Wall clock time and date at job start Tue Mar 31 2020 02:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47416 * 2 1 4 4 C 1.53000 * 109.46972 * 120.00146 * 2 1 3 5 5 N 1.46499 * 109.47268 * 64.99489 * 4 2 1 6 6 C 1.46500 * 120.00123 * 270.00262 * 5 4 2 7 7 C 1.50700 * 109.47101 * 269.99899 * 6 5 4 8 8 H 1.08002 * 120.00255 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00213 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00595 * 179.97438 * 9 7 6 11 11 Si 1.86807 * 119.99649 * 359.97438 * 9 7 6 12 12 H 1.48492 * 109.47305 * 90.00427 * 11 9 7 13 13 H 1.48503 * 109.46768 * 210.00031 * 11 9 7 14 14 H 1.48504 * 109.47133 * 329.99882 * 11 9 7 15 15 C 1.34779 * 119.99712 * 90.00422 * 5 4 2 16 16 O 1.21282 * 119.99927 * 180.02562 * 15 5 4 17 17 C 1.50699 * 120.00033 * 359.97438 * 15 5 4 18 18 C 1.53006 * 109.46866 * 180.02562 * 17 15 5 19 19 H 1.09001 * 109.63891 * 305.42022 * 18 17 15 20 20 C 1.53022 * 109.64220 * 66.05500 * 18 17 15 21 21 C 1.50070 * 110.14517 * 169.11607 * 20 18 17 22 22 C 1.29438 * 124.07551 * 342.87524 * 21 20 18 23 23 C 1.50063 * 124.07778 * 0.46183 * 22 21 20 24 24 C 1.53019 * 110.14783 * 342.87242 * 23 22 21 25 25 H 1.08999 * 109.46985 * 300.00097 * 1 2 3 26 26 H 1.08998 * 109.46922 * 60.00019 * 1 2 3 27 27 H 1.08998 * 109.47497 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47098 * 239.99636 * 2 1 3 29 29 H 1.09004 * 109.47041 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47059 * 299.99897 * 3 2 1 31 31 H 1.08999 * 109.47122 * 59.99987 * 3 2 1 32 32 H 1.09001 * 109.47335 * 304.99944 * 4 2 1 33 33 H 1.09003 * 109.47589 * 184.99771 * 4 2 1 34 34 H 1.08993 * 109.47349 * 29.99900 * 6 5 4 35 35 H 1.09005 * 109.47039 * 150.00075 * 6 5 4 36 36 H 0.97002 * 120.00302 * 179.97438 * 10 9 7 37 37 H 1.08993 * 109.47512 * 60.00410 * 17 15 5 38 38 H 1.09000 * 109.47247 * 300.00119 * 17 15 5 39 39 H 1.09001 * 109.36036 * 289.32941 * 20 18 17 40 40 H 1.08999 * 109.35736 * 48.91556 * 20 18 17 41 41 H 1.08004 * 117.95898 * 162.88848 * 21 20 18 42 42 H 1.08005 * 117.96171 * 180.44253 * 22 21 20 43 43 H 1.09000 * 109.35994 * 222.66246 * 23 22 21 44 44 H 1.08995 * 109.24977 * 103.01016 * 23 22 21 45 45 H 1.09006 * 109.64333 * 289.75056 * 24 23 22 46 46 H 1.08998 * 109.81962 * 169.22291 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6523 -2.1328 1.1906 6 6 0.3743 -2.5658 1.7613 7 6 0.5714 -2.9407 3.2076 8 1 1.5506 -2.8645 3.6566 9 6 -0.4983 -3.3820 3.9572 10 7 -0.3264 -3.7097 5.2192 11 14 -2.1920 -3.5145 3.1803 12 1 -2.3633 -4.8682 2.5944 13 1 -3.2311 -3.2888 4.2170 14 1 -2.3280 -2.4918 2.1121 15 6 2.4713 -3.0331 0.6117 16 8 2.1502 -4.2016 0.5627 17 6 3.7856 -2.5876 0.0242 18 6 4.5160 -3.7956 -0.5660 19 1 4.6152 -4.5708 0.1937 20 6 3.7299 -4.3384 -1.7614 21 6 4.5549 -5.3450 -2.5085 22 6 5.8377 -5.4661 -2.3855 23 6 6.6780 -4.6235 -1.4713 24 6 5.9069 -3.3698 -1.0530 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6053 -0.2618 2.1370 33 1 3.1263 -0.6445 1.2952 34 1 -0.3486 -1.7531 1.6919 35 1 0.0040 -3.4297 1.2092 36 1 -1.0790 -4.0198 5.7467 37 1 4.3988 -2.1377 0.8049 38 1 3.6026 -1.8546 -0.7616 39 1 2.8148 -4.8127 -1.4068 40 1 3.4728 -3.5155 -2.4285 41 1 4.0466 -6.0097 -3.1914 42 1 6.3342 -6.2208 -2.9774 43 1 7.5916 -4.3300 -1.9884 44 1 6.9351 -5.2023 -0.5842 45 1 5.8069 -2.6992 -1.9066 46 1 6.4372 -2.8612 -0.2478 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930902779.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:22 Heat of formation + Delta-G solvation = -48.665823 kcal Electronic energy + Delta-G solvation = -22913.634774 eV Core-core repulsion = 19802.427740 eV Total energy + Delta-G solvation = -3111.207034 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.70230 -38.12014 -36.35814 -33.62676 -32.62232 -32.18841 -30.65184 -28.87352 -26.95338 -26.76407 -25.39902 -23.20176 -22.37893 -20.83113 -20.23916 -18.28225 -17.78475 -16.92569 -16.29614 -15.95557 -15.50931 -14.86046 -14.47373 -14.32956 -13.93271 -13.77583 -13.52227 -13.08244 -12.82901 -12.60180 -12.43908 -12.28511 -12.16206 -12.08061 -11.89990 -11.75358 -11.46523 -11.43016 -11.08196 -10.96786 -10.63253 -10.58092 -10.46857 -10.37708 -10.29293 -10.09572 -9.98396 -9.48826 -8.94475 -8.77294 -8.56001 -7.62465 -6.06386 -4.04273 2.39175 3.29828 3.35713 3.37695 3.42869 3.87206 4.41251 4.75778 4.78144 4.89575 5.01389 5.08948 5.15788 5.26154 5.31911 5.33281 5.40991 5.43791 5.61685 5.65226 5.71786 5.77094 5.79184 5.83603 5.88036 5.90251 5.96813 6.02643 6.04350 6.10860 6.13901 6.22669 6.25117 6.45475 6.49069 6.54411 6.61083 6.75699 6.79975 6.98949 7.07288 7.42215 7.65552 8.33325 8.50674 8.96750 9.07274 9.54582 11.07217 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015192 B = 0.005363 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.574868 B = 5220.169068 C = 6286.008895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.116 3.884 5 N -0.592 5.592 6 C 0.213 3.787 7 C -0.526 4.526 8 H 0.073 0.927 9 C 0.072 3.928 10 N -0.899 5.899 11 Si 0.874 3.126 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.507 3.493 16 O -0.539 6.539 17 C -0.136 4.136 18 C -0.070 4.070 19 H 0.081 0.919 20 C -0.092 4.092 21 C -0.141 4.141 22 C -0.171 4.171 23 C -0.087 4.087 24 C -0.115 4.115 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.035 0.965 35 H 0.033 0.967 36 H 0.264 0.736 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.962 6.887 -14.780 19.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.009 4.009 5 N -0.322 5.322 6 C 0.092 3.908 7 C -0.564 4.564 8 H 0.091 0.909 9 C -0.130 4.130 10 N -0.538 5.538 11 Si 0.701 3.299 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.294 3.706 16 O -0.417 6.417 17 C -0.176 4.176 18 C -0.089 4.089 19 H 0.099 0.901 20 C -0.129 4.129 21 C -0.159 4.159 22 C -0.189 4.189 23 C -0.124 4.124 24 C -0.153 4.153 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.083 0.917 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.667 6.193 -14.626 18.594 hybrid contribution -0.943 -0.124 -0.207 0.973 sum 8.724 6.069 -14.833 18.247 Atomic orbital electron populations 1.21941 0.95000 1.02668 1.01117 1.21591 0.96804 0.95973 0.99014 1.21776 1.00682 0.95883 1.01791 1.21554 0.99416 0.82044 0.97852 1.47897 1.21159 1.06602 1.56586 1.19736 0.80867 0.95622 0.94550 1.21357 0.97341 1.44282 0.93460 0.90866 1.24848 0.98802 0.94660 0.94693 1.69897 1.31562 1.44938 1.07367 0.86884 0.84427 0.79295 0.79295 1.19968 1.21124 1.19038 1.20397 0.85626 0.85986 0.78566 1.90631 1.75163 1.17436 1.58422 1.21802 0.95383 0.99285 1.01094 1.20943 0.93501 0.96881 0.97586 0.90062 1.20634 0.99459 0.97419 0.95406 1.22140 0.95238 0.99063 0.99466 1.21969 0.95457 1.00765 1.00733 1.20396 0.97636 0.95868 0.98544 1.21674 0.95732 0.97128 1.00740 0.92478 0.93470 0.91712 0.91481 0.92778 0.92857 0.92443 0.89882 0.91339 0.94745 0.94862 0.92637 0.89435 0.89709 0.88814 0.91681 0.88413 0.88533 0.91523 0.91059 0.91971 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.18 37.16 0.30 -1.80 16 2 C -0.11 -1.46 3.12 -90.62 -0.28 -1.74 16 3 C -0.14 -1.45 9.19 37.16 0.34 -1.10 16 4 C 0.12 1.79 4.70 -4.04 -0.02 1.77 16 5 N -0.59 -11.83 2.28 -175.06 -0.40 -12.23 16 6 C 0.21 5.13 3.30 -5.19 -0.02 5.12 16 7 C -0.53 -15.10 9.94 -34.44 -0.34 -15.44 16 8 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 9 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 10 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 11 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 12 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 15 C 0.51 10.02 7.43 -10.99 -0.08 9.94 16 16 O -0.54 -12.85 13.67 5.56 0.08 -12.77 16 17 C -0.14 -1.93 3.73 -27.88 -0.10 -2.04 16 18 C -0.07 -0.98 1.87 -90.40 -0.17 -1.15 16 19 H 0.08 1.34 7.93 -51.93 -0.41 0.93 16 20 C -0.09 -1.31 5.05 -28.18 -0.14 -1.45 16 21 C -0.14 -1.79 9.80 -35.90 -0.35 -2.15 16 22 C -0.17 -1.97 9.80 -35.90 -0.35 -2.32 16 23 C -0.09 -0.92 6.12 -28.18 -0.17 -1.09 16 24 C -0.12 -1.26 5.31 -26.52 -0.14 -1.40 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 1.07 5.89 -51.93 -0.31 0.76 16 28 H 0.07 0.84 7.30 -51.92 -0.38 0.46 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 33 H 0.07 0.90 6.44 -51.93 -0.33 0.57 16 34 H 0.03 0.79 5.04 -51.93 -0.26 0.53 16 35 H 0.03 0.87 6.85 -51.93 -0.36 0.51 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.09 1.14 7.40 -51.93 -0.38 0.75 16 38 H 0.08 1.02 7.21 -51.93 -0.37 0.65 16 39 H 0.09 1.61 6.30 -51.93 -0.33 1.29 16 40 H 0.06 0.84 8.06 -51.93 -0.42 0.43 16 41 H 0.10 1.14 8.06 -52.48 -0.42 0.72 16 42 H 0.10 0.97 8.06 -52.48 -0.42 0.55 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 353.39 15.07 5.33 5.33 Total: -1.00 -32.67 353.39 -8.73 -41.40 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -8.21 Total: 1.24 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -1.63 Total: -12.86 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.37 Total: -39.34 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.77 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.67 -8.73 -41.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930902779.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.263 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds