Wall clock time and date at job start Tue Mar 31 2020 02:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47324 * 2 1 4 4 H 1.08993 * 109.47324 * 305.00106 * 3 2 1 5 5 C 1.50700 * 109.46997 * 184.99512 * 3 2 1 6 6 H 1.07998 * 120.00112 * 239.99685 * 5 3 2 7 7 C 1.37881 * 119.99993 * 60.00443 * 5 3 2 8 8 N 1.31512 * 119.99667 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00243 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47245 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.47162 * 300.00407 * 9 7 5 12 12 H 1.48503 * 109.47075 * 59.99703 * 9 7 5 13 13 N 1.46508 * 109.47248 * 65.00104 * 3 2 1 14 14 C 1.34775 * 119.99431 * 275.00358 * 13 3 2 15 15 O 1.21286 * 120.00332 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99852 * 179.97438 * 14 13 3 17 17 C 1.52999 * 109.64055 * 294.16620 * 16 14 13 18 18 C 1.53392 * 109.64370 * 54.80095 * 16 14 13 19 19 C 1.53015 * 108.45045 * 52.26362 * 18 16 14 20 20 C 1.50072 * 110.15172 * 49.40641 * 19 18 16 21 21 C 1.50707 * 117.95980 * 162.88297 * 20 19 18 22 22 C 1.29440 * 124.07625 * 342.91217 * 20 19 18 23 23 C 1.50697 * 117.96114 * 180.42540 * 22 20 19 24 24 C 1.50069 * 124.07550 * 0.43736 * 22 20 19 25 25 H 1.09003 * 109.46781 * 60.00166 * 1 2 3 26 26 H 1.08997 * 109.47520 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47194 * 300.00344 * 1 2 3 28 28 H 1.09002 * 109.47194 * 239.99655 * 2 1 3 29 29 H 1.09003 * 109.46781 * 119.99834 * 2 1 3 30 30 H 0.97004 * 119.99872 * 180.02562 * 8 7 5 31 31 H 0.96993 * 120.00086 * 94.99690 * 13 3 2 32 32 H 1.09002 * 109.46947 * 60.00138 * 17 16 14 33 33 H 1.08998 * 109.47127 * 179.97438 * 17 16 14 34 34 H 1.08999 * 109.47038 * 300.00014 * 17 16 14 35 35 H 1.09000 * 109.64849 * 171.93351 * 18 16 14 36 36 H 1.08997 * 109.64519 * 292.56526 * 18 16 14 37 37 H 1.08998 * 109.33818 * 289.20705 * 19 18 16 38 38 H 1.08999 * 109.36590 * 169.62546 * 19 18 16 39 39 H 1.08993 * 109.46712 * 185.05583 * 21 20 19 40 40 H 1.08998 * 109.47026 * 305.05902 * 21 20 19 41 41 H 1.09005 * 109.46707 * 65.05779 * 21 20 19 42 42 H 1.09005 * 109.47430 * 179.46636 * 23 22 20 43 43 H 1.08998 * 109.47264 * 299.46362 * 23 22 20 44 44 H 1.09001 * 109.47598 * 59.46086 * 23 22 20 45 45 H 1.08994 * 109.35790 * 222.66433 * 24 22 20 46 46 H 1.09004 * 109.23862 * 103.01128 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4441 -0.1237 6 1 4.1472 1.8887 0.6524 7 6 4.1434 0.8782 -1.2279 8 7 3.4063 0.3365 -2.1728 9 14 6.0050 0.8810 -1.3816 10 1 6.3979 0.2164 -2.6501 11 1 6.4996 2.2812 -1.3818 12 1 6.5974 0.1470 -0.2347 13 7 1.6525 2.0975 1.2519 14 6 0.4352 2.6643 1.3669 15 8 -0.3393 2.6326 0.4341 16 6 0.0362 3.3376 2.6548 17 6 -0.0625 2.2956 3.7707 18 6 1.0789 4.3998 3.0259 19 6 1.2838 5.3192 1.8201 20 6 -0.0421 5.7852 1.2940 21 6 -0.0583 6.9841 0.3810 22 6 -1.1728 5.2217 1.5759 23 6 -2.4224 5.7991 0.9625 24 6 -1.3168 4.0295 2.4759 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8294 -0.0619 -2.9494 31 1 2.2719 2.1231 1.9978 32 1 0.9045 1.8099 3.9009 33 1 -0.3507 2.7855 4.7008 34 1 -0.8113 1.5492 3.5056 35 1 0.7218 4.9831 3.8745 36 1 2.0210 3.9148 3.2813 37 1 1.8123 4.7754 1.0372 38 1 1.8770 6.1829 2.1208 39 1 -1.0896 7.2551 0.1555 40 1 0.4385 7.8211 0.8716 41 1 0.4648 6.7430 -0.5445 42 1 -3.2867 5.2170 1.2825 43 1 -2.5412 6.8333 1.2853 44 1 -2.3432 5.7645 -0.1241 45 1 -2.0259 3.3283 2.0359 46 1 -1.6872 4.3558 3.4478 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935398904.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:11 Heat of formation + Delta-G solvation = -52.369543 kcal Electronic energy + Delta-G solvation = -23782.863307 eV Core-core repulsion = 20671.495668 eV Total energy + Delta-G solvation = -3111.367639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.33752 -37.62035 -34.97319 -34.34445 -32.26203 -31.64638 -30.67922 -28.71743 -27.01790 -26.59285 -24.49860 -23.35012 -22.56526 -22.03291 -19.65184 -18.81817 -17.37629 -16.05329 -15.58343 -15.24050 -14.82674 -14.68678 -14.59556 -14.05650 -13.94843 -13.48819 -13.15390 -12.66198 -12.64224 -12.41630 -12.29970 -12.03002 -11.91272 -11.73333 -11.54437 -11.46813 -11.35253 -11.32089 -11.18540 -11.01041 -10.95002 -10.78411 -10.28441 -10.15327 -10.09907 -9.87373 -9.57481 -8.99988 -8.68625 -8.44020 -8.15615 -7.67359 -6.08791 -4.17850 2.55247 3.26522 3.32067 3.33029 3.60191 4.18358 4.42274 4.74507 4.88325 5.05994 5.22310 5.23441 5.36887 5.47965 5.56575 5.63283 5.68128 5.70893 5.78012 5.81207 5.88183 5.92720 6.00978 6.07793 6.10097 6.16718 6.21321 6.30445 6.37689 6.40555 6.43514 6.47701 6.51024 6.71833 6.97889 7.09309 7.25836 7.40902 7.43427 7.57518 7.67125 7.80824 7.96748 8.23802 8.78761 8.85614 9.29248 9.50853 10.96404 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.005692 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.662845 B = 4917.617404 C = 5323.726223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.047 0.953 5 C -0.532 4.532 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.899 3.101 10 H -0.286 1.286 11 H -0.277 1.277 12 H -0.277 1.277 13 N -0.710 5.710 14 C 0.517 3.483 15 O -0.542 6.542 16 C -0.086 4.086 17 C -0.137 4.137 18 C -0.103 4.103 19 C -0.086 4.086 20 C -0.132 4.132 21 C -0.125 4.125 22 C -0.113 4.113 23 C -0.112 4.112 24 C -0.053 4.053 25 H 0.048 0.952 26 H 0.020 0.980 27 H 0.039 0.961 28 H 0.097 0.903 29 H 0.029 0.971 30 H 0.264 0.736 31 H 0.385 0.615 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.702 8.516 10.709 15.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.065 0.935 5 C -0.571 4.571 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.726 3.274 10 H -0.212 1.212 11 H -0.202 1.202 12 H -0.202 1.202 13 N -0.357 5.357 14 C 0.302 3.698 15 O -0.420 6.420 16 C -0.089 4.089 17 C -0.195 4.195 18 C -0.140 4.140 19 C -0.123 4.123 20 C -0.132 4.132 21 C -0.181 4.181 22 C -0.113 4.113 23 C -0.169 4.169 24 C -0.091 4.091 25 H 0.068 0.932 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.115 0.885 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.217 0.783 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.234 8.382 9.806 14.790 hybrid contribution 1.402 -0.110 0.160 1.416 sum -5.832 8.273 9.966 14.205 Atomic orbital electron populations 1.21829 0.98421 0.97821 1.01242 1.21924 0.92557 1.00025 1.02063 1.18698 0.93912 0.89026 0.81269 0.93540 1.21207 0.90888 1.38842 1.06116 0.92291 1.24875 0.98408 0.94907 0.95450 1.69889 1.35116 1.37657 1.09362 0.86557 0.85139 0.78264 0.77415 1.21181 1.20241 1.20211 1.46449 1.14785 1.56328 1.18184 1.20006 0.82610 0.78692 0.88516 1.90646 1.51517 1.59614 1.40265 1.20954 0.96989 0.95875 0.95079 1.21788 1.02610 0.98101 0.96952 1.21622 0.98218 0.96233 0.97965 1.20386 0.95137 0.98949 0.97827 1.20501 0.94378 0.98284 1.00066 1.21032 1.02408 0.95863 0.98821 1.20450 0.94568 0.96771 0.99511 1.20868 0.95766 0.99635 1.00638 1.20215 0.95885 0.94944 0.98012 0.93249 0.96086 0.94216 0.88482 0.95214 0.92595 0.78331 0.91966 0.92074 0.92186 0.91379 0.91236 0.90041 0.91453 0.91583 0.92527 0.91886 0.92672 0.92294 0.91766 0.90245 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.52 37.16 0.32 -2.76 16 2 C -0.13 -3.11 5.45 -26.74 -0.15 -3.25 16 3 C 0.27 6.84 2.24 -69.08 -0.15 6.68 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.97 16 5 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.86 11.29 55.43 0.63 -24.23 16 9 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 13 N -0.71 -14.54 4.78 -54.93 -0.26 -14.80 16 14 C 0.52 10.05 3.30 -10.99 -0.04 10.01 16 15 O -0.54 -12.49 12.46 5.55 0.07 -12.42 16 16 C -0.09 -1.26 0.66 -155.45 -0.10 -1.37 16 17 C -0.14 -1.71 8.46 37.16 0.31 -1.40 16 18 C -0.10 -1.35 4.72 -26.52 -0.13 -1.48 16 19 C -0.09 -1.28 5.29 -28.18 -0.15 -1.43 16 20 C -0.13 -1.99 5.65 -100.93 -0.57 -2.56 16 21 C -0.12 -1.64 9.65 36.01 0.35 -1.30 16 22 C -0.11 -1.67 5.11 -100.94 -0.52 -2.19 16 23 C -0.11 -1.44 8.34 36.00 0.30 -1.14 16 24 C -0.05 -0.76 4.11 -28.18 -0.12 -0.88 16 25 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.04 0.87 5.65 -51.93 -0.29 0.57 16 28 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.38 7.04 7.70 -40.82 -0.31 6.73 16 32 H 0.06 0.76 8.01 -51.93 -0.42 0.34 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.78 8.12 -51.93 -0.42 0.35 16 36 H 0.07 0.86 7.56 -51.93 -0.39 0.47 16 37 H 0.08 1.46 7.34 -51.93 -0.38 1.08 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.79 5.20 -51.93 -0.27 0.52 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.65 7.93 -51.93 -0.41 0.24 16 43 H 0.06 0.64 7.43 -51.93 -0.39 0.25 16 44 H 0.06 0.87 7.61 -51.93 -0.40 0.48 16 45 H 0.08 1.25 7.67 -51.93 -0.40 0.85 16 46 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 LS Contribution 347.63 15.07 5.24 5.24 Total: -1.00 -29.48 347.63 -8.49 -37.97 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -8.11 Total: 8.25 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -1.03 Total: -15.64 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.36 Total: -39.04 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.07 Total: -12.42 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.48 -8.49 -37.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935398904.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.401 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds