Wall clock time and date at job start Tue Mar 31 2020 03:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47341 * 2 1 4 4 N 1.46501 * 109.46946 * 119.99695 * 2 1 3 5 5 C 1.46502 * 120.00270 * 305.12360 * 4 2 1 6 6 C 1.50695 * 109.47155 * 270.00021 * 5 4 2 7 7 H 1.08002 * 120.00058 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00135 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00038 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00068 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47208 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46638 * 120.00537 * 10 8 6 13 13 H 1.48499 * 109.47109 * 240.00426 * 10 8 6 14 14 C 1.34779 * 119.99698 * 125.12940 * 4 2 1 15 15 O 1.21281 * 119.99845 * 185.44787 * 14 4 2 16 16 C 1.50695 * 120.00099 * 5.43785 * 14 4 2 17 17 H 1.09003 * 108.69412 * 27.10461 * 16 14 4 18 18 C 1.51584 * 108.73112 * 145.31867 * 16 14 4 19 19 C 1.52697 * 111.46588 * 188.19278 * 18 16 14 20 20 C 1.53670 * 108.94521 * 268.95760 * 19 18 16 21 21 H 1.09004 * 115.93752 * 288.82949 * 20 19 18 22 22 C 1.53006 * 117.07871 * 142.03297 * 20 19 18 23 23 C 1.53716 * 115.48617 * 73.19254 * 20 19 18 24 24 H 1.09000 * 118.14672 * 217.20450 * 23 20 19 25 25 C 1.53677 * 115.46896 * 359.97438 * 23 20 19 26 26 C 1.51581 * 108.73692 * 269.00510 * 16 14 4 27 27 H 1.09004 * 109.46906 * 300.00318 * 1 2 3 28 28 H 1.09000 * 109.47075 * 59.99825 * 1 2 3 29 29 H 1.08995 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47330 * 239.99636 * 2 1 3 31 31 H 1.08991 * 109.47317 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.46777 * 300.00104 * 3 2 1 33 33 H 1.08998 * 109.47206 * 59.99560 * 3 2 1 34 34 H 1.08996 * 109.46899 * 29.99994 * 5 4 2 35 35 H 1.08999 * 109.46785 * 150.00053 * 5 4 2 36 36 H 0.97004 * 120.00191 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.08250 * 67.68401 * 18 16 14 38 38 H 1.08999 * 109.08246 * 308.70259 * 18 16 14 39 39 H 1.08997 * 109.55792 * 149.12057 * 19 18 16 40 40 H 1.08995 * 109.64984 * 28.85024 * 19 18 16 41 41 H 1.09003 * 117.46541 * 1.59236 * 22 20 19 42 42 H 1.09006 * 117.46591 * 146.43217 * 22 20 19 43 43 H 1.09005 * 109.55906 * 166.99053 * 25 23 20 44 44 H 1.08998 * 109.56293 * 46.66725 * 25 23 20 45 45 H 1.08998 * 109.08125 * 292.30731 * 26 16 14 46 46 H 1.08999 * 109.07948 * 51.34747 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5742 -0.2588 2.5239 6 6 2.5176 0.7908 3.0524 7 1 3.3631 1.1052 2.4585 8 6 2.3008 1.3506 4.2936 9 7 1.2709 0.9681 5.0166 10 14 3.4706 2.6512 4.9490 11 1 4.5407 2.9027 3.9506 12 1 2.7220 3.9091 5.1993 13 1 4.0785 2.1760 6.2177 14 6 2.8761 -1.7230 1.0753 15 8 3.2034 -2.3575 2.0557 16 6 3.4285 -2.0892 -0.2782 17 1 3.4374 -1.1973 -0.9048 18 6 4.8531 -2.5779 -0.1066 19 6 5.5421 -2.7758 -1.4548 20 6 5.3219 -4.2238 -1.9199 21 1 5.8646 -4.9901 -1.3664 22 6 5.0848 -4.4467 -3.4150 23 6 3.9026 -4.5523 -2.4105 24 1 3.4912 -5.5337 -2.1744 25 6 2.9020 -3.3867 -2.3667 26 6 2.5159 -3.1189 -0.9141 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 0.5696 0.1581 2.4532 35 1 1.5662 -1.1137 3.2001 36 1 1.1181 1.3622 5.8897 37 1 4.8422 -3.5263 0.4306 38 1 5.4131 -1.8463 0.4758 39 1 6.6101 -2.5846 -1.3503 40 1 5.1184 -2.0888 -2.1873 41 1 5.1125 -3.5716 -4.0643 42 1 5.4676 -5.3687 -3.8527 43 1 2.0117 -3.6484 -2.9386 44 1 3.3618 -2.4948 -2.7921 45 1 2.5816 -4.0497 -0.3507 46 1 1.4892 -2.7542 -0.8808 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931326897.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:52 Heat of formation + Delta-G solvation = -50.519197 kcal Electronic energy + Delta-G solvation = -23363.549458 eV Core-core repulsion = 20252.262055 eV Total energy + Delta-G solvation = -3111.287402 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.45748 -39.57383 -37.57941 -35.46616 -34.74939 -32.81261 -32.39793 -29.82250 -28.11828 -27.72286 -25.16553 -24.89050 -22.93364 -22.41204 -21.68635 -19.73161 -19.46076 -18.60077 -18.33790 -17.21362 -16.76321 -16.23451 -15.86117 -15.66816 -15.10381 -14.85960 -14.66282 -14.27513 -14.01089 -13.85430 -13.76482 -13.53297 -13.23788 -13.19574 -12.88814 -12.85215 -12.75096 -12.71381 -12.52273 -12.21919 -12.11866 -12.10238 -11.79751 -11.57786 -11.54627 -11.46583 -11.36011 -10.67298 -10.62723 -10.61658 -10.17171 -9.39422 -8.20238 -6.32526 1.34175 1.36628 1.47974 1.85495 2.30684 2.45105 2.91354 3.09215 3.55199 3.59473 3.85942 3.96301 4.04331 4.08170 4.15483 4.27173 4.31995 4.41248 4.42881 4.48911 4.54231 4.77745 4.81444 4.84339 4.87087 4.88222 4.94373 5.01380 5.05266 5.09584 5.13331 5.17978 5.19312 5.24541 5.29282 5.32913 5.39419 5.44116 5.51132 5.57933 5.58469 5.64847 5.91203 6.11430 6.74329 6.86552 7.31275 7.53073 8.87279 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023438 B = 0.004843 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.378042 B = 5780.034093 C = 6233.745139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.123 3.877 3 C -0.155 4.155 4 N -0.597 5.597 5 C 0.261 3.739 6 C -0.526 4.526 7 H 0.054 0.946 8 C 0.006 3.994 9 N -0.931 5.931 10 Si 0.962 3.038 11 H -0.266 1.266 12 H -0.270 1.270 13 H -0.284 1.284 14 C 0.496 3.504 15 O -0.604 6.604 16 C -0.087 4.087 17 H 0.106 0.894 18 C -0.095 4.095 19 C -0.078 4.078 20 C -0.164 4.164 21 H 0.096 0.904 22 C -0.153 4.153 23 C -0.161 4.161 24 H 0.102 0.898 25 C -0.077 4.077 26 C -0.100 4.100 27 H 0.038 0.962 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.115 0.885 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.043 0.957 34 H 0.027 0.973 35 H -0.012 1.012 36 H 0.265 0.735 37 H 0.050 0.950 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.049 0.951 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.522 -5.420 -21.616 22.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.021 3.979 3 C -0.213 4.213 4 N -0.327 5.327 5 C 0.139 3.861 6 C -0.565 4.565 7 H 0.072 0.928 8 C -0.193 4.193 9 N -0.571 5.571 10 Si 0.787 3.213 11 H -0.191 1.191 12 H -0.195 1.195 13 H -0.210 1.210 14 C 0.286 3.714 15 O -0.486 6.486 16 C -0.108 4.108 17 H 0.123 0.877 18 C -0.133 4.133 19 C -0.115 4.115 20 C -0.182 4.182 21 H 0.114 0.886 22 C -0.190 4.190 23 C -0.180 4.180 24 H 0.120 0.880 25 C -0.114 4.114 26 C -0.138 4.138 27 H 0.057 0.943 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.133 0.867 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.006 0.994 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.105 0.895 44 H 0.099 0.901 45 H 0.068 0.932 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.567 -5.679 -20.937 21.985 hybrid contribution 0.370 0.500 1.713 1.823 sum 3.938 -5.179 -19.224 20.295 Atomic orbital electron populations 1.22112 0.94263 1.02128 1.02876 1.21461 0.95256 0.93920 0.87271 1.22126 1.00620 0.95938 1.02594 1.48392 1.44623 1.31381 1.08313 1.18668 0.94778 0.93103 0.79509 1.21695 1.11142 1.21301 1.02313 0.92775 1.25819 0.97161 0.99429 0.96865 1.70068 1.30138 1.44455 1.12434 0.85449 0.78962 0.78820 0.78092 1.19052 1.19501 1.21046 1.21557 0.78447 0.79424 0.91989 1.90606 1.61329 1.54022 1.42677 1.20909 0.96574 1.01319 0.91973 0.87653 1.20963 0.93247 1.00619 0.98483 1.21212 1.00337 0.95031 0.94925 1.22728 1.00105 0.97613 0.97747 0.88610 1.23513 1.00532 1.03774 0.91181 1.23151 0.89785 0.99749 1.05277 0.88007 1.21208 0.98948 0.97461 0.93808 1.21096 0.98002 0.97437 0.97258 0.94322 0.88224 0.92677 0.86694 0.93724 0.88995 0.93775 0.95552 0.99366 0.92634 0.93164 0.94090 0.90891 0.89950 0.87659 0.87960 0.89545 0.90122 0.93169 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.42 9.07 71.98 0.65 -3.76 16 2 C 0.12 3.85 2.94 44.99 0.13 3.98 16 3 C -0.15 -4.82 8.61 71.98 0.62 -4.20 16 4 N -0.60 -25.87 2.39 -802.15 -1.92 -27.78 16 5 C 0.26 14.37 4.77 85.63 0.41 14.78 16 6 C -0.53 -30.51 7.85 25.60 0.20 -30.31 16 7 H 0.05 3.11 7.59 -2.91 -0.02 3.09 16 8 C 0.01 0.33 5.46 84.65 0.46 0.79 16 9 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 10 Si 0.96 45.71 29.54 68.60 2.03 47.74 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 14 C 0.50 21.57 6.52 87.66 0.57 22.14 16 15 O -0.60 -33.07 15.88 -3.03 -0.05 -33.12 16 16 C -0.09 -2.57 1.28 -12.47 -0.02 -2.59 16 17 H 0.11 2.61 5.92 -2.39 -0.01 2.60 16 18 C -0.09 -2.80 4.38 30.03 0.13 -2.67 16 19 C -0.08 -1.59 5.41 30.72 0.17 -1.42 16 20 C -0.16 -3.05 5.58 -10.32 -0.06 -3.11 16 21 H 0.10 1.88 8.14 -2.39 -0.02 1.87 16 22 C -0.15 -2.12 9.96 31.46 0.31 -1.81 16 23 C -0.16 -2.78 5.76 -9.47 -0.05 -2.83 16 24 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 25 C -0.08 -1.29 5.44 30.71 0.17 -1.12 16 26 C -0.10 -2.43 4.59 30.02 0.14 -2.30 16 27 H 0.04 1.33 6.52 -2.39 -0.02 1.32 16 28 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.12 2.74 5.03 -2.39 -0.01 2.73 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 32 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.04 1.71 6.93 -2.39 -0.02 1.69 16 34 H 0.03 1.48 6.17 -2.39 -0.01 1.47 16 35 H -0.01 -0.77 7.35 -2.39 -0.02 -0.78 16 36 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 37 H 0.05 1.69 7.68 -2.39 -0.02 1.67 16 38 H 0.04 1.37 8.09 -2.39 -0.02 1.35 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.08 1.41 6.20 -2.39 -0.01 1.39 16 41 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.08 1.16 6.20 -2.39 -0.01 1.14 16 45 H 0.05 1.43 7.78 -2.39 -0.02 1.41 16 46 H 0.07 1.62 7.77 -2.39 -0.02 1.61 16 Total: -1.00 -74.79 348.99 5.12 -69.66 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.94 Total: 14.97 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 3.84 Total: -14.42 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -1.63 Total: -84.83 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.05 Total: -33.12 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -74.79 5.12 -69.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931326897.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.143 kcal (2) G-P(sol) polarization free energy of solvation -74.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds