Wall clock time and date at job start Tue Mar 31 2020 02:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46929 * 2 1 4 4 C 1.52996 * 109.46534 * 119.99703 * 2 1 3 5 5 N 1.46506 * 109.46745 * 174.15347 * 4 2 1 6 6 C 1.46497 * 119.99945 * 276.69815 * 5 4 2 7 7 C 1.50701 * 109.47073 * 269.99788 * 6 5 4 8 8 H 1.07994 * 120.00133 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00035 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00057 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00187 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46910 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46826 * 120.00060 * 11 9 7 14 14 H 1.48494 * 109.47538 * 240.00390 * 11 9 7 15 15 C 1.34779 * 119.99654 * 96.69661 * 5 4 2 16 16 O 1.21287 * 119.99654 * 185.35747 * 15 5 4 17 17 C 1.50703 * 120.00298 * 5.36332 * 15 5 4 18 18 C 1.53001 * 109.46991 * 174.33736 * 17 15 5 19 19 H 1.09003 * 109.63863 * 55.41902 * 18 17 15 20 20 C 1.53026 * 109.64189 * 294.99695 * 18 17 15 21 21 C 1.50065 * 110.03210 * 190.95374 * 20 18 17 22 22 C 1.29170 * 124.28739 * 17.04035 * 21 20 18 23 23 C 1.50071 * 123.99357 * 359.61930 * 22 21 20 24 24 C 1.53022 * 110.14245 * 17.08708 * 23 22 21 25 25 H 1.08996 * 109.47445 * 300.00513 * 1 2 3 26 26 H 1.09010 * 109.46706 * 60.00480 * 1 2 3 27 27 H 1.08995 * 109.47558 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46993 * 239.99694 * 2 1 3 29 29 H 1.09002 * 109.46538 * 184.69283 * 3 2 1 30 30 H 1.09002 * 109.46846 * 304.69173 * 3 2 1 31 31 H 1.09001 * 109.47484 * 64.69304 * 3 2 1 32 32 H 1.09000 * 109.47458 * 54.15556 * 4 2 1 33 33 H 1.09000 * 109.47079 * 294.14967 * 4 2 1 34 34 H 1.08996 * 109.47351 * 30.00324 * 6 5 4 35 35 H 1.09000 * 109.46917 * 150.00553 * 6 5 4 36 36 H 0.96994 * 120.00620 * 179.97438 * 10 9 7 37 37 H 1.09000 * 109.47150 * 54.33442 * 17 15 5 38 38 H 1.09002 * 109.46866 * 294.33741 * 17 15 5 39 39 H 1.09003 * 109.35718 * 311.08848 * 20 18 17 40 40 H 1.08993 * 109.35691 * 70.81179 * 20 18 17 41 41 H 1.08003 * 117.95985 * 197.04145 * 21 20 18 42 42 H 1.07998 * 118.04383 * 179.54783 * 22 21 20 43 43 H 1.08991 * 109.35362 * 256.88079 * 23 22 21 44 44 H 1.08992 * 109.35768 * 137.29191 * 23 22 21 45 45 H 1.09005 * 109.63721 * 190.87893 * 24 23 22 46 46 H 1.08994 * 109.81853 * 70.35554 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4982 -0.8443 1.1811 6 6 4.1060 -1.9432 0.4267 7 6 4.3008 -3.1292 1.3359 8 1 4.0014 -3.0704 2.3718 9 6 4.8603 -4.2897 0.8448 10 7 5.2245 -4.3615 -0.4169 11 14 5.1025 -5.7596 1.9719 12 1 4.6148 -5.4245 3.3339 13 1 4.3388 -6.9189 1.4444 14 1 6.5456 -6.1040 2.0333 15 6 4.2804 0.0536 1.8123 16 8 5.4849 0.0097 1.6767 17 6 3.6586 1.1118 2.6867 18 6 4.7617 1.9050 3.3902 19 1 5.4492 2.3128 2.6491 20 6 5.5238 0.9873 4.3487 21 6 6.4226 1.8005 5.2334 22 6 6.3097 3.0750 5.4109 23 6 5.2654 3.9251 4.7485 24 6 4.1377 3.0457 4.2040 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1268 1.4436 -0.0841 30 1 1.6096 1.9800 -0.8450 31 1 1.7469 1.9316 0.9290 32 1 1.5936 -1.7142 1.3032 33 1 1.7645 -0.1504 2.1361 34 1 3.4520 -2.2222 -0.3994 35 1 5.0714 -1.6240 0.0341 36 1 5.6185 -5.1778 -0.7623 37 1 3.0199 0.6380 3.4321 38 1 3.0616 1.7859 2.0724 39 1 4.8122 0.4371 4.9645 40 1 6.1242 0.2826 3.7734 41 1 7.2164 1.2882 5.7568 42 1 7.0085 3.5587 6.0773 43 1 5.7190 4.4804 3.9276 44 1 4.8571 4.6274 5.4751 45 1 3.4869 3.6400 3.5625 46 1 3.5594 2.6326 5.0304 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930902780.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:26 Heat of formation + Delta-G solvation = -52.114766 kcal Electronic energy + Delta-G solvation = -22957.773023 eV Core-core repulsion = 19846.416431 eV Total energy + Delta-G solvation = -3111.356591 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.65586 -38.03756 -36.20883 -33.70434 -32.51660 -32.18396 -30.60612 -28.28409 -27.09214 -26.50395 -25.29290 -23.24788 -22.63892 -20.83767 -20.16803 -18.08367 -17.79448 -16.42234 -16.39141 -15.85486 -15.28374 -14.92525 -14.49642 -14.26643 -13.99969 -13.67445 -13.52859 -12.94135 -12.83072 -12.56200 -12.31848 -12.30730 -12.08583 -11.92286 -11.85743 -11.66636 -11.34768 -11.16743 -10.88868 -10.82720 -10.71432 -10.56336 -10.48657 -10.40392 -10.25126 -10.08800 -9.90233 -9.56049 -8.87198 -8.68561 -8.41766 -7.55629 -6.02292 -4.06887 2.45746 3.30140 3.37641 3.40980 3.52510 4.00838 4.46103 4.80521 4.84398 4.94482 5.08334 5.16136 5.21556 5.31746 5.35133 5.38133 5.48205 5.49989 5.63567 5.69493 5.72756 5.77328 5.82601 5.87167 5.92236 5.94255 5.97871 6.03811 6.10411 6.12841 6.22162 6.29649 6.31818 6.48669 6.54479 6.60090 6.65439 6.81473 7.13755 7.14461 7.50789 7.62222 7.95239 8.27160 8.51904 8.94035 9.19197 9.58544 11.05641 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.005902 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.354082 B = 4742.759845 C = 6432.998569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.147 4.147 4 C 0.116 3.884 5 N -0.598 5.598 6 C 0.246 3.754 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.508 3.492 16 O -0.543 6.543 17 C -0.146 4.146 18 C -0.069 4.069 19 H 0.079 0.921 20 C -0.095 4.095 21 C -0.137 4.137 22 C -0.175 4.175 23 C -0.086 4.086 24 C -0.115 4.115 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.029 0.971 35 H 0.043 0.957 36 H 0.262 0.738 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.531 14.500 6.815 17.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C -0.205 4.205 4 C -0.009 4.009 5 N -0.329 5.329 6 C 0.127 3.873 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.296 3.704 16 O -0.421 6.421 17 C -0.186 4.186 18 C -0.087 4.087 19 H 0.098 0.902 20 C -0.131 4.131 21 C -0.155 4.155 22 C -0.193 4.193 23 C -0.123 4.123 24 C -0.153 4.153 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.800 14.324 6.602 17.176 hybrid contribution 0.155 -1.020 0.595 1.191 sum -6.645 13.305 7.198 16.522 Atomic orbital electron populations 1.21760 0.95109 1.01804 1.01315 1.21561 0.95335 0.96518 1.00230 1.21964 1.01517 0.96019 1.00959 1.21523 0.81929 1.00918 0.96504 1.48191 1.05172 1.28121 1.51379 1.19224 0.94429 0.82687 0.90998 1.21482 1.40804 0.97273 0.96722 0.92507 1.24928 0.95329 0.98707 0.95124 1.69943 1.42184 1.27775 1.13478 0.86480 0.77928 0.82390 0.80847 1.19832 1.21004 1.20909 1.20318 0.87251 0.82228 0.80652 1.90631 1.14581 1.73592 1.63284 1.22034 0.99355 0.97841 0.99412 1.20927 0.96222 0.94772 0.96824 0.90234 1.20647 0.98110 0.97992 0.96387 1.22092 0.99218 0.95594 0.98565 1.21874 1.00145 0.95545 1.01736 1.20383 0.95123 0.97351 0.99459 1.21673 0.97286 0.96809 0.99506 0.92902 0.92897 0.92482 0.90499 0.92463 0.93058 0.92760 0.90420 0.91465 0.95260 0.93887 0.92836 0.89871 0.88930 0.91452 0.88712 0.88436 0.88563 0.91228 0.91621 0.91892 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 2 C -0.12 -1.62 3.11 -90.62 -0.28 -1.90 16 3 C -0.15 -1.87 7.59 37.16 0.28 -1.58 16 4 C 0.12 1.86 4.89 -4.04 -0.02 1.84 16 5 N -0.60 -12.40 2.26 -175.06 -0.40 -12.80 16 6 C 0.25 6.40 5.22 -5.19 -0.03 6.38 16 7 C -0.52 -14.80 9.39 -34.44 -0.32 -15.12 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 11 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.51 10.30 6.14 -10.98 -0.07 10.24 16 16 O -0.54 -13.28 13.79 5.55 0.08 -13.21 16 17 C -0.15 -2.16 3.54 -27.88 -0.10 -2.26 16 18 C -0.07 -0.98 1.88 -90.40 -0.17 -1.15 16 19 H 0.08 1.28 7.88 -51.93 -0.41 0.88 16 20 C -0.09 -1.48 5.05 -28.18 -0.14 -1.62 16 21 C -0.14 -1.87 9.78 -35.83 -0.35 -2.22 16 22 C -0.17 -2.10 9.80 -35.83 -0.35 -2.45 16 23 C -0.09 -0.92 6.12 -28.18 -0.17 -1.09 16 24 C -0.12 -1.29 5.30 -26.52 -0.14 -1.43 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.23 8.01 -51.93 -0.42 0.82 16 29 H 0.06 0.86 6.87 -51.93 -0.36 0.50 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.59 6.50 -51.93 -0.34 0.25 16 32 H 0.08 1.32 8.12 -51.93 -0.42 0.89 16 33 H 0.07 0.91 6.09 -51.93 -0.32 0.59 16 34 H 0.03 0.78 7.94 -51.93 -0.41 0.37 16 35 H 0.04 1.28 7.35 -51.93 -0.38 0.89 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.08 1.13 7.31 -51.93 -0.38 0.75 16 38 H 0.09 1.17 4.81 -51.93 -0.25 0.92 16 39 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 40 H 0.09 1.81 6.43 -51.93 -0.33 1.48 16 41 H 0.10 1.25 8.06 -52.48 -0.42 0.83 16 42 H 0.10 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 LS Contribution 355.37 15.07 5.36 5.36 Total: -1.00 -31.66 355.37 -9.07 -40.73 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -8.21 Total: 0.93 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -1.62 Total: -11.96 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.34 Total: -38.75 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.08 Total: -13.21 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.66 -9.07 -40.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930902780.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.388 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds