Wall clock time and date at job start Tue Mar 31 2020 02:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46958 * 2 1 4 4 H 1.08992 * 109.47168 * 304.99537 * 3 2 1 5 5 C 1.50711 * 109.46909 * 184.99647 * 3 2 1 6 6 H 1.07995 * 119.99503 * 239.99876 * 5 3 2 7 7 C 1.37875 * 119.99709 * 60.00068 * 5 3 2 8 8 N 1.31513 * 120.00003 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99691 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47295 * 90.00022 * 9 7 5 11 11 H 1.48497 * 109.47580 * 210.00253 * 9 7 5 12 12 H 1.48506 * 109.47458 * 330.00204 * 9 7 5 13 13 N 1.46503 * 109.47169 * 65.00131 * 3 2 1 14 14 C 1.34777 * 119.99488 * 274.99823 * 13 3 2 15 15 O 1.21283 * 120.00085 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99852 * 179.97438 * 14 13 3 17 17 C 1.52993 * 109.81353 * 299.47358 * 16 14 13 18 18 C 1.53392 * 109.64316 * 178.94189 * 16 14 13 19 19 C 1.53020 * 108.43767 * 172.88114 * 18 16 14 20 20 C 1.50062 * 110.14863 * 49.43866 * 19 18 16 21 21 C 1.50699 * 117.96705 * 162.86553 * 20 19 18 22 22 C 1.29445 * 124.07609 * 342.86851 * 20 19 18 23 23 C 1.50696 * 117.96534 * 180.49161 * 22 20 19 24 24 C 1.50072 * 124.07465 * 0.46821 * 22 20 19 25 25 H 1.08996 * 109.47655 * 300.00013 * 1 2 3 26 26 H 1.09001 * 109.46974 * 60.00337 * 1 2 3 27 27 H 1.09004 * 109.46940 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47655 * 239.99987 * 2 1 3 29 29 H 1.09001 * 109.46974 * 119.99662 * 2 1 3 30 30 H 0.97001 * 119.99195 * 180.02562 * 8 7 5 31 31 H 0.96996 * 120.00211 * 94.99468 * 13 3 2 32 32 H 1.08998 * 109.47457 * 180.52533 * 17 16 14 33 33 H 1.08999 * 109.47431 * 300.52840 * 17 16 14 34 34 H 1.09000 * 109.47493 * 60.52528 * 17 16 14 35 35 H 1.08999 * 109.64670 * 292.57106 * 18 16 14 36 36 H 1.09002 * 109.63942 * 52.98885 * 18 16 14 37 37 H 1.09002 * 109.35760 * 169.64841 * 19 18 16 38 38 H 1.09000 * 109.35759 * 289.36791 * 19 18 16 39 39 H 1.09000 * 109.46892 * 89.99523 * 21 20 19 40 40 H 1.08997 * 109.47480 * 210.00297 * 21 20 19 41 41 H 1.09000 * 109.46691 * 330.00806 * 21 20 19 42 42 H 1.09001 * 109.47100 * 269.98184 * 23 22 20 43 43 H 1.08996 * 109.47373 * 29.97445 * 23 22 20 44 44 H 1.08993 * 109.47435 * 149.98101 * 23 22 20 45 45 H 1.09000 * 109.35750 * 222.66210 * 24 22 20 46 46 H 1.09002 * 109.35438 * 103.07648 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1471 1.8889 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3375 -2.1732 9 14 6.0049 0.8812 -1.3816 10 1 6.5549 -0.3502 -0.7599 11 1 6.3831 0.9224 -2.8170 12 1 6.5570 2.0738 -0.6899 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3393 2.6327 0.4340 16 6 0.0361 3.3377 2.6548 17 6 0.0642 2.3239 3.8003 18 6 -1.3762 3.9201 2.5162 19 6 -1.8230 4.4370 3.8853 20 6 -0.7563 5.3074 4.4825 21 6 -1.1419 6.2185 5.6192 22 6 0.4745 5.3243 4.0819 23 6 1.4351 6.2455 4.7888 24 6 1.0044 4.4832 2.9577 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8294 -0.0610 -2.9498 31 1 2.2718 2.1231 1.9978 32 1 -0.2341 2.8143 4.7269 33 1 -0.6262 1.5093 3.5817 34 1 1.0731 1.9257 3.9085 35 1 -1.3651 4.7417 1.8000 36 1 -2.0604 3.1441 2.1729 37 1 -2.7397 5.0157 3.7715 38 1 -2.0094 3.5916 4.5476 39 1 -1.0059 5.6958 6.5660 40 1 -0.5123 7.1081 5.6015 41 1 -2.1867 6.5105 5.5124 42 1 1.4397 7.2159 4.2924 43 1 1.1232 6.3694 5.8258 44 1 2.4371 5.8176 4.7594 45 1 1.9736 4.0720 3.2400 46 1 1.1219 5.1019 2.0680 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935398905.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:15 Heat of formation + Delta-G solvation = -54.085839 kcal Electronic energy + Delta-G solvation = -23232.004017 eV Core-core repulsion = 20120.561953 eV Total energy + Delta-G solvation = -3111.442064 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.33908 -38.17039 -35.10804 -34.11233 -32.45166 -31.74900 -30.65847 -28.46556 -26.94568 -26.76965 -25.65574 -23.18718 -22.91187 -21.57865 -19.57290 -18.90582 -17.04654 -16.40719 -15.77893 -15.50582 -14.86413 -14.75647 -14.70199 -14.21587 -14.11824 -13.75959 -13.27444 -12.80217 -12.70962 -12.61598 -12.51151 -12.09884 -11.89692 -11.76343 -11.70583 -11.60383 -11.45974 -11.24891 -11.20180 -10.97756 -10.80424 -10.66108 -10.48439 -10.29052 -10.12064 -10.05150 -9.59479 -9.00836 -8.74244 -8.47757 -8.46416 -7.74097 -6.10069 -4.19248 2.20366 3.24963 3.32073 3.34004 3.49767 4.13611 4.39470 4.65780 4.73972 5.01113 5.11741 5.21074 5.25385 5.29641 5.34393 5.43885 5.51929 5.56629 5.60844 5.68171 5.76393 5.82924 5.87385 5.93869 5.99910 6.00563 6.09389 6.15279 6.27196 6.38781 6.42269 6.49868 6.52166 6.70094 6.72767 7.07942 7.09969 7.23884 7.41355 7.53078 7.65477 7.78036 7.94389 8.21822 8.74815 8.82151 9.22750 9.48765 10.95202 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023282 B = 0.004717 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.359864 B = 5935.068274 C = 6780.850530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.706 5.706 14 C 0.511 3.489 15 O -0.549 6.549 16 C -0.079 4.079 17 C -0.138 4.138 18 C -0.092 4.092 19 C -0.080 4.080 20 C -0.135 4.135 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.068 4.068 25 H 0.039 0.961 26 H 0.049 0.951 27 H 0.021 0.979 28 H 0.098 0.902 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.386 0.614 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.395 8.222 14.887 18.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.354 5.354 14 C 0.296 3.704 15 O -0.428 6.428 16 C -0.082 4.082 17 C -0.195 4.195 18 C -0.129 4.129 19 C -0.117 4.117 20 C -0.135 4.135 21 C -0.178 4.178 22 C -0.119 4.119 23 C -0.180 4.180 24 C -0.105 4.105 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.116 0.884 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.218 0.782 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.906 8.095 14.004 17.587 hybrid contribution 1.380 -0.077 0.196 1.396 sum -5.525 8.017 14.200 17.217 Atomic orbital electron populations 1.21836 0.98401 0.97911 1.01254 1.21923 0.92580 0.99907 1.02147 1.18758 0.94069 0.89144 0.81224 0.93430 1.21242 0.90819 1.38863 1.06187 0.92188 1.24879 0.98490 0.94883 0.95406 1.69900 1.35043 1.37683 1.09352 0.86482 0.85049 0.78409 0.77354 1.20583 1.21104 1.19895 1.46479 1.14701 1.55911 1.18273 1.20190 0.82639 0.79023 0.88546 1.90650 1.51565 1.60086 1.40493 1.20847 0.97049 0.95733 0.94617 1.21856 1.02326 0.98062 0.97259 1.21394 0.94653 1.00801 0.96092 1.20435 0.96598 0.98170 0.96463 1.20649 0.94618 0.99450 0.98735 1.20998 1.01425 0.98563 0.96793 1.20624 0.94585 0.98843 0.97896 1.21018 0.98591 0.98594 0.99795 1.20396 0.97986 0.95072 0.97048 0.94209 0.93222 0.95988 0.88400 0.95147 0.92623 0.78154 0.91527 0.92366 0.92270 0.91456 0.90813 0.91344 0.90922 0.91953 0.91706 0.92386 0.91779 0.91676 0.92010 0.90569 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.16 0.32 -2.78 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.80 2.24 -69.07 -0.15 6.64 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.05 8.73 -34.44 -0.30 -14.35 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.80 11.29 55.43 0.63 -24.17 16 9 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.71 -14.58 4.84 -54.93 -0.27 -14.85 16 14 C 0.51 10.06 5.04 -10.98 -0.06 10.01 16 15 O -0.55 -12.80 13.03 5.55 0.07 -12.72 16 16 C -0.08 -1.18 0.63 -155.45 -0.10 -1.28 16 17 C -0.14 -1.79 7.74 37.15 0.29 -1.50 16 18 C -0.09 -1.30 4.34 -26.52 -0.12 -1.41 16 19 C -0.08 -0.89 5.16 -28.18 -0.15 -1.04 16 20 C -0.13 -1.47 5.18 -100.94 -0.52 -1.99 16 21 C -0.12 -1.05 8.82 36.01 0.32 -0.73 16 22 C -0.12 -1.38 5.44 -100.94 -0.55 -1.93 16 23 C -0.12 -1.18 8.82 36.00 0.32 -0.87 16 24 C -0.07 -0.92 4.38 -28.17 -0.12 -1.04 16 25 H 0.04 0.87 5.65 -51.93 -0.29 0.58 16 26 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.39 7.08 7.69 -40.82 -0.31 6.76 16 32 H 0.07 0.76 5.67 -51.93 -0.29 0.47 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.75 7.64 -51.93 -0.40 0.35 16 35 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 36 H 0.07 1.12 7.89 -51.93 -0.41 0.71 16 37 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 38 H 0.07 0.76 6.90 -51.93 -0.36 0.40 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.52 6.19 -51.93 -0.32 0.20 16 41 H 0.06 0.46 8.03 -51.93 -0.42 0.04 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.54 6.19 -51.93 -0.32 0.22 16 44 H 0.06 0.58 8.03 -51.93 -0.42 0.16 16 45 H 0.08 0.98 7.81 -51.93 -0.41 0.58 16 46 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 LS Contribution 345.93 15.07 5.21 5.21 Total: -1.00 -29.27 345.93 -8.42 -37.69 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -7.98 Total: 7.06 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -1.07 Total: -13.83 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.36 Total: -39.02 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.07 Total: -12.72 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.27 -8.42 -37.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935398905.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.398 kcal (2) G-P(sol) polarization free energy of solvation -29.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds