Wall clock time and date at job start Tue Mar 31 2020 01:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47307 * 2 1 4 4 C 1.53001 * 109.47307 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47069 * 185.09246 * 4 3 2 6 6 C 1.50705 * 115.54895 * 303.30525 * 5 4 3 7 7 O 1.21286 * 119.99933 * 112.60721 * 6 5 4 8 8 N 1.34775 * 119.99924 * 292.60734 * 6 5 4 9 9 C 1.46925 * 120.62968 * 174.46182 * 8 6 5 10 10 C 1.53190 * 108.77474 * 233.63042 * 9 8 6 11 11 C 1.53043 * 109.31665 * 305.36498 * 10 9 8 12 12 C 1.50694 * 109.46328 * 181.38726 * 11 10 9 13 13 H 1.07993 * 120.00098 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99743 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99459 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00009 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46884 * 90.00337 * 16 14 12 18 18 H 1.48497 * 109.46980 * 210.00310 * 16 14 12 19 19 H 1.48501 * 109.47293 * 330.00347 * 16 14 12 20 20 C 1.53039 * 109.53624 * 61.36020 * 11 10 9 21 21 C 1.46924 * 120.63014 * 354.48417 * 8 6 5 22 22 C 1.53000 * 117.49919 * 88.97254 * 5 4 3 23 23 C 1.52995 * 117.50030 * 157.63503 * 5 4 3 24 24 H 1.08993 * 109.47082 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46741 * 299.99905 * 1 2 3 26 26 H 1.09004 * 109.46858 * 59.99911 * 1 2 3 27 27 H 1.09003 * 109.47134 * 240.00444 * 2 1 3 28 28 H 1.09002 * 109.47528 * 120.00412 * 2 1 3 29 29 H 1.09003 * 109.46661 * 60.00155 * 3 2 1 30 30 H 1.09002 * 109.47163 * 300.00636 * 3 2 1 31 31 H 1.08997 * 109.46802 * 65.09550 * 4 3 2 32 32 H 1.09000 * 109.47108 * 305.09229 * 4 3 2 33 33 H 1.08994 * 109.58780 * 113.84155 * 9 8 6 34 34 H 1.08998 * 109.70352 * 353.48417 * 9 8 6 35 35 H 1.09005 * 109.49973 * 185.41129 * 10 9 8 36 36 H 1.09001 * 109.49845 * 65.31414 * 10 9 8 37 37 H 1.09001 * 109.45530 * 301.35200 * 11 10 9 38 38 H 0.97005 * 119.99379 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.49365 * 58.59349 * 20 11 10 40 40 H 1.09004 * 109.49674 * 178.68677 * 20 11 10 41 41 H 1.09007 * 109.58539 * 246.15644 * 21 8 6 42 42 H 1.08999 * 109.59065 * 6.58342 * 21 8 6 43 43 H 1.08992 * 117.49815 * 215.00293 * 22 5 4 44 44 H 1.08999 * 117.49438 * 0.02629 * 22 5 4 45 45 H 1.09008 * 117.49600 * 359.97438 * 23 5 4 46 46 H 1.08996 * 117.50129 * 144.99729 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8793 0.1274 6 6 3.5924 3.8386 -0.9277 7 8 2.8440 4.7437 -0.6249 8 7 3.9879 3.6907 -2.2075 9 6 3.4282 4.5409 -3.2670 10 6 2.8744 3.6436 -4.3783 11 6 3.9727 2.6891 -4.8528 12 6 3.4415 1.8279 -5.9695 13 1 2.4227 1.9487 -6.3067 14 6 4.2559 0.8849 -6.5599 15 7 3.7924 0.1337 -7.5348 16 14 6.0179 0.6755 -5.9761 17 1 6.0616 -0.3315 -4.8856 18 1 6.8631 0.2168 -7.1077 19 1 6.5298 1.9747 -5.4709 20 6 4.4154 1.7994 -3.6890 21 6 4.9866 2.6758 -2.5699 22 6 4.2932 3.4302 1.5388 23 6 5.4990 3.0802 0.6632 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.9329 1.0099 -0.9330 32 1 3.9338 0.8516 0.8400 33 1 4.2104 5.1830 -3.6717 34 1 2.6254 5.1553 -2.8595 35 1 2.5432 4.2609 -5.2133 36 1 2.0324 3.0673 -3.9949 37 1 4.8244 3.2661 -5.2131 38 1 4.3653 -0.5300 -7.9499 39 1 3.5589 1.2405 -3.3121 40 1 5.1811 1.1042 -4.0334 41 1 5.8961 3.1659 -2.9177 42 1 5.2117 2.0578 -1.7006 43 1 4.0808 4.4863 1.7042 44 1 4.0705 2.7688 2.3761 45 1 6.0691 2.1886 0.9248 46 1 6.0798 3.9061 0.2526 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935319477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:20 Heat of formation + Delta-G solvation = -33.308343 kcal Electronic energy + Delta-G solvation = -23459.347313 eV Core-core repulsion = 20348.806230 eV Total energy + Delta-G solvation = -3110.541084 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = -0.38 seconds Orbital eigenvalues (eV) -40.40371 -37.68099 -36.64272 -34.90869 -33.50318 -31.50800 -30.69637 -29.89629 -26.70770 -24.85457 -23.44863 -22.85290 -22.38211 -21.58724 -20.97679 -19.58414 -18.12126 -16.79700 -16.54092 -16.00941 -15.49091 -15.17508 -14.67435 -14.39449 -14.03260 -13.72920 -13.45922 -13.35593 -12.98761 -12.80632 -12.60844 -12.48845 -12.21762 -11.99754 -11.87786 -11.63339 -11.41821 -11.34929 -11.05250 -11.00029 -10.74018 -10.54977 -10.33050 -10.19077 -10.15004 -9.95633 -9.77566 -9.45588 -9.29747 -9.08695 -8.58960 -8.17690 -6.11656 -4.10787 2.78966 3.18226 3.23508 3.30155 3.34544 3.66381 4.34733 4.44146 4.61158 4.74764 4.87279 5.05356 5.09922 5.16486 5.22355 5.37637 5.47543 5.50174 5.53316 5.61433 5.66858 5.74868 5.75173 5.80997 5.82397 5.88251 5.93036 5.96372 5.99150 6.02580 6.07437 6.18819 6.21125 6.29671 6.35441 6.41725 6.62826 6.63684 6.75559 6.90313 7.16818 7.46353 7.70023 7.75814 8.43826 8.48097 8.92950 9.50357 11.01755 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015335 B = 0.006140 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.444524 B = 4559.398722 C = 5108.472522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.116 4.116 4 C -0.081 4.081 5 C -0.151 4.151 6 C 0.552 3.448 7 O -0.551 6.551 8 N -0.595 5.595 9 C 0.108 3.892 10 C -0.112 4.112 11 C 0.015 3.985 12 C -0.512 4.512 13 H 0.073 0.927 14 C 0.069 3.931 15 N -0.900 5.900 16 Si 0.885 3.115 17 H -0.278 1.278 18 H -0.297 1.297 19 H -0.265 1.265 20 C -0.135 4.135 21 C 0.100 3.900 22 C -0.145 4.145 23 C -0.164 4.164 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.027 0.973 38 H 0.263 0.737 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.123 2.269 16.816 17.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.154 4.154 4 C -0.118 4.118 5 C -0.154 4.154 6 C 0.339 3.661 7 O -0.429 6.429 8 N -0.327 5.327 9 C -0.013 4.013 10 C -0.151 4.151 11 C -0.004 4.004 12 C -0.550 4.550 13 H 0.091 0.909 14 C -0.133 4.133 15 N -0.539 5.539 16 Si 0.715 3.285 17 H -0.205 1.205 18 H -0.225 1.225 19 H -0.190 1.190 20 C -0.173 4.173 21 C -0.022 4.022 22 C -0.182 4.182 23 C -0.201 4.201 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.763 2.614 16.813 17.106 hybrid contribution 1.056 -0.404 0.056 1.132 sum 2.818 2.210 16.869 17.245 Atomic orbital electron populations 1.21756 0.95930 1.01379 1.01852 1.21520 0.95974 0.96713 1.01924 1.21550 0.94457 0.96818 1.02577 1.21245 0.96271 0.91319 1.02972 1.21452 1.01140 0.97073 0.95768 1.19435 0.80173 0.84034 0.82419 1.90642 1.37296 1.33913 1.81085 1.48038 1.41838 1.36280 1.06536 1.21769 0.98442 0.93074 0.88060 1.21824 0.99392 0.97746 0.96093 1.19123 0.94617 0.93714 0.92932 1.21039 1.00299 1.17826 1.15825 0.90860 1.25041 0.98123 0.95452 0.94674 1.69900 1.36586 1.22650 1.24721 0.86885 0.85467 0.78742 0.77392 1.20526 1.22478 1.19001 1.22379 1.00431 0.98412 0.96064 1.22001 0.90632 0.90306 0.99307 1.22982 1.00698 1.02434 0.92120 1.23107 0.89971 1.03733 1.03326 0.92915 0.93022 0.92513 0.91669 0.92354 0.91905 0.91756 0.90370 0.91106 0.92091 0.89981 0.91351 0.92329 0.95463 0.92670 0.91587 0.92496 0.92014 0.90126 0.88136 0.88137 0.87904 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.31 16 2 C -0.12 -1.42 5.93 -26.73 -0.16 -1.58 16 3 C -0.12 -1.49 4.90 -26.73 -0.13 -1.62 16 4 C -0.08 -0.97 4.82 -26.73 -0.13 -1.10 16 5 C -0.15 -1.96 0.84 -155.66 -0.13 -2.09 16 6 C 0.55 9.15 6.06 -10.98 -0.07 9.08 16 7 O -0.55 -10.72 16.19 5.55 0.09 -10.63 16 8 N -0.60 -9.98 2.97 -172.77 -0.51 -10.50 16 9 C 0.11 1.87 6.41 -3.71 -0.02 1.84 16 10 C -0.11 -2.18 5.30 -26.61 -0.14 -2.32 16 11 C 0.02 0.33 1.66 -91.73 -0.15 0.18 16 12 C -0.51 -13.83 9.14 -34.44 -0.31 -14.14 16 13 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 14 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 15 N -0.90 -26.96 13.96 55.43 0.77 -26.18 16 16 Si 0.88 20.91 24.38 -169.99 -4.14 16.76 16 17 H -0.28 -6.31 6.86 56.52 0.39 -5.92 16 18 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.26 -5.91 6.53 56.52 0.37 -5.54 16 20 C -0.13 -2.67 4.85 -26.61 -0.13 -2.80 16 21 C 0.10 1.62 5.78 -3.71 -0.02 1.60 16 22 C -0.14 -1.61 9.76 -26.69 -0.26 -1.87 16 23 C -0.16 -1.74 9.26 -26.70 -0.25 -1.98 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.99 7.66 -51.93 -0.40 0.59 16 31 H 0.08 1.02 6.27 -51.93 -0.33 0.69 16 32 H 0.07 0.71 8.10 -51.93 -0.42 0.28 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.42 7.05 -51.93 -0.37 1.05 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.06 1.19 3.24 -51.93 -0.17 1.02 16 41 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 42 H 0.08 1.13 4.35 -51.93 -0.23 0.90 16 43 H 0.10 1.22 8.03 -51.93 -0.42 0.80 16 44 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.10 0.90 8.14 -51.92 -0.42 0.47 16 46 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 350.25 15.07 5.28 5.28 Total: -1.00 -30.38 350.25 -8.37 -38.75 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -8.21 Total: 2.82 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -1.63 Total: -16.29 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.26 Total: -36.68 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.14 Total: 16.76 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.38 -8.37 -38.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935319477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.440 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.38 seconds