Wall clock time and date at job start Tue Mar 31 2020 03:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47152 * 2 1 4 4 N 1.46497 * 109.47147 * 119.99840 * 2 1 3 5 5 C 1.46499 * 120.00612 * 300.00012 * 4 2 1 6 6 C 1.50701 * 109.47260 * 270.00459 * 5 4 2 7 7 H 1.08002 * 119.99761 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99694 * 180.27562 * 6 5 4 9 9 N 1.31514 * 120.00482 * 359.71466 * 8 6 5 10 10 Si 1.86801 * 119.99746 * 179.72062 * 8 6 5 11 11 H 1.48494 * 109.47230 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47301 * 119.99669 * 10 8 6 13 13 H 1.48498 * 109.47430 * 239.99516 * 10 8 6 14 14 C 1.34779 * 119.99637 * 120.00527 * 4 2 1 15 15 O 1.21287 * 120.00127 * 180.02562 * 14 4 2 16 16 C 1.50703 * 120.00320 * 359.97438 * 14 4 2 17 17 H 1.08999 * 112.88276 * 50.33842 * 16 14 4 18 18 C 1.53960 * 113.66351 * 278.98598 * 16 14 4 19 19 C 1.53422 * 86.19009 * 219.00227 * 18 16 14 20 20 H 1.08994 * 110.51572 * 274.73319 * 19 18 16 21 21 C 1.50504 * 115.76048 * 147.18567 * 19 18 16 22 22 C 1.51627 * 114.40395 * 289.99481 * 21 19 18 23 23 C 1.52605 * 111.07088 * 313.09733 * 22 21 19 24 24 C 1.52986 * 108.82754 * 63.70048 * 23 22 21 25 25 C 1.52536 * 87.71140 * 26.80235 * 19 18 16 26 26 H 1.08995 * 114.79076 * 218.46159 * 25 19 18 27 27 H 1.08999 * 109.46832 * 299.99931 * 1 2 3 28 28 H 1.08998 * 109.46919 * 59.99974 * 1 2 3 29 29 H 1.08996 * 109.46516 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47480 * 240.00448 * 2 1 3 31 31 H 1.08994 * 109.47258 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47025 * 300.00316 * 3 2 1 33 33 H 1.09005 * 109.46814 * 60.00137 * 3 2 1 34 34 H 1.09000 * 109.47197 * 149.99465 * 5 4 2 35 35 H 1.09007 * 109.46342 * 30.00037 * 5 4 2 36 36 H 0.96995 * 120.00207 * 179.97438 * 9 8 6 37 37 H 1.09004 * 113.75355 * 333.30843 * 18 16 14 38 38 H 1.08999 * 113.74714 * 104.63733 * 18 16 14 39 39 H 1.09005 * 108.49733 * 168.72078 * 21 19 18 40 40 H 1.08995 * 108.50005 * 51.27066 * 21 19 18 41 41 H 1.08996 * 109.16170 * 192.69166 * 22 21 19 42 42 H 1.08991 * 109.11620 * 73.47473 * 22 21 19 43 43 H 1.09001 * 109.57774 * 303.90247 * 23 22 21 44 44 H 1.08998 * 109.57935 * 183.51105 * 23 22 21 45 45 H 1.09007 * 109.51315 * 176.41179 * 24 23 22 46 46 H 1.08999 * 109.51421 * 56.25529 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6645 -0.1901 2.5268 6 6 2.7032 0.8019 2.9830 7 1 3.5431 1.0358 2.3457 8 6 2.5844 1.4060 4.2166 9 7 1.5618 1.1209 4.9928 10 14 3.8761 2.6298 4.7854 11 1 4.9168 2.7747 3.7361 12 1 3.2355 3.9465 5.0330 13 1 4.5031 2.1408 6.0396 14 6 2.7933 -1.7863 1.0724 15 8 3.1973 -2.3584 2.0627 16 6 3.1570 -2.3015 -0.2963 17 1 3.5542 -1.5248 -0.9498 18 6 2.0534 -3.1537 -0.9491 19 6 3.1900 -4.0452 -1.4663 20 1 3.5902 -3.6505 -2.4001 21 6 2.8683 -5.5104 -1.5880 22 6 2.7025 -6.2276 -0.2623 23 6 3.8381 -5.8791 0.6958 24 6 3.7738 -4.3843 1.0147 25 6 4.0138 -3.5852 -0.2678 26 1 5.0704 -3.4179 -0.4766 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6238 -1.0227 3.2291 35 1 0.6904 0.2973 2.4843 36 1 1.4785 1.5457 5.8608 37 1 1.3989 -3.6489 -0.2318 38 1 1.5073 -2.6356 -1.7375 39 1 3.6697 -5.9952 -2.1456 40 1 1.9441 -5.6156 -2.1560 41 1 2.6984 -7.3036 -0.4358 42 1 1.7535 -5.9340 0.1861 43 1 4.7948 -6.1120 0.2283 44 1 3.7293 -6.4540 1.6155 45 1 4.5409 -4.1351 1.7480 46 1 2.7909 -4.1399 1.4176 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931325205.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:01 Heat of formation + Delta-G solvation = -30.745265 kcal Electronic energy + Delta-G solvation = -23627.830222 eV Core-core repulsion = 20517.400281 eV Total energy + Delta-G solvation = -3110.429940 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.93722 -38.23564 -35.85375 -34.15544 -32.75228 -30.98688 -30.62477 -28.02195 -26.71084 -26.16010 -24.75662 -23.03964 -22.22637 -21.49319 -20.58175 -17.92345 -17.54271 -16.77957 -16.38282 -15.65462 -15.13545 -14.71810 -14.53583 -14.22551 -13.74615 -13.58987 -13.45663 -13.20682 -12.46300 -12.38507 -12.28371 -12.04916 -11.97574 -11.59352 -11.56396 -11.42946 -11.28997 -11.13250 -10.89362 -10.81531 -10.72382 -10.58072 -10.37428 -10.26961 -10.15496 -9.93610 -9.77725 -9.58664 -9.42227 -8.39573 -8.38153 -7.52165 -5.99757 -4.02633 3.31271 3.39056 3.42038 3.50638 4.02087 4.47903 4.55242 4.64283 4.81366 4.91768 5.09783 5.22258 5.29124 5.30466 5.34628 5.47606 5.54883 5.62875 5.70849 5.71247 5.76190 5.81803 5.86155 5.93191 5.97569 6.04804 6.10065 6.19218 6.21486 6.27495 6.32396 6.33611 6.38749 6.40662 6.61113 6.64964 6.80321 6.98279 7.01251 7.19423 7.53075 7.66751 7.98136 8.30901 8.56583 8.97771 9.22949 9.61805 11.08341 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.021672 B = 0.005309 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.656420 B = 5273.274137 C = 5929.935118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.135 3.865 3 C -0.157 4.157 4 N -0.592 5.592 5 C 0.246 3.754 6 C -0.515 4.515 7 H 0.058 0.942 8 C 0.059 3.941 9 N -0.896 5.896 10 Si 0.893 3.107 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.514 3.486 15 O -0.535 6.535 16 C -0.139 4.139 17 H 0.103 0.897 18 C -0.118 4.118 19 C -0.101 4.101 20 H 0.079 0.921 21 C -0.101 4.101 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.089 4.089 25 C -0.075 4.075 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.040 0.960 35 H 0.032 0.968 36 H 0.261 0.739 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.070 0.930 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.041 -8.950 -15.219 17.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.030 3.970 3 C -0.215 4.215 4 N -0.323 5.323 5 C 0.126 3.874 6 C -0.554 4.554 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.536 5.536 10 Si 0.721 3.279 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.301 3.699 15 O -0.413 6.413 16 C -0.160 4.160 17 H 0.121 0.879 18 C -0.156 4.156 19 C -0.119 4.119 20 H 0.098 0.902 21 C -0.139 4.139 22 C -0.153 4.153 23 C -0.162 4.162 24 C -0.126 4.126 25 C -0.094 4.094 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.153 -9.183 -14.505 17.168 hybrid contribution 0.690 0.993 0.312 1.249 sum 0.843 -8.190 -14.193 16.408 Atomic orbital electron populations 1.22152 0.95809 1.01679 1.02269 1.20960 0.93910 0.93904 0.88230 1.22147 1.01292 0.95937 1.02167 1.48343 1.49287 1.26340 1.08339 1.19208 0.95765 0.94893 0.77507 1.21484 1.08810 1.23271 1.01828 0.92420 1.24920 0.95727 0.97145 0.96405 1.69941 1.29565 1.43544 1.10545 0.86515 0.81749 0.80823 0.78772 1.19870 1.21086 1.20997 1.20152 0.78970 0.80620 0.90195 1.90666 1.53563 1.57207 1.39842 1.22963 0.99372 0.97522 0.96189 0.87944 1.22911 0.95875 0.97059 0.99712 1.21633 0.97388 0.94805 0.98117 0.90238 1.20505 1.01118 0.94694 0.97554 1.21135 0.99403 0.99015 0.95758 1.21554 0.97979 0.98064 0.98589 1.21536 1.04589 0.91452 0.95066 1.22137 0.97821 0.93925 0.95496 0.90837 0.91432 0.92453 0.92967 0.90705 0.92851 0.93421 0.90142 0.94192 0.95011 0.92925 0.89741 0.91278 0.92689 0.92315 0.92634 0.92331 0.92692 0.92333 0.91104 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.17 37.16 0.34 -2.05 16 2 C 0.13 2.22 3.13 -67.93 -0.21 2.01 16 3 C -0.16 -2.64 8.47 37.16 0.31 -2.33 16 4 N -0.59 -12.35 2.39 -167.46 -0.40 -12.75 16 5 C 0.25 6.33 4.60 -5.19 -0.02 6.31 16 6 C -0.51 -14.36 7.83 -34.44 -0.27 -14.63 16 7 H 0.06 1.62 7.63 -52.49 -0.40 1.22 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 10 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.51 10.53 6.75 -10.98 -0.07 10.45 16 15 O -0.53 -12.97 12.25 5.55 0.07 -12.90 16 16 C -0.14 -2.11 2.64 -90.61 -0.24 -2.35 16 17 H 0.10 1.42 7.38 -51.93 -0.38 1.04 16 18 C -0.12 -1.49 6.45 -26.01 -0.17 -1.65 16 19 C -0.10 -1.15 3.63 -91.94 -0.33 -1.48 16 20 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 21 C -0.10 -1.04 5.51 -28.67 -0.16 -1.20 16 22 C -0.12 -1.29 5.76 -27.63 -0.16 -1.45 16 23 C -0.12 -1.57 5.90 -26.94 -0.16 -1.73 16 24 C -0.09 -1.41 3.66 -26.74 -0.10 -1.51 16 25 C -0.07 -1.06 4.20 -90.14 -0.38 -1.44 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.07 1.15 6.66 -51.93 -0.35 0.80 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.05 5.33 -51.93 -0.28 0.77 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.59 6.92 -51.93 -0.36 1.23 16 34 H 0.04 1.18 7.42 -51.93 -0.39 0.79 16 35 H 0.03 0.83 6.43 -51.93 -0.33 0.50 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.08 1.18 7.41 -51.93 -0.38 0.80 16 38 H 0.07 0.75 8.00 -51.93 -0.42 0.34 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.70 7.95 -51.93 -0.41 0.28 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 1.27 7.58 -51.92 -0.39 0.88 16 46 H 0.08 1.50 5.36 -51.93 -0.28 1.22 16 LS Contribution 343.87 15.07 5.18 5.18 Total: -1.00 -30.86 343.87 -9.30 -40.17 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -8.15 Total: 0.72 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -1.71 Total: -11.46 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.34 Total: -38.66 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.07 Total: -12.90 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.86 -9.30 -40.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931325205.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.421 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds