Wall clock time and date at job start Tue Mar 31 2020 02:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 120.00381 * 2 1 4 4 C 1.53005 * 109.47053 * 7.98157 * 3 2 1 5 5 C 1.50704 * 109.47040 * 63.87475 * 4 3 2 6 6 O 1.21282 * 119.99795 * 353.09818 * 5 4 3 7 7 N 1.34774 * 119.99897 * 172.82179 * 5 4 3 8 8 C 1.46503 * 120.00032 * 185.30480 * 7 5 4 9 9 H 1.08999 * 109.46772 * 27.69647 * 8 7 5 10 10 C 1.50693 * 109.47016 * 147.69486 * 8 7 5 11 11 H 1.08003 * 120.00380 * 0.02562 * 10 8 7 12 12 C 1.37884 * 119.99804 * 179.97438 * 10 8 7 13 13 N 1.31509 * 120.00031 * 0.02562 * 12 10 8 14 14 Si 1.86805 * 119.99702 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47246 * 60.00543 * 14 12 10 16 16 H 1.48502 * 109.46520 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47280 * 300.00127 * 14 12 10 18 18 C 1.52999 * 109.47227 * 267.69866 * 8 7 5 19 19 C 1.52996 * 109.47514 * 66.90741 * 18 8 7 20 20 C 1.52995 * 109.47017 * 127.98033 * 3 2 1 21 21 C 1.52996 * 109.47114 * 60.00356 * 20 3 2 22 22 C 1.53004 * 109.47558 * 59.99545 * 21 20 3 23 23 C 1.53000 * 109.46784 * 300.00311 * 22 21 20 24 24 C 1.52995 * 109.47196 * 247.98292 * 3 2 1 25 25 H 1.08005 * 119.99598 * 5.79843 * 1 2 3 26 26 H 1.07994 * 120.00278 * 185.80324 * 1 2 3 27 27 H 1.08002 * 119.99242 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.46968 * 303.87880 * 4 3 2 29 29 H 1.09001 * 109.47109 * 183.87562 * 4 3 2 30 30 H 0.97003 * 119.99955 * 5.30601 * 7 5 4 31 31 H 0.96996 * 120.00131 * 179.97438 * 13 12 10 32 32 H 1.09000 * 109.47379 * 186.91275 * 18 8 7 33 33 H 1.09007 * 109.47182 * 306.91101 * 18 8 7 34 34 H 1.08998 * 109.47427 * 301.27945 * 19 18 8 35 35 H 1.09006 * 109.46888 * 61.27597 * 19 18 8 36 36 H 1.09001 * 109.47298 * 181.27650 * 19 18 8 37 37 H 1.09006 * 109.47169 * 179.97438 * 20 3 2 38 38 H 1.09002 * 109.47732 * 299.99665 * 20 3 2 39 39 H 1.08999 * 109.46903 * 299.99473 * 21 20 3 40 40 H 1.08999 * 109.47509 * 179.97438 * 21 20 3 41 41 H 1.08989 * 109.47322 * 179.97438 * 22 21 20 42 42 H 1.09004 * 109.46489 * 59.99637 * 22 21 20 43 43 H 1.08997 * 109.47340 * 299.99234 * 23 22 21 44 44 H 1.09004 * 109.46860 * 179.97438 * 23 22 21 45 45 H 1.09009 * 109.47241 * 59.99465 * 24 3 2 46 46 H 1.08999 * 109.47393 * 179.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 1.0815 2.4611 0.2003 5 6 0.4387 2.3445 1.5584 6 8 0.6402 1.3634 2.2424 7 7 -0.3557 3.3329 2.0150 8 6 -0.8867 3.2747 3.3791 9 1 -0.2055 2.7038 4.0101 10 6 -1.0242 4.6727 3.9247 11 1 -0.7444 5.5199 3.3160 12 6 -1.5082 4.8703 5.2006 13 7 -1.8493 3.8388 5.9415 14 14 -1.6792 6.6033 5.8765 15 1 -2.6072 7.3808 5.0165 16 1 -2.2174 6.5443 7.2593 17 1 -0.3486 7.2625 5.8914 18 6 -2.2578 2.5959 3.3642 19 6 -2.0947 1.1253 2.9748 20 6 3.0873 1.3028 1.1370 21 6 4.0694 0.1468 0.9367 22 6 4.7928 0.3180 -0.4007 23 6 3.7690 0.3202 -1.5376 24 6 2.7869 1.4763 -1.3372 25 1 -0.5400 0.9306 -0.0945 26 1 -0.5400 -0.9304 0.0946 27 1 1.8499 -0.9354 -0.0004 28 1 0.3119 2.4216 -0.5705 29 1 1.6164 3.4083 0.1316 30 1 -0.5758 4.0828 1.4404 31 1 -2.1894 3.9778 6.8392 32 1 -2.7067 2.6617 4.3553 33 1 -2.9021 3.0942 2.6398 34 1 -1.6251 1.0593 1.9933 35 1 -1.4689 0.6216 3.7116 36 1 -3.0738 0.6474 2.9420 37 1 3.6328 2.2466 1.1367 38 1 2.5721 1.1809 2.0897 39 1 3.5244 -0.7971 0.9367 40 1 4.7991 0.1454 1.7464 41 1 5.4927 -0.5052 -0.5431 42 1 5.3378 1.2620 -0.4006 43 1 3.2239 -0.6237 -1.5376 44 1 4.2843 0.4426 -2.4903 45 1 2.0575 1.4778 -2.1473 46 1 3.3316 2.4204 -1.3375 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935399049.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:38 Heat of formation + Delta-G solvation = -43.378569 kcal Electronic energy + Delta-G solvation = -23401.336902 eV Core-core repulsion = 20290.359140 eV Total energy + Delta-G solvation = -3110.977762 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.23658 -38.05356 -35.11653 -33.69325 -32.33119 -31.08189 -30.59837 -30.07558 -27.71504 -26.25707 -23.04558 -22.53569 -22.08051 -20.99945 -19.96789 -19.25789 -17.56027 -16.87379 -16.05839 -15.46307 -15.29376 -15.06084 -14.32447 -14.24839 -14.05118 -13.61032 -13.30853 -13.07420 -12.66078 -12.29085 -12.14870 -12.05094 -11.82713 -11.59651 -11.39985 -11.21152 -11.13422 -11.01873 -10.93473 -10.86136 -10.76994 -10.30542 -10.15694 -9.96821 -9.92356 -9.88613 -9.58798 -9.09590 -8.98697 -8.49796 -8.37049 -7.69653 -6.08771 -4.17985 2.77547 3.26664 3.32140 3.33135 3.54650 4.18696 4.41897 4.72436 4.82521 4.94937 5.15849 5.22228 5.27381 5.34012 5.41882 5.53713 5.63019 5.69127 5.76039 5.81571 5.85046 5.91912 5.94010 6.04768 6.14398 6.23113 6.25659 6.36656 6.41100 6.43645 6.50509 6.62589 6.69591 6.86741 7.00670 7.08314 7.23364 7.26091 7.41064 7.55932 7.66419 7.78124 7.98873 8.23672 8.77357 8.83774 9.26915 9.50403 10.96103 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026740 B = 0.004474 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.849837 B = 6256.971522 C = 6667.787618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.127 4.127 3 C -0.005 4.005 4 C -0.141 4.141 5 C 0.501 3.499 6 O -0.534 6.534 7 N -0.714 5.714 8 C 0.272 3.728 9 H 0.051 0.949 10 C -0.534 4.534 11 H 0.059 0.941 12 C 0.067 3.933 13 N -0.883 5.883 14 Si 0.899 3.101 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.277 1.277 18 C -0.127 4.127 19 C -0.137 4.137 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.106 4.106 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.385 0.615 31 H 0.264 0.736 32 H 0.097 0.903 33 H 0.028 0.972 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.021 0.979 37 H 0.052 0.948 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.017 -4.929 -13.960 16.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.145 4.145 3 C -0.006 4.006 4 C -0.181 4.181 5 C 0.286 3.714 6 O -0.413 6.413 7 N -0.362 5.362 8 C 0.170 3.830 9 H 0.069 0.931 10 C -0.572 4.572 11 H 0.077 0.923 12 C -0.136 4.136 13 N -0.520 5.520 14 Si 0.726 3.274 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.203 1.203 18 C -0.166 4.166 19 C -0.194 4.194 20 C -0.156 4.156 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.154 4.154 24 C -0.143 4.143 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.120 0.880 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.217 0.783 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.118 0.882 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.087 -5.667 -13.234 16.512 hybrid contribution -0.335 1.368 0.151 1.417 sum 7.752 -4.299 -13.082 15.803 Atomic orbital electron populations 1.23699 0.96112 1.01158 1.01080 1.22504 0.95305 0.96916 0.99734 1.19306 0.94052 0.92260 0.94976 1.21903 0.99504 0.99908 0.96817 1.20255 0.79708 0.83515 0.87880 1.90610 1.61548 1.30237 1.58888 1.46500 1.49364 1.22838 1.17486 1.18721 0.91293 0.95986 0.77040 0.93130 1.21255 1.44340 0.91890 0.99730 0.92320 1.24880 0.94967 0.97165 0.96636 1.69881 1.42922 1.29466 1.09760 0.86558 0.78431 0.84332 0.78058 1.20220 1.21170 1.20252 1.21919 0.99543 0.92535 1.02634 1.21788 0.98279 0.98419 1.00944 1.21845 0.95744 0.97467 1.00501 1.21531 0.98077 0.99521 0.96353 1.21557 0.97550 1.01213 0.95352 1.21509 0.97019 0.99110 0.97790 1.21588 0.97841 0.98466 0.96433 0.88985 0.89364 0.88012 0.89582 0.89838 0.78338 0.92597 0.88457 0.95312 0.93816 0.93447 0.96011 0.92941 0.88212 0.91916 0.92528 0.92675 0.92349 0.91835 0.92574 0.92177 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.73 11.67 29.01 0.34 -2.39 16 2 C -0.13 -1.78 6.42 -36.03 -0.23 -2.01 16 3 C -0.01 -0.07 0.50 -155.66 -0.08 -0.15 16 4 C -0.14 -1.98 4.27 -27.88 -0.12 -2.10 16 5 C 0.50 9.29 4.81 -10.98 -0.05 9.24 16 6 O -0.53 -11.38 9.51 5.56 0.05 -11.33 16 7 N -0.71 -14.36 4.88 -54.93 -0.27 -14.63 16 8 C 0.27 6.72 2.19 -69.08 -0.15 6.57 16 9 H 0.05 1.46 7.42 -51.93 -0.39 1.08 16 10 C -0.53 -14.06 8.74 -34.44 -0.30 -14.36 16 11 H 0.06 1.49 7.80 -52.48 -0.41 1.08 16 12 C 0.07 1.78 5.28 -17.82 -0.09 1.69 16 13 N -0.88 -24.76 11.29 55.43 0.63 -24.13 16 14 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 19 C -0.14 -3.01 8.75 37.16 0.33 -2.69 16 20 C -0.12 -1.70 4.37 -26.74 -0.12 -1.82 16 21 C -0.12 -1.44 5.69 -26.73 -0.15 -1.59 16 22 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 23 C -0.12 -1.16 5.70 -26.73 -0.15 -1.31 16 24 C -0.11 -1.14 4.72 -26.73 -0.13 -1.26 16 25 H 0.09 1.41 5.00 -52.48 -0.26 1.15 16 26 H 0.09 1.26 8.06 -52.49 -0.42 0.83 16 27 H 0.10 1.35 5.98 -52.49 -0.31 1.04 16 28 H 0.09 1.08 6.78 -51.93 -0.35 0.73 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.39 6.84 8.67 -40.82 -0.35 6.48 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.10 2.62 5.91 -51.93 -0.31 2.31 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.04 0.92 5.36 -51.93 -0.28 0.64 16 35 H 0.05 1.11 8.13 -51.93 -0.42 0.69 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 1.81 5.44 -51.93 -0.28 1.52 16 39 H 0.06 0.79 6.48 -51.93 -0.34 0.45 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.51 8.14 -51.94 -0.42 0.08 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.64 6.78 -51.93 -0.35 0.29 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 338.59 15.07 5.10 5.10 Total: -1.00 -28.32 338.59 -8.57 -36.88 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.84 Total: 9.22 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -1.22 Total: -16.76 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.36 Total: -38.76 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.05 Total: -11.33 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.32 -8.57 -36.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399049.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.496 kcal (2) G-P(sol) polarization free energy of solvation -28.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds