Wall clock time and date at job start Tue Mar 31 2020 03:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47341 * 2 1 4 4 N 1.46501 * 109.46946 * 119.99695 * 2 1 3 5 5 C 1.46502 * 120.00270 * 305.12360 * 4 2 1 6 6 C 1.50695 * 109.47155 * 270.00021 * 5 4 2 7 7 H 1.08002 * 120.00058 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00135 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00038 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00068 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47208 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46638 * 120.00537 * 10 8 6 13 13 H 1.48499 * 109.47109 * 240.00426 * 10 8 6 14 14 C 1.34779 * 119.99698 * 125.12940 * 4 2 1 15 15 O 1.21281 * 119.99845 * 185.44787 * 14 4 2 16 16 C 1.50695 * 120.00099 * 5.43785 * 14 4 2 17 17 H 1.09003 * 108.69412 * 27.10461 * 16 14 4 18 18 C 1.51584 * 108.73112 * 145.31867 * 16 14 4 19 19 C 1.52697 * 111.46588 * 188.19278 * 18 16 14 20 20 C 1.53670 * 108.94521 * 268.95760 * 19 18 16 21 21 H 1.09004 * 115.93752 * 288.82949 * 20 19 18 22 22 C 1.53006 * 117.07871 * 142.03297 * 20 19 18 23 23 C 1.53716 * 115.48617 * 73.19254 * 20 19 18 24 24 H 1.09000 * 118.14672 * 217.20450 * 23 20 19 25 25 C 1.53677 * 115.46896 * 359.97438 * 23 20 19 26 26 C 1.51581 * 108.73692 * 269.00510 * 16 14 4 27 27 H 1.09004 * 109.46906 * 300.00318 * 1 2 3 28 28 H 1.09000 * 109.47075 * 59.99825 * 1 2 3 29 29 H 1.08995 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47330 * 239.99636 * 2 1 3 31 31 H 1.08991 * 109.47317 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.46777 * 300.00104 * 3 2 1 33 33 H 1.08998 * 109.47206 * 59.99560 * 3 2 1 34 34 H 1.08996 * 109.46899 * 29.99994 * 5 4 2 35 35 H 1.08999 * 109.46785 * 150.00053 * 5 4 2 36 36 H 0.97004 * 120.00191 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.08250 * 67.68401 * 18 16 14 38 38 H 1.08999 * 109.08246 * 308.70259 * 18 16 14 39 39 H 1.08997 * 109.55792 * 149.12057 * 19 18 16 40 40 H 1.08995 * 109.64984 * 28.85024 * 19 18 16 41 41 H 1.09003 * 117.46541 * 1.59236 * 22 20 19 42 42 H 1.09006 * 117.46591 * 146.43217 * 22 20 19 43 43 H 1.09005 * 109.55906 * 166.99053 * 25 23 20 44 44 H 1.08998 * 109.56293 * 46.66725 * 25 23 20 45 45 H 1.08998 * 109.08125 * 292.30731 * 26 16 14 46 46 H 1.08999 * 109.07948 * 51.34747 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5742 -0.2588 2.5239 6 6 2.5176 0.7908 3.0524 7 1 3.3631 1.1052 2.4585 8 6 2.3008 1.3506 4.2936 9 7 1.2709 0.9681 5.0166 10 14 3.4706 2.6512 4.9490 11 1 4.5407 2.9027 3.9506 12 1 2.7220 3.9091 5.1993 13 1 4.0785 2.1760 6.2177 14 6 2.8761 -1.7230 1.0753 15 8 3.2034 -2.3575 2.0557 16 6 3.4285 -2.0892 -0.2782 17 1 3.4374 -1.1973 -0.9048 18 6 4.8531 -2.5779 -0.1066 19 6 5.5421 -2.7758 -1.4548 20 6 5.3219 -4.2238 -1.9199 21 1 5.8646 -4.9901 -1.3664 22 6 5.0848 -4.4467 -3.4150 23 6 3.9026 -4.5523 -2.4105 24 1 3.4912 -5.5337 -2.1744 25 6 2.9020 -3.3867 -2.3667 26 6 2.5159 -3.1189 -0.9141 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 0.5696 0.1581 2.4532 35 1 1.5662 -1.1137 3.2001 36 1 1.1181 1.3622 5.8897 37 1 4.8422 -3.5263 0.4306 38 1 5.4131 -1.8463 0.4758 39 1 6.6101 -2.5846 -1.3503 40 1 5.1184 -2.0888 -2.1873 41 1 5.1125 -3.5716 -4.0643 42 1 5.4676 -5.3687 -3.8527 43 1 2.0117 -3.6484 -2.9386 44 1 3.3618 -2.4948 -2.7921 45 1 2.5816 -4.0497 -0.3507 46 1 1.4892 -2.7542 -0.8808 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931326897.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:53 Heat of formation + Delta-G solvation = -32.961074 kcal Electronic energy + Delta-G solvation = -23362.788081 eV Core-core repulsion = 20252.262055 eV Total energy + Delta-G solvation = -3110.526025 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.07060 -38.41540 -35.94068 -34.19812 -32.72462 -31.84722 -30.75155 -28.11180 -26.76796 -26.34653 -24.11747 -23.01187 -21.78769 -21.37139 -20.37037 -18.89602 -17.95060 -16.81914 -16.41774 -16.10659 -15.09581 -14.80631 -14.44605 -14.29183 -13.63256 -13.44635 -13.31851 -13.04981 -12.91569 -12.43480 -12.30791 -12.14624 -11.93755 -11.91724 -11.66364 -11.47474 -11.26189 -11.15120 -10.90838 -10.83685 -10.65003 -10.59989 -10.47021 -10.40962 -10.22057 -9.94114 -9.80767 -9.69533 -9.48232 -8.64170 -8.39323 -7.56635 -6.00646 -4.03871 3.30595 3.38334 3.41332 3.50718 3.67900 3.96050 4.46479 4.49795 4.70130 4.77413 5.02230 5.04230 5.11924 5.22256 5.28717 5.33506 5.38576 5.46757 5.57701 5.60482 5.65857 5.67811 5.68737 5.76656 5.86681 5.99571 6.02786 6.05131 6.12614 6.17906 6.20392 6.27877 6.33958 6.34553 6.39213 6.47869 6.60664 6.64638 6.97466 7.18985 7.53492 7.64678 7.97145 8.29852 8.53706 8.96236 9.19497 9.60502 11.07422 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023438 B = 0.004843 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.378042 B = 5780.034093 C = 6233.745139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 C -0.160 4.160 4 N -0.593 5.593 5 C 0.243 3.757 6 C -0.518 4.518 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.509 3.491 15 O -0.545 6.545 16 C -0.103 4.103 17 H 0.081 0.919 18 C -0.098 4.098 19 C -0.088 4.088 20 C -0.146 4.146 21 H 0.102 0.898 22 C -0.177 4.177 23 C -0.152 4.152 24 H 0.103 0.897 25 C -0.086 4.086 26 C -0.104 4.104 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.034 0.966 35 H 0.041 0.959 36 H 0.261 0.739 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.886 -6.302 -17.848 19.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 C -0.218 4.218 4 N -0.325 5.325 5 C 0.124 3.876 6 C -0.557 4.557 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.722 3.278 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.296 3.704 15 O -0.423 6.423 16 C -0.124 4.124 17 H 0.099 0.901 18 C -0.136 4.136 19 C -0.126 4.126 20 C -0.164 4.164 21 H 0.120 0.880 22 C -0.214 4.214 23 C -0.170 4.170 24 H 0.122 0.878 25 C -0.123 4.123 26 C -0.142 4.142 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.943 -6.577 -17.116 18.571 hybrid contribution 0.604 0.819 0.515 1.140 sum 3.546 -5.759 -16.601 17.926 Atomic orbital electron populations 1.22144 0.95528 1.01781 1.02454 1.21029 0.94156 0.93864 0.88263 1.22183 1.01146 0.96115 1.02334 1.48323 1.44625 1.30967 1.08554 1.19246 0.95134 0.95723 0.77493 1.21495 1.11162 1.21068 1.01966 0.92364 1.24928 0.95509 0.97165 0.96584 1.69946 1.28430 1.43102 1.11980 0.86511 0.81020 0.81291 0.79019 1.19843 1.21052 1.20970 1.20386 0.79391 0.80464 0.90189 1.90644 1.59438 1.52102 1.40083 1.20894 0.96340 0.99607 0.95591 0.90050 1.20984 0.93430 1.02631 0.96544 1.21303 1.00289 0.93865 0.97103 1.22751 0.99307 0.98423 0.95951 0.87982 1.23450 1.02776 1.02723 0.92445 1.23090 0.89853 0.99735 1.04311 0.87849 1.21252 0.97925 0.96822 0.96315 1.21097 0.98455 0.99264 0.95406 0.91156 0.92354 0.92931 0.90483 0.92967 0.93331 0.90046 0.94802 0.94081 0.92899 0.90881 0.91671 0.91628 0.91699 0.88987 0.89162 0.91545 0.91528 0.91194 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.07 37.16 0.34 -2.08 16 2 C 0.13 2.16 2.94 -67.93 -0.20 1.96 16 3 C -0.16 -2.63 8.61 37.16 0.32 -2.31 16 4 N -0.59 -12.52 2.39 -167.47 -0.40 -12.92 16 5 C 0.24 6.33 4.77 -5.20 -0.02 6.30 16 6 C -0.52 -14.46 7.85 -34.44 -0.27 -14.73 16 7 H 0.06 1.63 7.59 -52.49 -0.40 1.23 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 10 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.51 10.69 6.52 -10.99 -0.07 10.61 16 15 O -0.54 -13.94 15.88 5.56 0.09 -13.85 16 16 C -0.10 -1.57 1.28 -93.21 -0.12 -1.69 16 17 H 0.08 1.14 5.92 -51.93 -0.31 0.83 16 18 C -0.10 -1.44 4.38 -27.60 -0.12 -1.56 16 19 C -0.09 -1.00 5.41 -26.54 -0.14 -1.14 16 20 C -0.15 -1.52 5.58 -89.90 -0.50 -2.02 16 21 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 22 C -0.18 -1.57 9.96 -25.40 -0.25 -1.83 16 23 C -0.15 -1.52 5.76 -88.57 -0.51 -2.03 16 24 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 25 C -0.09 -0.88 5.44 -26.55 -0.14 -1.02 16 26 C -0.10 -1.36 4.59 -27.62 -0.13 -1.48 16 27 H 0.07 1.21 6.52 -51.93 -0.34 0.87 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.07 5.03 -51.93 -0.26 0.81 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.59 6.93 -51.93 -0.36 1.23 16 34 H 0.03 0.89 6.17 -51.93 -0.32 0.57 16 35 H 0.04 1.23 7.35 -51.93 -0.38 0.85 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.07 1.17 7.68 -51.93 -0.40 0.77 16 38 H 0.06 1.06 8.09 -51.93 -0.42 0.64 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.69 6.20 -51.93 -0.32 0.37 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.66 6.20 -51.93 -0.32 0.33 16 45 H 0.07 1.00 7.78 -51.93 -0.40 0.59 16 46 H 0.06 0.85 7.77 -51.93 -0.40 0.44 16 LS Contribution 348.99 15.07 5.26 5.26 Total: -1.00 -31.72 348.99 -9.26 -40.99 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -8.00 Total: 0.95 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -1.93 Total: -11.42 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.34 Total: -38.79 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.09 Total: -13.85 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.72 -9.26 -40.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931326897.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.027 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds