Wall clock time and date at job start Tue Mar 31 2020 01:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47307 * 2 1 4 4 C 1.53001 * 109.47307 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47069 * 185.09246 * 4 3 2 6 6 C 1.50705 * 115.54895 * 303.30525 * 5 4 3 7 7 O 1.21286 * 119.99933 * 112.60721 * 6 5 4 8 8 N 1.34775 * 119.99924 * 292.60734 * 6 5 4 9 9 C 1.46925 * 120.62968 * 174.46182 * 8 6 5 10 10 C 1.53190 * 108.77474 * 233.63042 * 9 8 6 11 11 C 1.53043 * 109.31665 * 305.36498 * 10 9 8 12 12 C 1.50694 * 109.46328 * 181.38726 * 11 10 9 13 13 H 1.07993 * 120.00098 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99743 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99459 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00009 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46884 * 90.00337 * 16 14 12 18 18 H 1.48497 * 109.46980 * 210.00310 * 16 14 12 19 19 H 1.48501 * 109.47293 * 330.00347 * 16 14 12 20 20 C 1.53039 * 109.53624 * 61.36020 * 11 10 9 21 21 C 1.46924 * 120.63014 * 354.48417 * 8 6 5 22 22 C 1.53000 * 117.49919 * 88.97254 * 5 4 3 23 23 C 1.52995 * 117.50030 * 157.63503 * 5 4 3 24 24 H 1.08993 * 109.47082 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46741 * 299.99905 * 1 2 3 26 26 H 1.09004 * 109.46858 * 59.99911 * 1 2 3 27 27 H 1.09003 * 109.47134 * 240.00444 * 2 1 3 28 28 H 1.09002 * 109.47528 * 120.00412 * 2 1 3 29 29 H 1.09003 * 109.46661 * 60.00155 * 3 2 1 30 30 H 1.09002 * 109.47163 * 300.00636 * 3 2 1 31 31 H 1.08997 * 109.46802 * 65.09550 * 4 3 2 32 32 H 1.09000 * 109.47108 * 305.09229 * 4 3 2 33 33 H 1.08994 * 109.58780 * 113.84155 * 9 8 6 34 34 H 1.08998 * 109.70352 * 353.48417 * 9 8 6 35 35 H 1.09005 * 109.49973 * 185.41129 * 10 9 8 36 36 H 1.09001 * 109.49845 * 65.31414 * 10 9 8 37 37 H 1.09001 * 109.45530 * 301.35200 * 11 10 9 38 38 H 0.97005 * 119.99379 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.49365 * 58.59349 * 20 11 10 40 40 H 1.09004 * 109.49674 * 178.68677 * 20 11 10 41 41 H 1.09007 * 109.58539 * 246.15644 * 21 8 6 42 42 H 1.08999 * 109.59065 * 6.58342 * 21 8 6 43 43 H 1.08992 * 117.49815 * 215.00293 * 22 5 4 44 44 H 1.08999 * 117.49438 * 0.02629 * 22 5 4 45 45 H 1.09008 * 117.49600 * 359.97438 * 23 5 4 46 46 H 1.08996 * 117.50129 * 144.99729 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8793 0.1274 6 6 3.5924 3.8386 -0.9277 7 8 2.8440 4.7437 -0.6249 8 7 3.9879 3.6907 -2.2075 9 6 3.4282 4.5409 -3.2670 10 6 2.8744 3.6436 -4.3783 11 6 3.9727 2.6891 -4.8528 12 6 3.4415 1.8279 -5.9695 13 1 2.4227 1.9487 -6.3067 14 6 4.2559 0.8849 -6.5599 15 7 3.7924 0.1337 -7.5348 16 14 6.0179 0.6755 -5.9761 17 1 6.0616 -0.3315 -4.8856 18 1 6.8631 0.2168 -7.1077 19 1 6.5298 1.9747 -5.4709 20 6 4.4154 1.7994 -3.6890 21 6 4.9866 2.6758 -2.5699 22 6 4.2932 3.4302 1.5388 23 6 5.4990 3.0802 0.6632 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.9329 1.0099 -0.9330 32 1 3.9338 0.8516 0.8400 33 1 4.2104 5.1830 -3.6717 34 1 2.6254 5.1553 -2.8595 35 1 2.5432 4.2609 -5.2133 36 1 2.0324 3.0673 -3.9949 37 1 4.8244 3.2661 -5.2131 38 1 4.3653 -0.5300 -7.9499 39 1 3.5589 1.2405 -3.3121 40 1 5.1811 1.1042 -4.0334 41 1 5.8961 3.1659 -2.9177 42 1 5.2117 2.0578 -1.7006 43 1 4.0808 4.4863 1.7042 44 1 4.0705 2.7688 2.3761 45 1 6.0691 2.1886 0.9248 46 1 6.0798 3.9061 0.2526 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935319477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:18 Heat of formation + Delta-G solvation = -50.462947 kcal Electronic energy + Delta-G solvation = -23460.091193 eV Core-core repulsion = 20348.806230 eV Total energy + Delta-G solvation = -3111.284963 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.62817 -39.00035 -37.90707 -35.83547 -35.29868 -33.37339 -32.15769 -30.84029 -28.42415 -26.03310 -24.82101 -24.22390 -23.33545 -22.97647 -21.92658 -21.08957 -19.45662 -18.82172 -17.77024 -17.23778 -16.69344 -16.45085 -16.19129 -15.55294 -15.35592 -14.99013 -14.95503 -14.70043 -14.42985 -14.01949 -13.96741 -13.82502 -13.69075 -13.49336 -13.03023 -12.80923 -12.45477 -12.35911 -12.31317 -12.23657 -12.11540 -11.96707 -11.79458 -11.51913 -11.49210 -11.24317 -11.18191 -11.03540 -10.86780 -10.68050 -10.55692 -9.60314 -8.27524 -6.32554 1.31868 1.39627 1.49842 1.55548 2.00613 2.35260 2.75800 3.07437 3.43099 3.61611 3.87306 3.92586 4.03525 4.07172 4.12093 4.18860 4.22081 4.25535 4.34052 4.42092 4.52646 4.56516 4.69278 4.74162 4.75035 4.77704 4.82843 4.88960 4.93198 4.98937 5.01643 5.04017 5.08846 5.10116 5.17806 5.24314 5.26747 5.36503 5.40568 5.46401 5.57128 5.67309 5.74413 6.31808 6.45378 6.74075 7.15391 7.32818 8.89625 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015335 B = 0.006140 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.444524 B = 4559.398722 C = 5108.472522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.113 4.113 4 C -0.075 4.075 5 C -0.173 4.173 6 C 0.548 3.452 7 O -0.587 6.587 8 N -0.600 5.600 9 C 0.115 3.885 10 C -0.105 4.105 11 C 0.015 3.985 12 C -0.520 4.520 13 H 0.025 0.975 14 C 0.007 3.993 15 N -0.954 5.954 16 Si 0.950 3.050 17 H -0.257 1.257 18 H -0.303 1.303 19 H -0.237 1.237 20 C -0.130 4.130 21 C 0.108 3.892 22 C -0.139 4.139 23 C -0.143 4.143 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.036 0.964 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.026 0.974 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.031 0.969 38 H 0.265 0.735 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.111 0.889 43 H 0.084 0.916 44 H 0.125 0.875 45 H 0.133 0.867 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.047 1.936 20.032 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.151 4.151 4 C -0.112 4.112 5 C -0.176 4.176 6 C 0.338 3.662 7 O -0.468 6.468 8 N -0.331 5.331 9 C -0.007 4.007 10 C -0.143 4.143 11 C -0.004 4.004 12 C -0.558 4.558 13 H 0.043 0.957 14 C -0.189 4.189 15 N -0.594 5.594 16 Si 0.775 3.225 17 H -0.183 1.183 18 H -0.232 1.232 19 H -0.160 1.160 20 C -0.168 4.168 21 C -0.014 4.014 22 C -0.177 4.177 23 C -0.180 4.180 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.129 0.871 43 H 0.103 0.897 44 H 0.143 0.857 45 H 0.151 0.849 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.683 2.295 20.051 20.718 hybrid contribution -0.033 -0.256 -1.010 1.043 sum 4.650 2.039 19.040 19.706 Atomic orbital electron populations 1.21776 0.96014 1.01960 1.01342 1.21512 0.95978 0.95911 1.02443 1.21503 0.95655 0.97185 1.00763 1.21241 0.95123 0.91071 1.03814 1.21435 1.03862 0.96589 0.95732 1.20132 0.79242 0.84027 0.82809 1.90619 1.38791 1.35741 1.81655 1.48125 1.42024 1.36267 1.06679 1.21614 0.98926 0.92690 0.87464 1.21691 0.98188 0.97511 0.96940 1.19078 0.95147 0.93720 0.92425 1.21340 0.98427 1.18662 1.17358 0.95686 1.25993 1.03398 0.94921 0.94614 1.70078 1.38694 1.23920 1.26709 0.85832 0.78922 0.80451 0.77252 1.18258 1.23162 1.15990 1.22206 1.00050 0.98305 0.96251 1.22012 0.90415 0.89959 0.99047 1.23068 1.00801 1.02048 0.91746 1.23268 0.88779 1.04723 1.01228 0.91791 0.92091 0.94500 0.92903 0.89899 0.91727 0.95539 0.91356 0.87831 0.90302 0.90400 0.91694 0.94226 0.95045 0.92653 0.92806 0.92820 0.90305 0.87142 0.89699 0.85673 0.84939 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.91 71.98 0.71 -2.58 16 2 C -0.12 -2.59 5.93 30.60 0.18 -2.41 16 3 C -0.11 -2.77 4.90 30.60 0.15 -2.62 16 4 C -0.08 -1.57 4.82 30.60 0.15 -1.42 16 5 C -0.17 -3.95 0.84 -52.93 -0.04 -4.00 16 6 C 0.55 17.36 6.06 87.66 0.53 17.89 16 7 O -0.59 -22.67 16.19 -3.05 -0.05 -22.72 16 8 N -0.60 -19.10 2.97 -818.90 -2.43 -21.53 16 9 C 0.12 3.90 6.41 86.36 0.55 4.45 16 10 C -0.10 -4.17 5.30 30.67 0.16 -4.00 16 11 C 0.02 0.67 1.66 -11.51 -0.02 0.65 16 12 C -0.52 -29.15 9.14 25.60 0.23 -28.91 16 13 H 0.02 1.58 7.99 -2.91 -0.02 1.56 16 14 C 0.01 0.41 5.45 84.66 0.46 0.87 16 15 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 16 Si 0.95 42.24 24.38 68.60 1.67 43.91 16 17 H -0.26 -10.52 6.86 99.48 0.68 -9.84 16 18 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 19 H -0.24 -9.37 6.53 99.48 0.65 -8.72 16 20 C -0.13 -4.93 4.85 30.67 0.15 -4.78 16 21 C 0.11 3.14 5.78 86.36 0.50 3.64 16 22 C -0.14 -2.58 9.76 30.62 0.30 -2.28 16 23 C -0.14 -2.33 9.26 30.62 0.28 -2.05 16 24 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.03 0.83 7.66 -2.39 -0.02 0.81 16 31 H 0.07 1.56 6.27 -2.39 -0.01 1.55 16 32 H 0.10 1.52 8.10 -2.39 -0.02 1.50 16 33 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.08 2.71 7.05 -2.39 -0.02 2.69 16 35 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.03 1.37 7.20 -2.39 -0.02 1.36 16 38 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 39 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.05 2.08 3.24 -2.39 -0.01 2.07 16 41 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 42 H 0.11 2.60 4.35 -2.39 -0.01 2.59 16 43 H 0.08 1.86 8.03 -2.39 -0.02 1.84 16 44 H 0.13 1.69 8.14 -2.39 -0.02 1.68 16 45 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 46 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -69.67 350.25 4.64 -65.03 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.85 Total: 21.79 kcal Atomic # 6 Polarization: -31.87 SS G_CDS: 4.30 Total: -27.56 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -2.13 Total: -80.44 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.05 Total: -22.72 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.67 Total: 43.91 kcal Total: -69.67 4.64 -65.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935319477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.565 kcal (2) G-P(sol) polarization free energy of solvation -69.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds