Wall clock time and date at job start Tue Mar 31 2020 02:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46912 * 2 1 4 4 H 1.08994 * 109.47099 * 54.99765 * 3 2 1 5 5 C 1.50694 * 109.47116 * 174.99733 * 3 2 1 6 6 H 1.08002 * 119.99785 * 119.99711 * 5 3 2 7 7 C 1.37878 * 120.00224 * 300.00429 * 5 3 2 8 8 N 1.31516 * 119.99971 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00074 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47087 * 59.99527 * 9 7 5 11 11 H 1.48499 * 109.47019 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47217 * 299.99541 * 9 7 5 13 13 N 1.46500 * 109.46788 * 294.99700 * 3 2 1 14 14 C 1.34781 * 119.99733 * 85.00570 * 13 3 2 15 15 O 1.21287 * 120.00032 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99844 * 179.97438 * 14 13 3 17 17 C 1.53001 * 109.81290 * 293.20938 * 16 14 13 18 18 C 1.53393 * 109.64458 * 53.73478 * 16 14 13 19 19 C 1.53029 * 108.61277 * 52.36032 * 18 16 14 20 20 C 1.50069 * 110.14817 * 49.32502 * 19 18 16 21 21 C 1.50695 * 117.96001 * 162.89394 * 20 19 18 22 22 C 1.29447 * 124.07511 * 342.87473 * 20 19 18 23 23 C 1.50701 * 117.95951 * 180.46730 * 22 20 19 24 24 C 1.50067 * 124.07435 * 0.44419 * 22 20 19 25 25 H 1.08997 * 109.47400 * 300.00219 * 1 2 3 26 26 H 1.09004 * 109.47257 * 60.00370 * 1 2 3 27 27 H 1.09000 * 109.46857 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47400 * 239.99781 * 2 1 3 29 29 H 1.09004 * 109.47257 * 119.99630 * 2 1 3 30 30 H 0.96995 * 119.99748 * 180.02562 * 8 7 5 31 31 H 0.96994 * 120.00342 * 264.99590 * 13 3 2 32 32 H 1.08997 * 109.47328 * 180.52816 * 17 16 14 33 33 H 1.08999 * 109.47157 * 300.53306 * 17 16 14 34 34 H 1.08999 * 109.46846 * 60.52544 * 17 16 14 35 35 H 1.08990 * 109.64624 * 292.57036 * 18 16 14 36 36 H 1.09003 * 109.64191 * 172.14641 * 18 16 14 37 37 H 1.08995 * 109.35918 * 169.53638 * 19 18 16 38 38 H 1.09001 * 109.35501 * 289.12465 * 19 18 16 39 39 H 1.09000 * 109.47547 * 357.96481 * 21 20 19 40 40 H 1.09002 * 109.47128 * 117.96719 * 21 20 19 41 41 H 1.08998 * 109.46925 * 237.96427 * 21 20 19 42 42 H 1.08997 * 109.47179 * 5.49483 * 23 22 20 43 43 H 1.09003 * 109.46810 * 125.49667 * 23 22 20 44 44 H 1.09003 * 109.47018 * 245.49718 * 23 22 20 45 45 H 1.08997 * 109.35690 * 103.10020 * 24 22 20 46 46 H 1.09006 * 109.35443 * 222.82328 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5418 1.4444 0.1239 6 1 4.1470 1.8890 -0.6523 7 6 4.1431 0.8785 1.2280 8 7 3.4061 0.3375 2.1733 9 14 6.0049 0.8802 1.3812 10 1 6.5003 2.2802 1.3808 11 1 6.3977 0.2169 2.6504 12 1 6.5966 0.1454 0.2344 13 7 1.6523 2.0975 -1.2519 14 6 0.4350 2.6644 -1.3670 15 8 -0.3397 2.6320 -0.4344 16 6 0.0365 3.3385 -2.6545 17 6 0.8950 4.5858 -2.8741 18 6 0.2290 2.3674 -3.8262 19 6 -0.4977 1.0603 -3.5016 20 6 -1.8985 1.3470 -3.0460 21 6 -2.8908 0.2129 -3.0561 22 6 -2.3074 2.5078 -2.6446 23 6 -3.7434 2.6385 -2.2067 24 6 -1.4402 3.7312 -2.5877 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8291 -0.0603 2.9502 31 1 2.2718 2.1232 -1.9978 32 1 0.5960 5.0740 -3.8016 33 1 0.7563 5.2738 -2.0402 34 1 1.9445 4.2981 -2.9369 35 1 1.2915 2.1703 -3.9681 36 1 -0.1876 2.8022 -4.7347 37 1 -0.5287 0.4333 -4.3925 38 1 0.0389 0.5353 -2.7112 39 1 -2.4131 -0.6844 -3.4494 40 1 -3.2375 0.0244 -2.0400 41 1 -3.7396 0.4785 -3.6862 42 1 -4.2152 1.6559 -2.2103 43 1 -3.7798 3.0554 -1.2002 44 1 -4.2738 3.2988 -2.8929 45 1 -1.6760 4.3807 -3.4307 46 1 -1.6292 4.2650 -1.6563 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935398906.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:18 Heat of formation + Delta-G solvation = -68.069399 kcal Electronic energy + Delta-G solvation = -23985.136096 eV Core-core repulsion = 20873.087660 eV Total energy + Delta-G solvation = -3112.048436 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.73990 -38.98638 -36.84571 -35.60397 -34.18764 -32.72926 -32.54263 -29.77784 -28.91239 -27.68795 -25.61787 -25.17865 -23.87962 -23.38414 -21.52031 -20.42580 -18.82608 -17.80660 -17.20524 -16.85043 -16.37817 -15.92138 -15.85216 -15.56434 -15.13784 -14.87176 -14.59274 -14.37488 -13.89681 -13.66263 -13.52275 -13.41993 -13.17867 -13.10393 -13.00299 -12.89686 -12.75276 -12.72403 -12.61206 -12.46855 -12.39849 -12.17222 -12.15182 -11.95271 -11.49822 -11.23483 -11.04359 -10.92963 -10.53636 -10.25267 -9.52403 -9.21853 -8.14522 -6.31958 1.44109 1.44430 1.45980 1.53672 2.05775 2.38006 2.75977 3.14610 3.64502 3.78739 3.85468 4.17510 4.22753 4.38556 4.47240 4.50234 4.55937 4.58956 4.64171 4.66405 4.79135 4.80451 4.82670 4.88292 4.96113 4.96606 4.98983 5.02818 5.10537 5.13495 5.20438 5.25245 5.29494 5.32441 5.35202 5.35853 5.51413 5.59559 5.70535 5.84316 5.89891 5.99572 6.20870 6.31414 6.77597 7.13282 7.36251 7.74239 8.90472 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024262 B = 0.005484 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.797256 B = 5104.407022 C = 5563.404218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.116 4.116 3 C 0.283 3.717 4 H -0.009 1.009 5 C -0.546 4.546 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.968 3.032 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.706 5.706 14 C 0.513 3.487 15 O -0.584 6.584 16 C -0.078 4.078 17 C -0.135 4.135 18 C -0.099 4.099 19 C -0.093 4.093 20 C -0.146 4.146 21 C -0.113 4.113 22 C -0.127 4.127 23 C -0.123 4.123 24 C -0.055 4.055 25 H 0.017 0.983 26 H 0.065 0.935 27 H 0.036 0.964 28 H 0.038 0.962 29 H 0.066 0.934 30 H 0.264 0.736 31 H 0.398 0.602 32 H 0.096 0.904 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.047 0.953 44 H 0.079 0.921 45 H 0.101 0.899 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.279 4.177 -15.699 18.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.155 4.155 3 C 0.179 3.821 4 H 0.009 0.991 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.793 3.207 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.355 5.355 14 C 0.301 3.699 15 O -0.465 6.465 16 C -0.081 4.081 17 C -0.192 4.192 18 C -0.137 4.137 19 C -0.129 4.129 20 C -0.146 4.146 21 C -0.169 4.169 22 C -0.127 4.127 23 C -0.180 4.180 24 C -0.092 4.092 25 H 0.036 0.964 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.232 0.768 32 H 0.115 0.885 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.098 0.902 45 H 0.119 0.881 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.809 4.046 -14.842 17.727 hybrid contribution 1.169 -0.239 0.817 1.446 sum -7.640 3.807 -14.024 16.418 Atomic orbital electron populations 1.21800 0.97081 0.98696 1.01043 1.21727 0.93643 0.99325 1.00804 1.18240 0.93312 0.88937 0.81602 0.99077 1.21569 0.91618 1.38716 1.06559 0.91168 1.25770 1.03214 0.94438 0.95059 1.70058 1.37096 1.38506 1.09860 0.85457 0.79268 0.78438 0.77523 1.19655 1.21320 1.18861 1.46220 1.15770 1.56433 1.17040 1.20955 0.81260 0.77911 0.89809 1.90632 1.52346 1.61006 1.42507 1.20944 0.97404 0.97278 0.92497 1.21811 0.99276 0.95053 1.03083 1.21681 1.01365 0.93860 0.96783 1.20558 0.92938 0.98312 1.01139 1.20738 0.96162 0.95035 1.02646 1.20890 0.98204 0.96550 1.01264 1.20695 0.96829 0.95169 0.99993 1.21037 0.93253 1.03053 1.00624 1.20201 0.90705 0.96040 1.02252 0.96395 0.91618 0.94504 0.94354 0.91551 0.92730 0.76764 0.88512 0.93526 0.91670 0.90305 0.88345 0.89328 0.92890 0.92139 0.93134 0.90236 0.91018 0.93422 0.90246 0.88099 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.03 8.51 71.98 0.61 -5.42 16 2 C -0.12 -5.85 5.45 30.59 0.17 -5.68 16 3 C 0.28 14.69 2.24 44.25 0.10 14.79 16 4 H -0.01 -0.54 7.58 -2.39 -0.02 -0.56 16 5 C -0.55 -29.16 8.73 25.60 0.22 -28.93 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.82 5.29 84.65 0.45 1.27 16 8 N -0.92 -53.39 11.29 21.45 0.24 -53.15 16 9 Si 0.97 42.42 29.54 68.60 2.03 44.45 16 10 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 13 N -0.71 -29.16 4.75 -446.09 -2.12 -31.28 16 14 C 0.51 20.08 3.48 87.66 0.31 20.38 16 15 O -0.58 -27.97 12.46 -3.05 -0.04 -28.01 16 16 C -0.08 -2.15 0.67 -52.81 -0.04 -2.19 16 17 C -0.13 -3.07 8.48 71.98 0.61 -2.46 16 18 C -0.10 -2.24 4.68 30.74 0.14 -2.10 16 19 C -0.09 -2.43 5.06 29.66 0.15 -2.28 16 20 C -0.15 -3.97 5.22 -15.10 -0.08 -4.04 16 21 C -0.11 -2.65 8.34 71.23 0.59 -2.06 16 22 C -0.13 -3.49 5.15 -15.10 -0.08 -3.57 16 23 C -0.12 -2.97 9.63 71.24 0.69 -2.29 16 24 C -0.05 -1.47 4.25 29.63 0.13 -1.34 16 25 H 0.02 0.89 7.85 -2.39 -0.02 0.87 16 26 H 0.07 2.89 3.24 -2.39 -0.01 2.89 16 27 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.07 3.77 5.95 -2.39 -0.01 3.75 16 30 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 31 H 0.40 14.23 7.74 -92.71 -0.72 13.51 16 32 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 1.46 8.11 -2.39 -0.02 1.44 16 35 H 0.08 1.64 7.52 -2.39 -0.02 1.62 16 36 H 0.10 1.71 8.13 -2.39 -0.02 1.69 16 37 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.05 1.74 5.56 -2.39 -0.01 1.73 16 39 H 0.06 1.33 7.93 -2.39 -0.02 1.31 16 40 H 0.05 1.31 7.51 -2.39 -0.02 1.29 16 41 H 0.08 1.53 7.53 -2.39 -0.02 1.51 16 42 H 0.07 1.61 5.21 -2.39 -0.01 1.60 16 43 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.10 2.03 8.10 -2.39 -0.02 2.01 16 46 H 0.06 1.77 7.63 -2.38 -0.02 1.75 16 Total: -1.00 -66.85 343.16 4.33 -62.52 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.24 Total: 31.40 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: 3.97 Total: -25.93 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -1.88 Total: -84.43 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.04 Total: -28.01 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -66.85 4.33 -62.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935398906.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.545 kcal (2) G-P(sol) polarization free energy of solvation -66.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds