Wall clock time and date at job start Tue Mar 31 2020 02:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46958 * 2 1 4 4 H 1.08992 * 109.47168 * 304.99537 * 3 2 1 5 5 C 1.50711 * 109.46909 * 184.99647 * 3 2 1 6 6 H 1.07995 * 119.99503 * 239.99876 * 5 3 2 7 7 C 1.37875 * 119.99709 * 60.00068 * 5 3 2 8 8 N 1.31513 * 120.00003 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99691 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47295 * 90.00022 * 9 7 5 11 11 H 1.48497 * 109.47580 * 210.00253 * 9 7 5 12 12 H 1.48506 * 109.47458 * 330.00204 * 9 7 5 13 13 N 1.46503 * 109.47169 * 65.00131 * 3 2 1 14 14 C 1.34777 * 119.99488 * 274.99823 * 13 3 2 15 15 O 1.21283 * 120.00085 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99852 * 179.97438 * 14 13 3 17 17 C 1.52993 * 109.81353 * 299.47358 * 16 14 13 18 18 C 1.53392 * 109.64316 * 178.94189 * 16 14 13 19 19 C 1.53020 * 108.43767 * 172.88114 * 18 16 14 20 20 C 1.50062 * 110.14863 * 49.43866 * 19 18 16 21 21 C 1.50699 * 117.96705 * 162.86553 * 20 19 18 22 22 C 1.29445 * 124.07609 * 342.86851 * 20 19 18 23 23 C 1.50696 * 117.96534 * 180.49161 * 22 20 19 24 24 C 1.50072 * 124.07465 * 0.46821 * 22 20 19 25 25 H 1.08996 * 109.47655 * 300.00013 * 1 2 3 26 26 H 1.09001 * 109.46974 * 60.00337 * 1 2 3 27 27 H 1.09004 * 109.46940 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47655 * 239.99987 * 2 1 3 29 29 H 1.09001 * 109.46974 * 119.99662 * 2 1 3 30 30 H 0.97001 * 119.99195 * 180.02562 * 8 7 5 31 31 H 0.96996 * 120.00211 * 94.99468 * 13 3 2 32 32 H 1.08998 * 109.47457 * 180.52533 * 17 16 14 33 33 H 1.08999 * 109.47431 * 300.52840 * 17 16 14 34 34 H 1.09000 * 109.47493 * 60.52528 * 17 16 14 35 35 H 1.08999 * 109.64670 * 292.57106 * 18 16 14 36 36 H 1.09002 * 109.63942 * 52.98885 * 18 16 14 37 37 H 1.09002 * 109.35760 * 169.64841 * 19 18 16 38 38 H 1.09000 * 109.35759 * 289.36791 * 19 18 16 39 39 H 1.09000 * 109.46892 * 89.99523 * 21 20 19 40 40 H 1.08997 * 109.47480 * 210.00297 * 21 20 19 41 41 H 1.09000 * 109.46691 * 330.00806 * 21 20 19 42 42 H 1.09001 * 109.47100 * 269.98184 * 23 22 20 43 43 H 1.08996 * 109.47373 * 29.97445 * 23 22 20 44 44 H 1.08993 * 109.47435 * 149.98101 * 23 22 20 45 45 H 1.09000 * 109.35750 * 222.66210 * 24 22 20 46 46 H 1.09002 * 109.35438 * 103.07648 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1471 1.8889 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3375 -2.1732 9 14 6.0049 0.8812 -1.3816 10 1 6.5549 -0.3502 -0.7599 11 1 6.3831 0.9224 -2.8170 12 1 6.5570 2.0738 -0.6899 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3393 2.6327 0.4340 16 6 0.0361 3.3377 2.6548 17 6 0.0642 2.3239 3.8003 18 6 -1.3762 3.9201 2.5162 19 6 -1.8230 4.4370 3.8853 20 6 -0.7563 5.3074 4.4825 21 6 -1.1419 6.2185 5.6192 22 6 0.4745 5.3243 4.0819 23 6 1.4351 6.2455 4.7888 24 6 1.0044 4.4832 2.9577 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8294 -0.0610 -2.9498 31 1 2.2718 2.1231 1.9978 32 1 -0.2341 2.8143 4.7269 33 1 -0.6262 1.5093 3.5817 34 1 1.0731 1.9257 3.9085 35 1 -1.3651 4.7417 1.8000 36 1 -2.0604 3.1441 2.1729 37 1 -2.7397 5.0157 3.7715 38 1 -2.0094 3.5916 4.5476 39 1 -1.0059 5.6958 6.5660 40 1 -0.5123 7.1081 5.6015 41 1 -2.1867 6.5105 5.5124 42 1 1.4397 7.2159 4.2924 43 1 1.1232 6.3694 5.8258 44 1 2.4371 5.8176 4.7594 45 1 1.9736 4.0720 3.2400 46 1 1.1219 5.1019 2.0680 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935398905.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:14 Heat of formation + Delta-G solvation = -70.159290 kcal Electronic energy + Delta-G solvation = -23232.701014 eV Core-core repulsion = 20120.561953 eV Total energy + Delta-G solvation = -3112.139061 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.64737 -39.54886 -36.94194 -35.28219 -34.27176 -33.06403 -32.27388 -29.56446 -28.69452 -27.76350 -26.68561 -25.08006 -23.93888 -23.06296 -21.41440 -20.45564 -18.70211 -17.47138 -17.43954 -17.21034 -16.38568 -16.14635 -15.71779 -15.57175 -15.23491 -15.11300 -14.60524 -14.54193 -13.98330 -13.78261 -13.53488 -13.37608 -13.27429 -13.18357 -12.95111 -12.89450 -12.79333 -12.66452 -12.58202 -12.39485 -12.32805 -12.16178 -12.06098 -11.76895 -11.59060 -11.50990 -11.10946 -11.03195 -10.56752 -10.31973 -9.58939 -9.32803 -8.15891 -6.33321 1.34715 1.43993 1.44704 1.55042 1.90376 2.36483 2.67652 3.13398 3.58739 3.70786 3.88627 4.14041 4.18516 4.29662 4.36932 4.47890 4.51861 4.56526 4.58528 4.65250 4.75121 4.78971 4.86386 4.88365 4.94699 4.96848 4.98627 5.05506 5.06385 5.15319 5.19916 5.24079 5.26244 5.26335 5.32274 5.42778 5.44067 5.56554 5.65310 5.80025 5.85580 5.94614 6.17756 6.24201 6.75166 7.03519 7.34213 7.62912 8.89426 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023282 B = 0.004717 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.359864 B = 5935.068274 C = 6780.850530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.006 1.006 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.702 5.702 14 C 0.507 3.493 15 O -0.590 6.590 16 C -0.070 4.070 17 C -0.132 4.132 18 C -0.091 4.091 19 C -0.075 4.075 20 C -0.131 4.131 21 C -0.119 4.119 22 C -0.134 4.134 23 C -0.120 4.120 24 C -0.065 4.065 25 H 0.044 0.956 26 H 0.023 0.977 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.264 0.736 31 H 0.400 0.600 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.061 0.939 45 H 0.082 0.918 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.884 8.879 17.931 20.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.012 0.988 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.350 5.350 14 C 0.294 3.706 15 O -0.471 6.471 16 C -0.073 4.073 17 C -0.190 4.190 18 C -0.129 4.129 19 C -0.112 4.112 20 C -0.131 4.131 21 C -0.176 4.176 22 C -0.134 4.134 23 C -0.176 4.176 24 C -0.102 4.102 25 H 0.063 0.937 26 H 0.042 0.958 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.234 0.766 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.080 0.920 45 H 0.100 0.900 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.391 8.766 17.091 20.243 hybrid contribution 1.146 -0.267 -0.813 1.430 sum -5.245 8.499 16.278 19.097 Atomic orbital electron populations 1.21670 0.97069 0.99045 1.00192 1.21768 0.93673 0.99219 1.01201 1.18344 0.93584 0.89129 0.81498 0.98762 1.21575 0.91451 1.38862 1.06652 0.91177 1.25762 1.03268 0.94394 0.94991 1.70056 1.37032 1.38402 1.09878 0.85387 0.79188 0.78881 0.77130 1.19620 1.21300 1.18924 1.46256 1.15585 1.55938 1.17256 1.21114 0.81560 0.78075 0.89869 1.90630 1.52607 1.61392 1.42517 1.20815 0.97767 0.96385 0.92367 1.21848 1.02652 0.97381 0.97073 1.21367 0.93964 0.99677 0.97852 1.20439 0.97319 0.98998 0.94443 1.20867 0.93995 0.99189 0.99050 1.21021 1.02097 0.98327 0.96139 1.20609 0.95511 0.99570 0.97746 1.21014 0.98063 0.98060 1.00510 1.20343 0.98048 0.94532 0.97271 0.93705 0.95794 0.93606 0.91090 0.94090 0.92650 0.76557 0.89147 0.92877 0.91781 0.93460 0.92328 0.89892 0.89434 0.90568 0.90995 0.91533 0.91589 0.89917 0.92038 0.89972 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.66 8.51 71.98 0.61 -5.05 16 2 C -0.12 -6.01 5.45 30.59 0.17 -5.84 16 3 C 0.28 14.50 2.24 44.25 0.10 14.60 16 4 H -0.01 -0.34 7.58 -2.39 -0.02 -0.36 16 5 C -0.55 -29.24 8.73 25.60 0.22 -29.02 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.92 -52.91 11.29 21.45 0.24 -52.67 16 9 Si 0.97 42.33 29.54 68.60 2.03 44.36 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 13 N -0.70 -29.54 4.84 -446.08 -2.16 -31.70 16 14 C 0.51 20.48 5.04 87.66 0.44 20.92 16 15 O -0.59 -28.89 13.03 -3.04 -0.04 -28.93 16 16 C -0.07 -2.06 0.63 -52.79 -0.03 -2.09 16 17 C -0.13 -3.18 7.74 71.98 0.56 -2.63 16 18 C -0.09 -2.55 4.34 30.73 0.13 -2.42 16 19 C -0.08 -1.51 5.16 29.66 0.15 -1.35 16 20 C -0.13 -2.48 5.18 -15.10 -0.08 -2.56 16 21 C -0.12 -1.60 8.82 71.24 0.63 -0.97 16 22 C -0.13 -2.82 5.44 -15.10 -0.08 -2.90 16 23 C -0.12 -1.98 8.82 71.23 0.63 -1.35 16 24 C -0.06 -1.70 4.38 29.66 0.13 -1.57 16 25 H 0.04 1.99 5.65 -2.39 -0.01 1.98 16 26 H 0.02 1.19 7.85 -2.39 -0.02 1.17 16 27 H 0.04 1.85 8.14 -2.38 -0.02 1.84 16 28 H 0.07 3.98 5.95 -2.39 -0.01 3.97 16 29 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 31 H 0.40 14.54 7.69 -92.71 -0.71 13.82 16 32 H 0.09 1.77 5.67 -2.39 -0.01 1.76 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.48 7.64 -2.39 -0.02 1.47 16 35 H 0.05 1.49 8.12 -2.39 -0.02 1.47 16 36 H 0.06 1.81 7.89 -2.39 -0.02 1.79 16 37 H 0.08 1.46 8.09 -2.39 -0.02 1.44 16 38 H 0.09 1.54 6.90 -2.39 -0.02 1.52 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.89 6.19 -2.39 -0.01 0.87 16 41 H 0.07 0.80 8.03 -2.39 -0.02 0.78 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.08 1.07 6.19 -2.39 -0.01 1.06 16 44 H 0.06 1.01 8.03 -2.39 -0.02 0.99 16 45 H 0.08 2.02 7.81 -2.39 -0.02 2.00 16 46 H 0.05 1.65 8.10 -2.39 -0.02 1.63 16 Total: -1.00 -65.61 345.93 4.34 -61.26 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.24 Total: 28.60 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 4.03 Total: -20.93 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -1.91 Total: -84.37 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -0.04 Total: -28.93 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -65.61 4.34 -61.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935398905.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.894 kcal (2) G-P(sol) polarization free energy of solvation -65.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds