Wall clock time and date at job start Tue Mar 31 2020 02:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46811 * 2 1 4 4 H 1.09004 * 109.46899 * 55.00085 * 3 2 1 5 5 C 1.50701 * 109.46846 * 174.99909 * 3 2 1 6 6 H 1.07998 * 119.99868 * 120.00298 * 5 3 2 7 7 C 1.37874 * 119.99838 * 299.99752 * 5 3 2 8 8 N 1.31523 * 119.99592 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 120.00453 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47074 * 89.99890 * 9 7 5 11 11 H 1.48498 * 109.47115 * 209.99817 * 9 7 5 12 12 H 1.48500 * 109.46768 * 329.99537 * 9 7 5 13 13 N 1.46500 * 109.46966 * 294.99924 * 3 2 1 14 14 C 1.34774 * 119.99700 * 85.00148 * 13 3 2 15 15 O 1.21284 * 120.00405 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99628 * 179.97438 * 14 13 3 17 17 C 1.52996 * 109.64007 * 299.57744 * 16 14 13 18 18 C 1.53400 * 109.63995 * 178.94572 * 16 14 13 19 19 C 1.53006 * 108.44573 * 172.89586 * 18 16 14 20 20 C 1.50067 * 110.16064 * 49.40393 * 19 18 16 21 21 C 1.50699 * 117.96487 * 162.87894 * 20 19 18 22 22 C 1.29442 * 124.07103 * 342.91090 * 20 19 18 23 23 C 1.50698 * 117.96058 * 180.42518 * 22 20 19 24 24 C 1.50071 * 124.07977 * 0.43635 * 22 20 19 25 25 H 1.09000 * 109.47296 * 299.99645 * 1 2 3 26 26 H 1.09009 * 109.46751 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47576 * 60.00341 * 1 2 3 28 28 H 1.08999 * 109.47576 * 119.99659 * 2 1 3 29 29 H 1.09000 * 109.47296 * 240.00355 * 2 1 3 30 30 H 0.96998 * 119.99591 * 180.02562 * 8 7 5 31 31 H 0.96993 * 119.99547 * 264.99803 * 13 3 2 32 32 H 1.09004 * 109.46853 * 59.99908 * 17 16 14 33 33 H 1.09000 * 109.47070 * 179.97438 * 17 16 14 34 34 H 1.08997 * 109.47496 * 300.00021 * 17 16 14 35 35 H 1.09000 * 109.63867 * 292.56504 * 18 16 14 36 36 H 1.08995 * 109.64304 * 53.19403 * 18 16 14 37 37 H 1.09000 * 109.34372 * 289.19939 * 19 18 16 38 38 H 1.09007 * 109.25181 * 169.55532 * 19 18 16 39 39 H 1.08999 * 109.47130 * 185.26352 * 21 20 19 40 40 H 1.09000 * 109.47221 * 305.27512 * 21 20 19 41 41 H 1.09007 * 109.46897 * 65.27127 * 21 20 19 42 42 H 1.09002 * 109.47245 * 175.15581 * 23 22 20 43 43 H 1.09009 * 109.46802 * 295.15280 * 23 22 20 44 44 H 1.09000 * 109.47818 * 55.14983 * 23 22 20 45 45 H 1.08994 * 109.36242 * 222.66740 * 24 22 20 46 46 H 1.09000 * 109.24475 * 103.00868 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1431 0.8786 1.2280 8 7 5.4539 0.8806 1.3363 9 14 3.0963 0.1090 2.5702 10 1 2.8755 -1.3271 2.2635 11 1 3.7936 0.2350 3.8752 12 1 1.7876 0.8075 2.6387 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6643 -1.3669 15 8 -0.3398 2.6319 -0.4344 16 6 0.0365 3.3386 -2.6545 17 6 0.9984 4.4909 -2.9507 18 6 -1.3957 3.8747 -2.5340 19 6 -1.7086 4.7044 -3.7809 20 6 -1.3438 3.9369 -5.0178 21 6 -1.9232 4.3961 -6.3310 22 6 -0.5629 2.9046 -5.0268 23 6 -0.2814 2.2431 -6.3512 24 6 0.0793 2.3253 -3.8003 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 5.8770 0.4822 2.1129 31 1 2.2718 2.1232 -1.9977 32 1 2.0126 4.1025 -3.0444 33 1 0.7080 4.9762 -3.8825 34 1 0.9602 5.2145 -2.1365 35 1 -2.0943 3.0409 -2.4642 36 1 -1.4788 4.5015 -1.6462 37 1 -1.1374 5.6322 -3.7499 38 1 -2.7735 4.9363 -3.8004 39 1 -1.6468 3.6923 -7.1160 40 1 -3.0093 4.4443 -6.2519 41 1 -1.5325 5.3841 -6.5748 42 1 0.4529 1.4496 -6.2122 43 1 -1.2036 1.8192 -6.7489 44 1 0.1100 2.9819 -7.0506 45 1 1.1164 2.0725 -4.0206 46 1 -0.4575 1.4236 -3.5055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935398903.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:07 Heat of formation + Delta-G solvation = -45.778067 kcal Electronic energy + Delta-G solvation = -23343.423178 eV Core-core repulsion = 20232.341366 eV Total energy + Delta-G solvation = -3111.081812 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.45947 -38.34453 -35.38936 -34.21172 -32.47500 -31.92898 -31.14489 -28.49213 -27.42060 -26.92134 -25.71897 -23.08245 -22.79189 -21.87847 -19.93208 -19.10528 -17.20121 -16.47063 -16.10986 -15.64634 -15.15626 -14.83376 -14.73294 -14.32015 -14.16398 -13.81886 -13.30438 -13.27942 -12.81799 -12.74669 -12.53646 -12.20212 -12.10149 -11.97167 -11.78568 -11.73614 -11.71170 -11.66036 -11.33944 -11.08968 -10.85989 -10.74866 -10.57479 -10.52310 -10.14790 -9.90317 -9.51779 -9.19935 -8.88151 -8.72974 -8.52890 -7.99877 -6.19696 -4.21733 2.15266 3.24143 3.31934 3.36376 3.41876 3.99470 4.33003 4.58743 4.65803 4.94259 5.05047 5.14293 5.18367 5.23527 5.28102 5.38672 5.46394 5.48567 5.53690 5.63427 5.71092 5.75874 5.84495 5.87876 5.93510 5.95431 5.99064 6.03355 6.04558 6.09122 6.18938 6.24079 6.32503 6.44962 6.66001 6.68762 6.72503 6.88088 6.98845 7.04586 7.30690 7.35466 7.55883 8.19570 8.58645 8.78457 9.02428 9.41931 10.92442 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.029163 B = 0.004578 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.874692 B = 6114.619681 C = 6263.758630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.242 3.758 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.079 0.921 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.260 1.260 13 N -0.699 5.699 14 C 0.513 3.487 15 O -0.550 6.550 16 C -0.078 4.078 17 C -0.139 4.139 18 C -0.091 4.091 19 C -0.080 4.080 20 C -0.133 4.133 21 C -0.127 4.127 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.068 4.068 25 H 0.052 0.948 26 H 0.030 0.970 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.267 0.733 31 H 0.393 0.607 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.474 5.107 -14.524 19.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C 0.138 3.862 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.097 0.903 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.346 5.346 14 C 0.298 3.702 15 O -0.429 6.429 16 C -0.081 4.081 17 C -0.197 4.197 18 C -0.129 4.129 19 C -0.117 4.117 20 C -0.133 4.133 21 C -0.184 4.184 22 C -0.120 4.120 23 C -0.175 4.175 24 C -0.105 4.105 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.227 0.773 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.839 5.019 -13.731 19.457 hybrid contribution -0.011 -0.570 0.423 0.709 sum -12.850 4.449 -13.309 19.027 Atomic orbital electron populations 1.21874 0.96985 0.98917 1.02276 1.22278 0.94317 1.00048 1.00995 1.19131 0.95524 0.88452 0.83085 0.93433 1.21062 0.88690 1.39633 1.07757 0.90261 1.24834 0.94843 0.95171 0.97659 1.69875 1.08682 1.44616 1.29834 0.86903 0.80983 0.79943 0.80899 1.20281 1.22219 1.18486 1.46161 1.14949 1.55805 1.17710 1.20281 0.82361 0.78759 0.88788 1.90647 1.51639 1.59991 1.40629 1.20841 0.97411 0.96418 0.93478 1.21873 0.98445 0.97290 1.02070 1.21399 0.94231 0.99920 0.97363 1.20410 1.00983 0.98278 0.92061 1.20643 0.99417 0.97400 0.95870 1.21071 1.00501 1.01490 0.95303 1.20613 0.98876 0.96958 0.95572 1.20944 1.01496 1.00240 0.94846 1.20427 1.01026 0.97524 0.91532 0.92927 0.95085 0.92898 0.92882 0.92374 0.92335 0.77350 0.91988 0.91446 0.92202 0.91462 0.90758 0.90824 0.91320 0.91376 0.92156 0.92025 0.92146 0.91844 0.91720 0.90412 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.51 37.16 0.32 -2.60 16 2 C -0.14 -3.08 5.11 -26.73 -0.14 -3.21 16 3 C 0.24 5.73 1.83 -69.08 -0.13 5.60 16 4 H 0.05 1.26 6.64 -51.93 -0.34 0.91 16 5 C -0.53 -14.40 9.31 -34.44 -0.32 -14.72 16 6 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 8 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 9 Si 0.88 21.91 24.41 -169.99 -4.15 17.76 16 10 H -0.28 -6.64 6.83 56.52 0.39 -6.25 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 13 N -0.70 -13.74 4.83 -54.92 -0.27 -14.01 16 14 C 0.51 9.50 5.04 -10.98 -0.06 9.45 16 15 O -0.55 -11.98 13.03 5.55 0.07 -11.91 16 16 C -0.08 -1.10 0.63 -155.44 -0.10 -1.20 16 17 C -0.14 -1.78 7.73 37.16 0.29 -1.50 16 18 C -0.09 -1.22 4.34 -26.52 -0.12 -1.33 16 19 C -0.08 -0.85 5.18 -28.19 -0.15 -1.00 16 20 C -0.13 -1.38 5.19 -100.94 -0.52 -1.90 16 21 C -0.13 -1.05 9.62 36.01 0.35 -0.70 16 22 C -0.12 -1.31 5.44 -100.94 -0.55 -1.86 16 23 C -0.12 -1.06 8.35 36.00 0.30 -0.76 16 24 C -0.07 -0.85 4.28 -28.18 -0.12 -0.97 16 25 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 26 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 27 H 0.05 1.05 5.64 -51.93 -0.29 0.76 16 28 H 0.05 1.25 3.21 -51.93 -0.17 1.08 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.39 6.97 7.66 -40.82 -0.31 6.66 16 32 H 0.06 0.79 7.61 -51.93 -0.39 0.40 16 33 H 0.07 0.76 5.72 -51.93 -0.30 0.46 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.96 8.12 -51.93 -0.42 0.53 16 36 H 0.07 1.07 7.89 -51.93 -0.41 0.66 16 37 H 0.07 0.74 6.94 -51.93 -0.36 0.38 16 38 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 39 H 0.07 0.51 5.22 -51.93 -0.27 0.24 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.53 7.93 -51.93 -0.41 0.12 16 43 H 0.06 0.52 7.66 -51.92 -0.40 0.12 16 44 H 0.06 0.52 7.36 -51.93 -0.38 0.14 16 45 H 0.08 0.93 7.86 -51.93 -0.41 0.52 16 46 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 339.25 15.07 5.11 5.11 Total: -1.00 -30.34 339.25 -7.33 -37.68 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -7.84 Total: 5.70 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -1.04 Total: -14.60 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.51 Total: -39.74 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.07 Total: -11.91 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.15 Total: 17.76 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.34 -7.33 -37.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935398903.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.102 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds