Wall clock time and date at job start Tue Mar 31 2020 03:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46986 * 2 1 4 4 N 1.46494 * 109.47600 * 119.99849 * 2 1 3 5 5 C 1.46498 * 120.00077 * 120.62537 * 4 2 1 6 6 C 1.50700 * 109.47451 * 264.86522 * 5 4 2 7 7 H 1.07999 * 120.00027 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00036 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00201 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00098 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47372 * 89.99633 * 10 8 6 12 12 H 1.48500 * 109.47258 * 210.00094 * 10 8 6 13 13 H 1.48502 * 109.47045 * 329.99910 * 10 8 6 14 14 C 1.34783 * 120.00111 * 300.63673 * 4 2 1 15 15 O 1.21280 * 119.99660 * 3.47507 * 14 4 2 16 16 C 1.50698 * 120.00261 * 183.48290 * 14 4 2 17 17 H 1.09000 * 108.69649 * 25.90665 * 16 14 4 18 18 C 1.51581 * 108.63524 * 267.75014 * 16 14 4 19 19 C 1.52690 * 111.47435 * 171.86412 * 18 16 14 20 20 C 1.53677 * 108.95180 * 91.04376 * 19 18 16 21 21 H 1.08995 * 116.32555 * 141.87960 * 20 19 18 22 22 C 1.55499 * 117.50644 * 353.91044 * 20 19 18 23 23 C 1.53001 * 59.76943 * 255.23303 * 22 20 19 24 24 H 1.08996 * 118.09188 * 251.64338 * 23 22 20 25 25 C 1.53673 * 117.07630 * 105.57495 * 23 22 20 26 26 C 1.51570 * 108.73547 * 144.12431 * 16 14 4 27 27 H 1.09002 * 109.47053 * 306.40012 * 1 2 3 28 28 H 1.08999 * 109.47436 * 66.40670 * 1 2 3 29 29 H 1.09004 * 109.46943 * 186.40424 * 1 2 3 30 30 H 1.08998 * 109.47103 * 240.00007 * 2 1 3 31 31 H 1.08998 * 109.47305 * 182.17732 * 3 2 1 32 32 H 1.09006 * 109.46779 * 302.17077 * 3 2 1 33 33 H 1.08996 * 109.47420 * 62.17175 * 3 2 1 34 34 H 1.08993 * 109.47158 * 24.86962 * 5 4 2 35 35 H 1.09000 * 109.47119 * 144.86594 * 5 4 2 36 36 H 0.96993 * 119.99946 * 179.97438 * 9 8 6 37 37 H 1.08993 * 109.07913 * 292.38058 * 18 16 14 38 38 H 1.09002 * 109.08046 * 51.35089 * 18 16 14 39 39 H 1.09008 * 109.55280 * 331.20774 * 19 18 16 40 40 H 1.08996 * 109.64747 * 210.94301 * 19 18 16 41 41 H 1.09001 * 117.29150 * 147.77540 * 22 20 19 42 42 H 1.08996 * 117.96418 * 2.39938 * 22 20 19 43 43 H 1.09002 * 109.55604 * 244.49045 * 25 23 22 44 44 H 1.09002 * 109.55729 * 124.17812 * 25 23 22 45 45 H 1.09002 * 109.08279 * 308.59213 * 26 16 14 46 46 H 1.08998 * 109.08276 * 67.56999 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.8720 -1.8736 1.0617 6 6 2.0229 -3.1165 1.1334 7 1 0.9543 -3.0336 1.2663 8 6 2.6103 -4.3596 1.0305 9 7 1.8694 -5.4444 1.0936 10 14 4.4587 -4.5032 0.8014 11 1 5.1180 -4.5761 2.1300 12 1 4.7676 -5.7322 0.0274 13 1 4.9599 -3.3152 0.0647 14 6 1.6824 -0.2376 2.4202 15 8 0.9249 0.7030 2.5319 16 6 2.2478 -0.8998 3.6502 17 1 3.1983 -1.3658 3.3904 18 6 1.2851 -1.9785 4.1055 19 6 1.8836 -2.8249 5.2265 20 6 1.5012 -2.2040 6.5793 21 1 1.2648 -2.9023 7.3821 22 6 0.7582 -0.8382 6.5582 23 6 2.2378 -0.9045 6.9423 24 1 2.5050 -0.7393 7.9860 25 6 3.2535 -0.4076 5.9016 26 6 2.4977 0.1615 4.7032 27 1 -0.3633 0.6098 0.8272 28 1 -0.3634 0.4113 -0.9417 29 1 -0.3633 -1.0213 0.1146 30 1 1.8933 -0.5138 -0.8900 31 1 3.1293 1.4428 -0.0390 32 1 1.6451 1.9674 -0.8699 33 1 1.7088 1.9450 0.9088 34 1 3.3890 -1.8415 0.1027 35 1 3.6043 -1.8868 1.8689 36 1 2.2826 -6.3188 1.0208 37 1 0.3684 -1.5100 4.4633 38 1 1.0474 -2.6239 3.2599 39 1 2.9691 -2.8455 5.1284 40 1 1.4926 -3.8406 5.1676 41 1 0.0399 -0.6476 7.3556 42 1 0.5093 -0.4067 5.5887 43 1 3.8796 -1.2388 5.5771 44 1 3.8769 0.3702 6.3427 45 1 3.0831 0.9689 4.2634 46 1 1.5412 0.5598 5.0416 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931326899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:57 Heat of formation + Delta-G solvation = -12.704439 kcal Electronic energy + Delta-G solvation = -24061.456999 eV Core-core repulsion = 20951.809368 eV Total energy + Delta-G solvation = -3109.647631 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.32522 -38.64989 -35.44226 -33.85614 -32.66323 -31.53891 -31.27380 -27.64643 -26.91349 -26.65151 -23.82700 -23.39205 -22.37383 -21.18974 -18.88793 -18.58203 -17.97873 -16.99831 -16.30708 -16.24988 -15.42288 -14.70459 -14.47809 -14.03390 -13.62769 -13.39483 -13.09088 -12.88445 -12.65616 -12.57887 -12.52663 -12.23209 -11.84566 -11.66988 -11.46545 -11.43414 -11.26816 -10.96321 -10.92860 -10.73956 -10.63166 -10.37801 -10.26437 -10.20211 -9.94897 -9.68524 -9.65111 -9.49385 -9.26259 -8.72034 -8.59522 -7.69298 -6.21300 -4.21238 3.16335 3.24499 3.26536 3.43026 3.86296 3.99252 4.26336 4.92518 5.03476 5.07840 5.08787 5.24864 5.29189 5.33979 5.50106 5.57743 5.63934 5.69803 5.78086 5.83290 5.99085 6.01250 6.06479 6.08162 6.11685 6.15716 6.22817 6.28173 6.32093 6.42214 6.45089 6.53021 6.54355 6.57904 6.66832 6.69605 6.71559 6.73406 6.88194 6.95912 7.16337 7.44281 7.48507 8.19963 8.44356 8.83223 9.03641 9.38583 10.90799 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012434 B = 0.008654 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.323695 B = 3234.740403 C = 4636.060361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.147 3.853 3 C -0.165 4.165 4 N -0.589 5.589 5 C 0.206 3.794 6 C -0.533 4.533 7 H 0.081 0.919 8 C 0.079 3.921 9 N -0.889 5.889 10 Si 0.866 3.134 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.266 1.266 14 C 0.526 3.474 15 O -0.568 6.568 16 C -0.096 4.096 17 H 0.087 0.913 18 C -0.121 4.121 19 C -0.081 4.081 20 C -0.152 4.152 21 H 0.098 0.902 22 C -0.190 4.190 23 C -0.154 4.154 24 H 0.096 0.904 25 C -0.090 4.090 26 C -0.112 4.112 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.032 0.968 35 H 0.029 0.971 36 H 0.266 0.734 37 H 0.065 0.935 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.121 0.879 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.055 0.945 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.483 8.317 6.047 10.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 C -0.223 4.223 4 N -0.319 5.319 5 C 0.085 3.915 6 C -0.571 4.571 7 H 0.099 0.901 8 C -0.125 4.125 9 N -0.526 5.526 10 Si 0.693 3.307 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.315 3.685 15 O -0.448 6.448 16 C -0.117 4.117 17 H 0.105 0.895 18 C -0.158 4.158 19 C -0.118 4.118 20 C -0.170 4.170 21 H 0.116 0.884 22 C -0.227 4.227 23 C -0.172 4.172 24 H 0.114 0.886 25 C -0.127 4.127 26 C -0.150 4.150 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.120 0.880 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.139 0.861 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.118 8.585 6.049 10.714 hybrid contribution 1.091 -0.500 -0.174 1.212 sum 3.209 8.086 5.875 10.497 Atomic orbital electron populations 1.22162 0.95397 1.02853 1.01738 1.20843 0.94556 0.92147 0.88081 1.22189 1.00352 0.97008 1.02790 1.48069 1.50117 1.29116 1.04611 1.19877 0.90669 0.83804 0.97163 1.21328 0.96090 0.88537 1.51152 0.90120 1.24835 0.97594 0.95675 0.94400 1.69883 1.35526 0.97887 1.49336 0.87001 0.86493 0.78210 0.78987 1.19835 1.21002 1.19025 1.20521 0.80552 0.82738 0.84725 1.90517 1.37098 1.30220 1.87012 1.20807 1.01243 0.96673 0.93016 0.89481 1.21457 0.97433 0.96706 1.00181 1.21088 1.00695 0.98795 0.91267 1.23226 1.04555 0.89752 0.99474 0.88387 1.23966 0.94028 1.00834 1.03821 1.22722 0.93451 1.02144 0.98860 0.88620 1.21193 0.96803 1.00147 0.94545 1.21353 1.01658 0.97229 0.94744 0.90731 0.93210 0.92206 0.90140 0.93368 0.92555 0.90829 0.95049 0.95304 0.92435 0.91695 0.87980 0.91476 0.91252 0.89800 0.86116 0.91139 0.91959 0.92576 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 8.99 37.16 0.33 -2.59 16 2 C 0.15 2.67 3.27 -67.93 -0.22 2.45 16 3 C -0.17 -2.62 9.16 37.16 0.34 -2.28 16 4 N -0.59 -11.85 2.42 -167.48 -0.41 -12.26 16 5 C 0.21 4.46 4.01 -5.19 -0.02 4.44 16 6 C -0.53 -13.39 8.11 -34.44 -0.28 -13.67 16 7 H 0.08 2.28 7.41 -52.49 -0.39 1.89 16 8 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 9 N -0.89 -24.98 13.96 55.43 0.77 -24.21 16 10 Si 0.87 19.44 27.47 -169.99 -4.67 14.77 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.27 -5.69 6.54 56.52 0.37 -5.32 16 14 C 0.53 10.48 5.87 -10.98 -0.06 10.41 16 15 O -0.57 -12.00 12.65 5.56 0.07 -11.93 16 16 C -0.10 -1.72 1.50 -93.21 -0.14 -1.86 16 17 H 0.09 1.60 5.51 -51.93 -0.29 1.32 16 18 C -0.12 -2.21 4.58 -27.61 -0.13 -2.33 16 19 C -0.08 -1.33 5.64 -26.54 -0.15 -1.48 16 20 C -0.15 -2.14 6.61 -88.56 -0.59 -2.72 16 21 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 22 C -0.19 -2.62 8.49 -25.40 -0.22 -2.84 16 23 C -0.15 -2.00 6.46 -89.89 -0.58 -2.58 16 24 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 25 C -0.09 -1.20 5.64 -26.54 -0.15 -1.35 16 26 C -0.11 -1.74 4.18 -27.61 -0.12 -1.85 16 27 H 0.07 1.43 6.23 -51.93 -0.32 1.10 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.08 1.42 7.73 -51.93 -0.40 1.02 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.29 6.28 -51.93 -0.33 0.97 16 34 H 0.03 0.68 6.88 -51.93 -0.36 0.32 16 35 H 0.03 0.61 5.31 -51.93 -0.28 0.34 16 36 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.06 1.18 5.40 -51.93 -0.28 0.90 16 38 H 0.10 2.24 5.40 -51.93 -0.28 1.96 16 39 H 0.07 1.10 6.29 -51.92 -0.33 0.77 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.12 1.87 3.45 -51.93 -0.18 1.70 16 43 H 0.07 0.97 6.29 -51.93 -0.33 0.65 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 46 H 0.08 1.32 5.14 -51.93 -0.27 1.06 16 LS Contribution 332.24 15.07 5.01 5.01 Total: -1.00 -27.15 332.24 -8.71 -35.86 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -7.41 Total: 9.07 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -2.07 Total: -16.32 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.37 Total: -36.46 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.93 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.67 Total: 14.77 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.15 -8.71 -35.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931326899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.157 kcal (2) G-P(sol) polarization free energy of solvation -27.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds