699 1.40268 1.47890 1.53796 2.41478 2.83278 3.15102 3.36757 3.65656 3.73292 3.86631 3.92123 3.99700 4.09512 4.14722 4.19244 4.31309 4.38454 4.44323 4.50567 4.66452 4.73440 4.80158 4.81703 4.87886 4.92779 4.99258 5.04120 5.06686 5.07956 5.10273 5.16035 5.18676 5.23469 5.25661 5.36865 5.42715 5.51037 5.57751 5.68333 5.76159 5.93326 6.11238 6.44921 6.57631 6.71388 6.90499 7.43133 8.94005 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.004613 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.907537 B = 6068.086080 C = 6198.658590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.179 4.179 3 C 0.094 3.906 4 N -0.533 5.533 5 C 0.208 3.792 6 C -0.513 4.513 7 H 0.056 0.944 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.964 3.036 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.278 1.278 14 C 0.056 3.944 15 C 0.111 3.889 16 H 0.049 0.951 17 C -0.146 4.146 18 C -0.115 4.115 19 C -0.119 4.119 20 C 0.077 3.923 21 C -0.165 4.165 22 C -0.125 4.125 23 C -0.123 4.123 24 O -0.371 6.371 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.051 0.949 29 H 0.101 0.899 30 H -0.031 1.031 31 H 0.000 1.000 32 H 0.263 0.737 33 H 0.070 0.930 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.162 -4.305 -17.143 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.198 4.198 3 C -0.034 4.034 4 N -0.255 5.255 5 C 0.082 3.918 6 C -0.552 4.552 7 H 0.074 0.926 8 C -0.194 4.194 9 N -0.575 5.575 10 Si 0.789 3.211 11 H -0.190 1.190 12 H -0.205 1.205 13 H -0.204 1.204 14 C -0.073 4.073 15 C 0.053 3.947 16 H 0.067 0.933 17 C -0.184 4.184 18 C -0.153 4.153 19 C -0.156 4.156 20 C 0.038 3.962 21 C -0.202 4.202 22 C -0.163 4.163 23 C -0.160 4.160 24 O -0.291 6.291 25 H 0.106 0.894 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.069 0.931 29 H 0.119 0.881 30 H -0.013 1.013 31 H 0.018 0.982 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.094 0.906 45 H 0.103 0.897 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.186 -3.899 -17.009 21.284 hybrid contribution -1.070 -0.084 1.028 1.486 sum 11.116 -3.983 -15.981 19.870 Atomic orbital electron populations 1.23827 0.96016 1.01644 1.01310 1.23568 0.96759 0.99912 0.99573 1.21321 0.93854 0.93363 0.94820 1.62272 1.17242 1.42951 1.03000 1.19385 0.91365 0.95043 0.86016 1.21428 1.29696 1.03410 1.00640 0.92550 1.25823 0.97746 1.00303 0.95547 1.70087 1.44348 1.36559 1.06512 0.85420 0.78110 0.79375 0.78237 1.19000 1.20459 1.20357 1.22224 0.94153 0.93044 0.97836 1.21919 0.92386 0.97536 0.82890 0.93318 1.22127 0.96843 0.98694 1.00757 1.21569 0.97344 1.02554 0.93792 1.21821 0.96693 0.98769 0.98314 1.22983 0.91230 0.93797 0.88199 1.23462 1.01533 0.97272 0.97975 1.22706 0.99518 0.98993 0.95041 1.22996 0.99101 0.99455 0.94494 1.87968 1.34012 1.91874 1.15250 0.89404 0.87652 0.87886 0.93058 0.88112 1.01311 0.98224 0.92850 0.91119 0.94427 0.90439 0.91373 0.89650 0.91697 0.91043 0.88814 0.91598 0.90874 0.88063 0.90645 0.89695 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.09 14.32 67.78 0.97 -6.11 16 2 C -0.18 -6.99 7.63 25.64 0.20 -6.80 16 3 C 0.09 3.93 5.37 85.56 0.46 4.39 16 4 N -0.53 -24.15 4.61 -905.36 -4.18 -28.33 16 5 C 0.21 11.43 4.56 85.56 0.39 11.82 16 6 C -0.51 -29.98 8.56 25.60 0.22 -29.76 16 7 H 0.06 3.28 7.06 -2.91 -0.02 3.26 16 8 C 0.00 0.20 5.46 84.66 0.46 0.66 16 9 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 10 Si 0.96 45.53 29.54 68.60 2.03 47.56 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 14 C 0.06 2.09 4.71 86.30 0.41 2.50 16 15 C 0.11 3.38 2.77 30.61 0.08 3.47 16 16 H 0.05 1.62 7.83 -2.39 -0.02 1.61 16 17 C -0.15 -3.40 5.36 30.66 0.16 -3.23 16 18 C -0.12 -2.08 5.95 30.75 0.18 -1.90 16 19 C -0.12 -2.09 5.17 30.64 0.16 -1.93 16 20 C 0.08 1.76 1.16 -10.58 -0.01 1.75 16 21 C -0.16 -3.63 6.90 31.02 0.21 -3.42 16 22 C -0.13 -2.09 7.73 31.16 0.24 -1.85 16 23 C -0.12 -2.47 7.50 31.01 0.23 -2.24 16 24 O -0.37 -11.25 7.27 -148.98 -1.08 -12.33 16 25 H 0.09 3.38 7.84 -2.91 -0.02 3.36 16 26 H 0.11 3.40 8.06 -2.91 -0.02 3.37 16 27 H 0.10 3.84 6.47 -2.91 -0.02 3.82 16 28 H 0.05 2.38 6.43 -2.39 -0.02 2.36 16 29 H 0.10 3.95 5.44 -2.39 -0.01 3.94 16 30 H -0.03 -1.82 6.99 -2.39 -0.02 -1.83 16 31 H 0.00 -0.02 7.78 -2.39 -0.02 -0.04 16 32 H 0.26 15.13 8.31 -92.70 -0.77 14.35 16 33 H 0.07 2.69 7.69 -2.39 -0.02 2.67 16 34 H 0.04 1.40 5.79 -2.39 -0.01 1.39 16 35 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.06 1.18 7.61 -2.39 -0.02 1.16 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.09 1.25 7.31 -2.38 -0.02 1.23 16 41 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 42 H 0.07 1.46 7.56 -2.39 -0.02 1.45 16 43 H 0.10 1.25 7.61 -2.39 -0.02 1.24 16 44 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 46 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -65.62 350.06 2.34 -63.27 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.92 Total: 19.49 kcal Atomic # 6 Polarization: -37.01 SS G_CDS: 4.37 Total: -32.64 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -3.89 Total: -85.35 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -1.08 Total: -12.33 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -65.62 2.34 -63.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930542340.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.752 kcal (2) G-P(sol) polarization free energy of solvation -65.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds