Wall clock time and date at job start Tue Mar 31 2020 02:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46811 * 2 1 4 4 H 1.09004 * 109.46899 * 55.00085 * 3 2 1 5 5 C 1.50701 * 109.46846 * 174.99909 * 3 2 1 6 6 H 1.07998 * 119.99868 * 120.00298 * 5 3 2 7 7 C 1.37874 * 119.99838 * 299.99752 * 5 3 2 8 8 N 1.31523 * 119.99592 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 120.00453 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47074 * 89.99890 * 9 7 5 11 11 H 1.48498 * 109.47115 * 209.99817 * 9 7 5 12 12 H 1.48500 * 109.46768 * 329.99537 * 9 7 5 13 13 N 1.46500 * 109.46966 * 294.99924 * 3 2 1 14 14 C 1.34774 * 119.99700 * 85.00148 * 13 3 2 15 15 O 1.21284 * 120.00405 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99628 * 179.97438 * 14 13 3 17 17 C 1.52996 * 109.64007 * 299.57744 * 16 14 13 18 18 C 1.53400 * 109.63995 * 178.94572 * 16 14 13 19 19 C 1.53006 * 108.44573 * 172.89586 * 18 16 14 20 20 C 1.50067 * 110.16064 * 49.40393 * 19 18 16 21 21 C 1.50699 * 117.96487 * 162.87894 * 20 19 18 22 22 C 1.29442 * 124.07103 * 342.91090 * 20 19 18 23 23 C 1.50698 * 117.96058 * 180.42518 * 22 20 19 24 24 C 1.50071 * 124.07977 * 0.43635 * 22 20 19 25 25 H 1.09000 * 109.47296 * 299.99645 * 1 2 3 26 26 H 1.09009 * 109.46751 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47576 * 60.00341 * 1 2 3 28 28 H 1.08999 * 109.47576 * 119.99659 * 2 1 3 29 29 H 1.09000 * 109.47296 * 240.00355 * 2 1 3 30 30 H 0.96998 * 119.99591 * 180.02562 * 8 7 5 31 31 H 0.96993 * 119.99547 * 264.99803 * 13 3 2 32 32 H 1.09004 * 109.46853 * 59.99908 * 17 16 14 33 33 H 1.09000 * 109.47070 * 179.97438 * 17 16 14 34 34 H 1.08997 * 109.47496 * 300.00021 * 17 16 14 35 35 H 1.09000 * 109.63867 * 292.56504 * 18 16 14 36 36 H 1.08995 * 109.64304 * 53.19403 * 18 16 14 37 37 H 1.09000 * 109.34372 * 289.19939 * 19 18 16 38 38 H 1.09007 * 109.25181 * 169.55532 * 19 18 16 39 39 H 1.08999 * 109.47130 * 185.26352 * 21 20 19 40 40 H 1.09000 * 109.47221 * 305.27512 * 21 20 19 41 41 H 1.09007 * 109.46897 * 65.27127 * 21 20 19 42 42 H 1.09002 * 109.47245 * 175.15581 * 23 22 20 43 43 H 1.09009 * 109.46802 * 295.15280 * 23 22 20 44 44 H 1.09000 * 109.47818 * 55.14983 * 23 22 20 45 45 H 1.08994 * 109.36242 * 222.66740 * 24 22 20 46 46 H 1.09000 * 109.24475 * 103.00868 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1431 0.8786 1.2280 8 7 5.4539 0.8806 1.3363 9 14 3.0963 0.1090 2.5702 10 1 2.8755 -1.3271 2.2635 11 1 3.7936 0.2350 3.8752 12 1 1.7876 0.8075 2.6387 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6643 -1.3669 15 8 -0.3398 2.6319 -0.4344 16 6 0.0365 3.3386 -2.6545 17 6 0.9984 4.4909 -2.9507 18 6 -1.3957 3.8747 -2.5340 19 6 -1.7086 4.7044 -3.7809 20 6 -1.3438 3.9369 -5.0178 21 6 -1.9232 4.3961 -6.3310 22 6 -0.5629 2.9046 -5.0268 23 6 -0.2814 2.2431 -6.3512 24 6 0.0793 2.3253 -3.8003 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 5.8770 0.4822 2.1129 31 1 2.2718 2.1232 -1.9977 32 1 2.0126 4.1025 -3.0444 33 1 0.7080 4.9762 -3.8825 34 1 0.9602 5.2145 -2.1365 35 1 -2.0943 3.0409 -2.4642 36 1 -1.4788 4.5015 -1.6462 37 1 -1.1374 5.6322 -3.7499 38 1 -2.7735 4.9363 -3.8004 39 1 -1.6468 3.6923 -7.1160 40 1 -3.0093 4.4443 -6.2519 41 1 -1.5325 5.3841 -6.5748 42 1 0.4529 1.4496 -6.2122 43 1 -1.2036 1.8192 -6.7489 44 1 0.1100 2.9819 -7.0506 45 1 1.1164 2.0725 -4.0206 46 1 -0.4575 1.4236 -3.5055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935398903.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:07 Heat of formation + Delta-G solvation = -63.933697 kcal Electronic energy + Delta-G solvation = -23344.210465 eV Core-core repulsion = 20232.341366 eV Total energy + Delta-G solvation = -3111.869099 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.71063 -39.62760 -37.12309 -35.30827 -34.39276 -33.32739 -32.43689 -29.66853 -29.07632 -27.77924 -26.70601 -24.72332 -23.97120 -23.28655 -21.61406 -20.57667 -18.90819 -17.78597 -17.44688 -17.34124 -16.51575 -16.19641 -15.69273 -15.52803 -15.37332 -15.18689 -14.96285 -14.44973 -14.30263 -13.85531 -13.77751 -13.56270 -13.47587 -13.25265 -13.03528 -12.93426 -12.85776 -12.75461 -12.60204 -12.39613 -12.36171 -12.34028 -11.87248 -11.74857 -11.54645 -11.39422 -11.23022 -11.10255 -10.86474 -10.39471 -9.73508 -9.32000 -8.38880 -6.43936 1.25235 1.33567 1.35526 1.43450 1.81850 2.24937 2.49182 2.96971 3.56471 3.67455 3.86410 4.13299 4.14472 4.22186 4.29092 4.31076 4.35247 4.46263 4.52111 4.57758 4.65687 4.76890 4.81245 4.86360 4.89564 4.93831 4.95772 4.98595 4.99753 5.05670 5.10859 5.14476 5.19807 5.22621 5.23757 5.28635 5.31826 5.41104 5.41800 5.50662 5.69106 5.86058 6.14842 6.24628 6.57980 6.91796 7.19619 7.50008 8.76353 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.029163 B = 0.004578 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.874692 B = 6114.619681 C = 6263.758630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.136 4.136 3 C 0.249 3.751 4 H 0.019 0.981 5 C -0.532 4.532 6 H 0.056 0.944 7 C 0.031 3.969 8 N -0.933 5.933 9 Si 0.935 3.065 10 H -0.259 1.259 11 H -0.293 1.293 12 H -0.263 1.263 13 N -0.698 5.698 14 C 0.511 3.489 15 O -0.583 6.583 16 C -0.070 4.070 17 C -0.135 4.135 18 C -0.089 4.089 19 C -0.077 4.077 20 C -0.133 4.133 21 C -0.126 4.126 22 C -0.133 4.133 23 C -0.116 4.116 24 C -0.065 4.065 25 H 0.034 0.966 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.270 0.730 31 H 0.403 0.597 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.027 5.141 -16.420 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.175 4.175 3 C 0.144 3.856 4 H 0.037 0.963 5 C -0.570 4.570 6 H 0.074 0.926 7 C -0.169 4.169 8 N -0.572 5.572 9 Si 0.763 3.237 10 H -0.185 1.185 11 H -0.220 1.220 12 H -0.188 1.188 13 N -0.346 5.346 14 C 0.299 3.701 15 O -0.464 6.464 16 C -0.073 4.073 17 C -0.193 4.193 18 C -0.127 4.127 19 C -0.113 4.113 20 C -0.133 4.133 21 C -0.182 4.182 22 C -0.133 4.133 23 C -0.172 4.172 24 C -0.102 4.102 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.238 0.762 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.398 5.057 -15.660 21.866 hybrid contribution 0.474 -0.509 0.999 1.217 sum -13.924 4.548 -14.660 20.724 Atomic orbital electron populations 1.21754 0.95313 1.00455 1.01493 1.22194 0.95737 0.98548 1.00972 1.18771 0.93173 0.89622 0.84038 0.96312 1.21286 0.90342 1.38461 1.06905 0.92587 1.25522 0.95693 0.95887 0.99764 1.69978 1.10204 1.46181 1.30856 0.86050 0.79242 0.79967 0.78444 1.18515 1.22031 1.18767 1.46018 1.15875 1.56031 1.16710 1.21088 0.81239 0.77816 0.89998 1.90628 1.52422 1.61059 1.42314 1.20821 0.98127 0.96916 0.91449 1.21866 0.98027 0.96569 1.02812 1.21367 0.93322 0.99637 0.98410 1.20406 1.02119 0.98068 0.90732 1.20831 0.98829 0.96970 0.96643 1.21091 1.00842 1.02164 0.94092 1.20633 0.99489 0.97645 0.95529 1.20940 1.01948 1.00391 0.93923 1.20384 1.01498 0.96608 0.91692 0.94637 0.92307 0.92773 0.93893 0.91299 0.92097 0.76211 0.92106 0.89185 0.93068 0.92706 0.92336 0.89837 0.89902 0.90504 0.91447 0.91044 0.92360 0.90988 0.90501 0.89984 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.25 8.51 71.98 0.61 -4.64 16 2 C -0.14 -5.96 5.11 30.60 0.16 -5.80 16 3 C 0.25 11.91 1.83 44.25 0.08 11.99 16 4 H 0.02 1.02 6.64 -2.38 -0.02 1.01 16 5 C -0.53 -29.23 9.31 25.60 0.24 -28.99 16 6 H 0.06 3.27 7.98 -2.91 -0.02 3.25 16 7 C 0.03 1.77 5.45 84.65 0.46 2.23 16 8 N -0.93 -56.28 13.96 21.45 0.30 -55.98 16 9 Si 0.94 45.40 24.41 68.60 1.67 47.07 16 10 H -0.26 -11.83 6.83 99.48 0.68 -11.15 16 11 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 12 H -0.26 -12.78 6.53 99.48 0.65 -12.13 16 13 N -0.70 -27.60 4.83 -446.07 -2.15 -29.76 16 14 C 0.51 18.99 5.04 87.66 0.44 19.43 16 15 O -0.58 -25.76 13.03 -3.04 -0.04 -25.80 16 16 C -0.07 -1.92 0.63 -52.79 -0.03 -1.95 16 17 C -0.14 -3.29 7.73 71.98 0.56 -2.74 16 18 C -0.09 -2.31 4.34 30.73 0.13 -2.18 16 19 C -0.08 -1.44 5.18 29.65 0.15 -1.29 16 20 C -0.13 -2.36 5.19 -15.10 -0.08 -2.44 16 21 C -0.13 -1.62 9.62 71.24 0.69 -0.94 16 22 C -0.13 -2.57 5.44 -15.09 -0.08 -2.65 16 23 C -0.12 -1.74 8.35 71.24 0.59 -1.15 16 24 C -0.06 -1.53 4.28 29.66 0.13 -1.40 16 25 H 0.03 1.50 7.85 -2.39 -0.02 1.48 16 26 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 27 H 0.05 2.10 5.64 -2.39 -0.01 2.09 16 28 H 0.04 1.97 3.21 -2.39 -0.01 1.96 16 29 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.40 14.30 7.66 -92.71 -0.71 13.59 16 32 H 0.06 1.49 7.61 -2.38 -0.02 1.47 16 33 H 0.09 1.79 5.72 -2.39 -0.01 1.78 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.05 1.54 8.12 -2.39 -0.02 1.52 16 36 H 0.06 1.68 7.89 -2.39 -0.02 1.66 16 37 H 0.08 1.44 6.94 -2.39 -0.02 1.42 16 38 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.08 0.87 5.22 -2.39 -0.01 0.86 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.06 0.90 7.93 -2.39 -0.02 0.88 16 43 H 0.07 0.97 7.66 -2.38 -0.02 0.95 16 44 H 0.08 0.98 7.36 -2.39 -0.02 0.96 16 45 H 0.08 1.84 7.86 -2.39 -0.02 1.82 16 46 H 0.06 1.66 8.10 -2.39 -0.02 1.64 16 Total: -1.00 -65.71 339.25 4.00 -61.71 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.17 Total: 25.26 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: 4.05 Total: -22.51 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -1.85 Total: -85.74 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.04 Total: -25.80 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.67 Total: 47.07 kcal Total: -65.71 4.00 -61.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935398903.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.223 kcal (2) G-P(sol) polarization free energy of solvation -65.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds