Wall clock time and date at job start Tue Mar 31 2020 02:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46929 * 2 1 4 4 C 1.52996 * 109.46534 * 119.99703 * 2 1 3 5 5 N 1.46506 * 109.46745 * 174.15347 * 4 2 1 6 6 C 1.46497 * 119.99945 * 276.69815 * 5 4 2 7 7 C 1.50701 * 109.47073 * 269.99788 * 6 5 4 8 8 H 1.07994 * 120.00133 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00035 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00057 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00187 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46910 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46826 * 120.00060 * 11 9 7 14 14 H 1.48494 * 109.47538 * 240.00390 * 11 9 7 15 15 C 1.34779 * 119.99654 * 96.69661 * 5 4 2 16 16 O 1.21287 * 119.99654 * 185.35747 * 15 5 4 17 17 C 1.50703 * 120.00298 * 5.36332 * 15 5 4 18 18 C 1.53001 * 109.46991 * 174.33736 * 17 15 5 19 19 H 1.09003 * 109.63863 * 55.41902 * 18 17 15 20 20 C 1.53026 * 109.64189 * 294.99695 * 18 17 15 21 21 C 1.50065 * 110.03210 * 190.95374 * 20 18 17 22 22 C 1.29170 * 124.28739 * 17.04035 * 21 20 18 23 23 C 1.50071 * 123.99357 * 359.61930 * 22 21 20 24 24 C 1.53022 * 110.14245 * 17.08708 * 23 22 21 25 25 H 1.08996 * 109.47445 * 300.00513 * 1 2 3 26 26 H 1.09010 * 109.46706 * 60.00480 * 1 2 3 27 27 H 1.08995 * 109.47558 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46993 * 239.99694 * 2 1 3 29 29 H 1.09002 * 109.46538 * 184.69283 * 3 2 1 30 30 H 1.09002 * 109.46846 * 304.69173 * 3 2 1 31 31 H 1.09001 * 109.47484 * 64.69304 * 3 2 1 32 32 H 1.09000 * 109.47458 * 54.15556 * 4 2 1 33 33 H 1.09000 * 109.47079 * 294.14967 * 4 2 1 34 34 H 1.08996 * 109.47351 * 30.00324 * 6 5 4 35 35 H 1.09000 * 109.46917 * 150.00553 * 6 5 4 36 36 H 0.96994 * 120.00620 * 179.97438 * 10 9 7 37 37 H 1.09000 * 109.47150 * 54.33442 * 17 15 5 38 38 H 1.09002 * 109.46866 * 294.33741 * 17 15 5 39 39 H 1.09003 * 109.35718 * 311.08848 * 20 18 17 40 40 H 1.08993 * 109.35691 * 70.81179 * 20 18 17 41 41 H 1.08003 * 117.95985 * 197.04145 * 21 20 18 42 42 H 1.07998 * 118.04383 * 179.54783 * 22 21 20 43 43 H 1.08991 * 109.35362 * 256.88079 * 23 22 21 44 44 H 1.08992 * 109.35768 * 137.29191 * 23 22 21 45 45 H 1.09005 * 109.63721 * 190.87893 * 24 23 22 46 46 H 1.08994 * 109.81853 * 70.35554 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4982 -0.8443 1.1811 6 6 4.1060 -1.9432 0.4267 7 6 4.3008 -3.1292 1.3359 8 1 4.0014 -3.0704 2.3718 9 6 4.8603 -4.2897 0.8448 10 7 5.2245 -4.3615 -0.4169 11 14 5.1025 -5.7596 1.9719 12 1 4.6148 -5.4245 3.3339 13 1 4.3388 -6.9189 1.4444 14 1 6.5456 -6.1040 2.0333 15 6 4.2804 0.0536 1.8123 16 8 5.4849 0.0097 1.6767 17 6 3.6586 1.1118 2.6867 18 6 4.7617 1.9050 3.3902 19 1 5.4492 2.3128 2.6491 20 6 5.5238 0.9873 4.3487 21 6 6.4226 1.8005 5.2334 22 6 6.3097 3.0750 5.4109 23 6 5.2654 3.9251 4.7485 24 6 4.1377 3.0457 4.2040 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1268 1.4436 -0.0841 30 1 1.6096 1.9800 -0.8450 31 1 1.7469 1.9316 0.9290 32 1 1.5936 -1.7142 1.3032 33 1 1.7645 -0.1504 2.1361 34 1 3.4520 -2.2222 -0.3994 35 1 5.0714 -1.6240 0.0341 36 1 5.6185 -5.1778 -0.7623 37 1 3.0199 0.6380 3.4321 38 1 3.0616 1.7859 2.0724 39 1 4.8122 0.4371 4.9645 40 1 6.1242 0.2826 3.7734 41 1 7.2164 1.2882 5.7568 42 1 7.0085 3.5587 6.0773 43 1 5.7190 4.4804 3.9276 44 1 4.8571 4.6274 5.4751 45 1 3.4869 3.6400 3.5625 46 1 3.5594 2.6326 5.0304 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930902780.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:25 Heat of formation + Delta-G solvation = -69.350268 kcal Electronic energy + Delta-G solvation = -22958.520410 eV Core-core repulsion = 19846.416431 eV Total energy + Delta-G solvation = -3112.103979 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.13053 -39.20693 -37.63138 -35.51564 -34.09100 -33.67058 -31.57466 -30.01410 -28.38166 -27.67140 -26.78905 -24.87613 -23.91211 -22.06549 -21.36460 -19.62106 -18.87878 -18.55304 -17.87063 -17.17148 -16.76281 -16.45269 -16.09126 -15.54089 -15.27137 -14.83169 -14.63556 -14.46472 -14.11179 -13.94493 -13.68383 -13.54290 -13.40360 -13.21908 -13.07757 -12.83031 -12.77750 -12.76287 -12.54265 -12.37138 -12.22733 -11.99021 -11.81119 -11.60799 -11.57533 -11.52246 -11.33347 -10.93472 -10.66167 -10.39312 -9.83596 -9.33187 -8.23011 -6.38321 1.33877 1.36326 1.45587 1.48123 1.92542 2.32122 2.49174 3.05935 3.69672 3.77377 3.86638 3.94533 4.07392 4.13034 4.26930 4.32359 4.43809 4.50369 4.53523 4.61333 4.68925 4.76055 4.77210 4.82189 4.88141 4.94859 4.96400 5.06159 5.08030 5.10114 5.10234 5.14891 5.25480 5.27000 5.30933 5.43504 5.44905 5.52312 5.55538 5.59767 5.82185 5.89939 6.07175 6.12297 6.70811 6.88160 7.28651 7.57862 8.83959 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.005902 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.354082 B = 4742.759845 C = 6432.998569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.110 3.890 5 N -0.603 5.603 6 C 0.264 3.736 7 C -0.539 4.539 8 H 0.053 0.947 9 C 0.007 3.993 10 N -0.930 5.930 11 Si 0.967 3.033 12 H -0.266 1.266 13 H -0.268 1.268 14 H -0.282 1.282 15 C 0.498 3.502 16 O -0.596 6.596 17 C -0.131 4.131 18 C -0.067 4.067 19 H 0.054 0.946 20 C -0.092 4.092 21 C -0.169 4.169 22 C -0.156 4.156 23 C -0.091 4.091 24 C -0.107 4.107 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.041 0.959 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.015 0.985 35 H -0.007 1.007 36 H 0.266 0.734 37 H 0.106 0.894 38 H 0.123 0.877 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.095 0.905 42 H 0.115 0.885 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.072 16.529 9.037 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.134 4.134 3 C -0.200 4.200 4 C -0.012 4.012 5 N -0.333 5.333 6 C 0.143 3.857 7 C -0.578 4.578 8 H 0.071 0.929 9 C -0.192 4.192 10 N -0.570 5.570 11 Si 0.791 3.209 12 H -0.190 1.190 13 H -0.194 1.194 14 H -0.208 1.208 15 C 0.288 3.712 16 O -0.478 6.478 17 C -0.171 4.171 18 C -0.086 4.086 19 H 0.073 0.927 20 C -0.129 4.129 21 C -0.187 4.187 22 C -0.174 4.174 23 C -0.128 4.128 24 C -0.145 4.145 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.033 0.967 35 H 0.011 0.989 36 H 0.075 0.925 37 H 0.124 0.876 38 H 0.141 0.859 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.114 0.886 42 H 0.133 0.867 43 H 0.093 0.907 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.390 16.374 8.831 20.839 hybrid contribution 0.990 -1.609 -0.145 1.894 sum -8.400 14.766 8.686 19.080 Atomic orbital electron populations 1.21706 0.92126 1.02173 1.03195 1.21509 0.97673 0.96748 0.97445 1.21935 0.99454 0.95347 1.03295 1.21849 0.78667 1.01372 0.99336 1.48192 1.07448 1.26912 1.50758 1.18605 0.92129 0.83988 0.91007 1.21740 1.41088 0.98271 0.96703 0.92862 1.25867 0.94757 1.01872 0.96688 1.70068 1.42746 1.28825 1.15329 0.85380 0.77846 0.78719 0.78948 1.19009 1.19354 1.20825 1.21403 0.86701 0.82721 0.80337 1.90609 1.17209 1.75052 1.64934 1.22049 0.99658 0.96368 0.98984 1.20911 0.95699 0.95648 0.96339 0.92744 1.20516 0.98087 0.97841 0.96481 1.22016 1.00067 0.96538 1.00043 1.22217 1.00004 0.94816 1.00389 1.20514 0.94607 0.97427 1.00226 1.21656 0.97651 0.95521 0.99633 0.90383 0.91612 0.92958 0.94000 0.95615 0.91327 0.89847 0.91690 0.87685 0.96684 0.98904 0.92477 0.87556 0.85925 0.91324 0.93693 0.88647 0.86670 0.90738 0.88736 0.89379 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.19 71.98 0.66 -1.91 16 2 C -0.11 -3.06 3.11 -10.79 -0.03 -3.09 16 3 C -0.14 -3.32 7.59 71.98 0.55 -2.78 16 4 C 0.11 3.47 4.89 86.38 0.42 3.89 16 5 N -0.60 -26.03 2.26 -826.14 -1.87 -27.90 16 6 C 0.26 14.75 5.22 85.63 0.45 15.20 16 7 C -0.54 -31.83 9.39 25.60 0.24 -31.59 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.01 0.40 5.46 84.65 0.46 0.87 16 10 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 11 Si 0.97 45.84 29.54 68.60 2.03 47.87 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 13 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 14 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 15 C 0.50 20.94 6.14 87.66 0.54 21.48 16 16 O -0.60 -31.44 13.79 -3.05 -0.04 -31.48 16 17 C -0.13 -3.66 3.54 29.85 0.11 -3.55 16 18 C -0.07 -1.86 1.88 -10.65 -0.02 -1.88 16 19 H 0.05 1.78 7.88 -2.39 -0.02 1.76 16 20 C -0.09 -2.95 5.05 29.66 0.15 -2.80 16 21 C -0.17 -4.59 9.78 27.30 0.27 -4.32 16 22 C -0.16 -3.41 9.80 27.30 0.27 -3.14 16 23 C -0.09 -1.60 6.12 29.66 0.18 -1.42 16 24 C -0.11 -1.98 5.30 30.73 0.16 -1.82 16 25 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.04 1.40 8.01 -2.39 -0.02 1.38 16 29 H 0.02 0.75 6.87 -2.39 -0.02 0.73 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.43 6.50 -2.39 -0.02 1.42 16 32 H 0.06 2.20 8.12 -2.39 -0.02 2.18 16 33 H 0.11 2.49 6.09 -2.39 -0.01 2.48 16 34 H 0.02 0.87 7.94 -2.39 -0.02 0.85 16 35 H -0.01 -0.47 7.35 -2.39 -0.02 -0.48 16 36 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 37 H 0.11 2.52 7.31 -2.39 -0.02 2.51 16 38 H 0.12 2.67 4.81 -2.39 -0.01 2.66 16 39 H 0.07 2.08 8.08 -2.39 -0.02 2.06 16 40 H 0.04 1.87 6.43 -2.39 -0.02 1.85 16 41 H 0.10 2.54 8.06 -2.91 -0.02 2.51 16 42 H 0.12 2.08 8.06 -2.91 -0.02 2.05 16 43 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 46 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 Total: -1.00 -75.64 355.37 5.72 -69.92 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.92 Total: 15.85 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 4.40 Total: -16.88 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -1.58 Total: -85.28 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -0.04 Total: -31.48 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -75.64 5.72 -69.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930902780.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.570 kcal (2) G-P(sol) polarization free energy of solvation -75.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds