Wall clock time and date at job start Tue Mar 31 2020 02:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47416 * 2 1 4 4 C 1.53000 * 109.46972 * 120.00146 * 2 1 3 5 5 N 1.46499 * 109.47268 * 64.99489 * 4 2 1 6 6 C 1.46500 * 120.00123 * 270.00262 * 5 4 2 7 7 C 1.50700 * 109.47101 * 269.99899 * 6 5 4 8 8 H 1.08002 * 120.00255 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00213 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00595 * 179.97438 * 9 7 6 11 11 Si 1.86807 * 119.99649 * 359.97438 * 9 7 6 12 12 H 1.48492 * 109.47305 * 90.00427 * 11 9 7 13 13 H 1.48503 * 109.46768 * 210.00031 * 11 9 7 14 14 H 1.48504 * 109.47133 * 329.99882 * 11 9 7 15 15 C 1.34779 * 119.99712 * 90.00422 * 5 4 2 16 16 O 1.21282 * 119.99927 * 180.02562 * 15 5 4 17 17 C 1.50699 * 120.00033 * 359.97438 * 15 5 4 18 18 C 1.53006 * 109.46866 * 180.02562 * 17 15 5 19 19 H 1.09001 * 109.63891 * 305.42022 * 18 17 15 20 20 C 1.53022 * 109.64220 * 66.05500 * 18 17 15 21 21 C 1.50070 * 110.14517 * 169.11607 * 20 18 17 22 22 C 1.29438 * 124.07551 * 342.87524 * 21 20 18 23 23 C 1.50063 * 124.07778 * 0.46183 * 22 21 20 24 24 C 1.53019 * 110.14783 * 342.87242 * 23 22 21 25 25 H 1.08999 * 109.46985 * 300.00097 * 1 2 3 26 26 H 1.08998 * 109.46922 * 60.00019 * 1 2 3 27 27 H 1.08998 * 109.47497 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47098 * 239.99636 * 2 1 3 29 29 H 1.09004 * 109.47041 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47059 * 299.99897 * 3 2 1 31 31 H 1.08999 * 109.47122 * 59.99987 * 3 2 1 32 32 H 1.09001 * 109.47335 * 304.99944 * 4 2 1 33 33 H 1.09003 * 109.47589 * 184.99771 * 4 2 1 34 34 H 1.08993 * 109.47349 * 29.99900 * 6 5 4 35 35 H 1.09005 * 109.47039 * 150.00075 * 6 5 4 36 36 H 0.97002 * 120.00302 * 179.97438 * 10 9 7 37 37 H 1.08993 * 109.47512 * 60.00410 * 17 15 5 38 38 H 1.09000 * 109.47247 * 300.00119 * 17 15 5 39 39 H 1.09001 * 109.36036 * 289.32941 * 20 18 17 40 40 H 1.08999 * 109.35736 * 48.91556 * 20 18 17 41 41 H 1.08004 * 117.95898 * 162.88848 * 21 20 18 42 42 H 1.08005 * 117.96171 * 180.44253 * 22 21 20 43 43 H 1.09000 * 109.35994 * 222.66246 * 23 22 21 44 44 H 1.08995 * 109.24977 * 103.01016 * 23 22 21 45 45 H 1.09006 * 109.64333 * 289.75056 * 24 23 22 46 46 H 1.08998 * 109.81962 * 169.22291 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6523 -2.1328 1.1906 6 6 0.3743 -2.5658 1.7613 7 6 0.5714 -2.9407 3.2076 8 1 1.5506 -2.8645 3.6566 9 6 -0.4983 -3.3820 3.9572 10 7 -0.3264 -3.7097 5.2192 11 14 -2.1920 -3.5145 3.1803 12 1 -2.3633 -4.8682 2.5944 13 1 -3.2311 -3.2888 4.2170 14 1 -2.3280 -2.4918 2.1121 15 6 2.4713 -3.0331 0.6117 16 8 2.1502 -4.2016 0.5627 17 6 3.7856 -2.5876 0.0242 18 6 4.5160 -3.7956 -0.5660 19 1 4.6152 -4.5708 0.1937 20 6 3.7299 -4.3384 -1.7614 21 6 4.5549 -5.3450 -2.5085 22 6 5.8377 -5.4661 -2.3855 23 6 6.6780 -4.6235 -1.4713 24 6 5.9069 -3.3698 -1.0530 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6053 -0.2618 2.1370 33 1 3.1263 -0.6445 1.2952 34 1 -0.3486 -1.7531 1.6919 35 1 0.0040 -3.4297 1.2092 36 1 -1.0790 -4.0198 5.7467 37 1 4.3988 -2.1377 0.8049 38 1 3.6026 -1.8546 -0.7616 39 1 2.8148 -4.8127 -1.4068 40 1 3.4728 -3.5155 -2.4285 41 1 4.0466 -6.0097 -3.1914 42 1 6.3342 -6.2208 -2.9774 43 1 7.5916 -4.3300 -1.9884 44 1 6.9351 -5.2023 -0.5842 45 1 5.8069 -2.6992 -1.9066 46 1 6.4372 -2.8612 -0.2478 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930902779.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:21 Heat of formation + Delta-G solvation = -67.341429 kcal Electronic energy + Delta-G solvation = -22914.444609 eV Core-core repulsion = 19802.427740 eV Total energy + Delta-G solvation = -3112.016869 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.12261 -39.23310 -37.71118 -35.35571 -34.16321 -33.68450 -31.57528 -30.64612 -28.10954 -27.91900 -26.79603 -24.50953 -23.82730 -22.07384 -21.32289 -19.74374 -19.13217 -18.77812 -17.72852 -17.29509 -16.72829 -16.41896 -15.96905 -15.62271 -15.09427 -15.02701 -14.80308 -14.44890 -14.21690 -13.88945 -13.73000 -13.64598 -13.42829 -13.17127 -13.09823 -12.96343 -12.88270 -12.66750 -12.51753 -12.39192 -12.11027 -11.96259 -11.77623 -11.62746 -11.55261 -11.47358 -11.39502 -10.97391 -10.82812 -10.43881 -9.81102 -9.29409 -8.35037 -6.38755 1.29004 1.33142 1.41320 1.45505 1.89521 2.28717 2.38051 2.99582 3.66532 3.77410 3.86508 3.95654 4.06112 4.12325 4.24956 4.32450 4.43200 4.50784 4.58670 4.64293 4.70080 4.75755 4.76979 4.78883 4.85252 4.91039 4.91224 4.98442 5.03517 5.07727 5.10350 5.12209 5.14749 5.27278 5.30347 5.43780 5.45590 5.46570 5.54452 5.54949 5.73421 5.83047 6.12165 6.25638 6.62444 6.79507 7.22310 7.52266 8.82169 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015192 B = 0.005363 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.574868 B = 5220.169068 C = 6286.008895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.137 4.137 4 C 0.109 3.891 5 N -0.598 5.598 6 C 0.226 3.774 7 C -0.533 4.533 8 H 0.027 0.973 9 C 0.012 3.988 10 N -0.946 5.946 11 Si 0.943 3.057 12 H -0.278 1.278 13 H -0.273 1.273 14 H -0.239 1.239 15 C 0.495 3.505 16 O -0.591 6.591 17 C -0.122 4.122 18 C -0.070 4.070 19 H 0.045 0.955 20 C -0.089 4.089 21 C -0.166 4.166 22 C -0.161 4.161 23 C -0.092 4.092 24 C -0.107 4.107 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.033 0.967 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.011 0.989 36 H 0.268 0.732 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.052 0.948 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.093 0.907 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.130 9.182 -17.276 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.125 4.125 3 C -0.195 4.195 4 C -0.013 4.013 5 N -0.328 5.328 6 C 0.104 3.896 7 C -0.572 4.572 8 H 0.046 0.954 9 C -0.186 4.186 10 N -0.586 5.586 11 Si 0.766 3.234 12 H -0.204 1.204 13 H -0.198 1.198 14 H -0.162 1.162 15 C 0.284 3.716 16 O -0.472 6.472 17 C -0.161 4.161 18 C -0.089 4.089 19 H 0.063 0.937 20 C -0.126 4.126 21 C -0.184 4.184 22 C -0.179 4.179 23 C -0.129 4.129 24 C -0.145 4.145 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.029 0.971 36 H 0.077 0.923 37 H 0.125 0.875 38 H 0.136 0.864 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.132 0.868 43 H 0.112 0.888 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.863 8.541 -17.137 22.014 hybrid contribution -1.218 -0.879 0.628 1.628 sum 9.645 7.661 -16.509 20.598 Atomic orbital electron populations 1.21953 0.96146 1.00871 1.02017 1.21528 0.95818 0.97644 0.97521 1.21734 1.01833 0.93477 1.02446 1.21872 1.01184 0.79410 0.98879 1.48000 1.19916 1.08824 1.56091 1.19339 0.83611 0.95286 0.91398 1.21615 0.95456 1.44245 0.95844 0.95417 1.25808 1.03551 0.94132 0.95105 1.70047 1.33180 1.46295 1.09117 0.85790 0.78798 0.79663 0.79194 1.20368 1.19838 1.16199 1.21479 0.87061 0.85225 0.77802 1.90611 1.76484 1.19770 1.60341 1.21825 0.91996 1.00106 1.02220 1.20916 0.95673 0.95810 0.96512 0.93675 1.20516 0.98147 0.98054 0.95854 1.22149 0.95883 0.99791 1.00610 1.22260 0.95111 1.00514 1.00028 1.20504 0.98403 0.95551 0.98455 1.21649 0.93337 0.97682 1.01809 0.93017 0.91187 0.94740 0.90600 0.90946 0.91351 0.92686 0.91525 0.88520 0.93042 0.97119 0.92341 0.87471 0.86350 0.92921 0.90388 0.88092 0.86825 0.88843 0.91403 0.90223 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 8.18 71.98 0.59 -3.41 16 2 C -0.11 -2.41 3.12 -10.80 -0.03 -2.44 16 3 C -0.14 -2.22 9.19 71.98 0.66 -1.55 16 4 C 0.11 3.22 4.70 86.38 0.41 3.63 16 5 N -0.60 -24.18 2.28 -826.15 -1.88 -26.07 16 6 C 0.23 11.19 3.30 85.63 0.28 11.48 16 7 C -0.53 -31.98 9.94 25.60 0.25 -31.73 16 8 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 9 C 0.01 0.71 5.47 84.65 0.46 1.17 16 10 N -0.95 -60.87 13.96 21.45 0.30 -60.57 16 11 Si 0.94 45.53 27.47 68.60 1.88 47.42 16 12 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 13 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 14 H -0.24 -10.39 6.54 99.48 0.65 -9.74 16 15 C 0.49 19.89 7.43 87.66 0.65 20.54 16 16 O -0.59 -29.76 13.67 -3.04 -0.04 -29.80 16 17 C -0.12 -3.27 3.73 29.85 0.11 -3.16 16 18 C -0.07 -1.90 1.87 -10.65 -0.02 -1.92 16 19 H 0.04 1.54 7.93 -2.39 -0.02 1.52 16 20 C -0.09 -2.52 5.05 29.66 0.15 -2.37 16 21 C -0.17 -4.14 9.80 27.04 0.27 -3.87 16 22 C -0.16 -3.40 9.80 27.04 0.27 -3.13 16 23 C -0.09 -1.68 6.12 29.65 0.18 -1.50 16 24 C -0.11 -2.01 5.31 30.73 0.16 -1.84 16 25 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.03 1.10 5.89 -2.39 -0.01 1.08 16 28 H 0.08 1.63 7.30 -2.38 -0.02 1.61 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 33 H 0.10 2.28 6.44 -2.39 -0.02 2.27 16 34 H 0.05 2.37 5.04 -2.39 -0.01 2.36 16 35 H 0.01 0.58 6.85 -2.38 -0.02 0.56 16 36 H 0.27 16.01 8.31 -92.71 -0.77 15.23 16 37 H 0.11 2.48 7.40 -2.39 -0.02 2.46 16 38 H 0.12 2.41 7.21 -2.39 -0.02 2.39 16 39 H 0.05 1.93 6.30 -2.39 -0.02 1.91 16 40 H 0.08 1.93 8.06 -2.39 -0.02 1.91 16 41 H 0.10 2.36 8.06 -2.91 -0.02 2.34 16 42 H 0.11 1.99 8.06 -2.91 -0.02 1.97 16 43 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 44 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.08 1.26 8.12 -2.38 -0.02 1.24 16 46 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -76.89 353.39 5.51 -71.38 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.87 Total: 17.75 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 4.39 Total: -20.11 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -1.59 Total: -86.63 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.04 Total: -29.80 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.88 Total: 47.42 kcal Total: -76.89 5.51 -71.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930902779.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.035 kcal (2) G-P(sol) polarization free energy of solvation -76.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds