Wall clock time and date at job start Tue Mar 31 2020 02:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 120.00381 * 2 1 4 4 C 1.53005 * 109.47053 * 7.98157 * 3 2 1 5 5 C 1.50704 * 109.47040 * 63.87475 * 4 3 2 6 6 O 1.21282 * 119.99795 * 353.09818 * 5 4 3 7 7 N 1.34774 * 119.99897 * 172.82179 * 5 4 3 8 8 C 1.46503 * 120.00032 * 185.30480 * 7 5 4 9 9 H 1.08999 * 109.46772 * 27.69647 * 8 7 5 10 10 C 1.50693 * 109.47016 * 147.69486 * 8 7 5 11 11 H 1.08003 * 120.00380 * 0.02562 * 10 8 7 12 12 C 1.37884 * 119.99804 * 179.97438 * 10 8 7 13 13 N 1.31509 * 120.00031 * 0.02562 * 12 10 8 14 14 Si 1.86805 * 119.99702 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47246 * 60.00543 * 14 12 10 16 16 H 1.48502 * 109.46520 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47280 * 300.00127 * 14 12 10 18 18 C 1.52999 * 109.47227 * 267.69866 * 8 7 5 19 19 C 1.52996 * 109.47514 * 66.90741 * 18 8 7 20 20 C 1.52995 * 109.47017 * 127.98033 * 3 2 1 21 21 C 1.52996 * 109.47114 * 60.00356 * 20 3 2 22 22 C 1.53004 * 109.47558 * 59.99545 * 21 20 3 23 23 C 1.53000 * 109.46784 * 300.00311 * 22 21 20 24 24 C 1.52995 * 109.47196 * 247.98292 * 3 2 1 25 25 H 1.08005 * 119.99598 * 5.79843 * 1 2 3 26 26 H 1.07994 * 120.00278 * 185.80324 * 1 2 3 27 27 H 1.08002 * 119.99242 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.46968 * 303.87880 * 4 3 2 29 29 H 1.09001 * 109.47109 * 183.87562 * 4 3 2 30 30 H 0.97003 * 119.99955 * 5.30601 * 7 5 4 31 31 H 0.96996 * 120.00131 * 179.97438 * 13 12 10 32 32 H 1.09000 * 109.47379 * 186.91275 * 18 8 7 33 33 H 1.09007 * 109.47182 * 306.91101 * 18 8 7 34 34 H 1.08998 * 109.47427 * 301.27945 * 19 18 8 35 35 H 1.09006 * 109.46888 * 61.27597 * 19 18 8 36 36 H 1.09001 * 109.47298 * 181.27650 * 19 18 8 37 37 H 1.09006 * 109.47169 * 179.97438 * 20 3 2 38 38 H 1.09002 * 109.47732 * 299.99665 * 20 3 2 39 39 H 1.08999 * 109.46903 * 299.99473 * 21 20 3 40 40 H 1.08999 * 109.47509 * 179.97438 * 21 20 3 41 41 H 1.08989 * 109.47322 * 179.97438 * 22 21 20 42 42 H 1.09004 * 109.46489 * 59.99637 * 22 21 20 43 43 H 1.08997 * 109.47340 * 299.99234 * 23 22 21 44 44 H 1.09004 * 109.46860 * 179.97438 * 23 22 21 45 45 H 1.09009 * 109.47241 * 59.99465 * 24 3 2 46 46 H 1.08999 * 109.47393 * 179.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 1.0815 2.4611 0.2003 5 6 0.4387 2.3445 1.5584 6 8 0.6402 1.3634 2.2424 7 7 -0.3557 3.3329 2.0150 8 6 -0.8867 3.2747 3.3791 9 1 -0.2055 2.7038 4.0101 10 6 -1.0242 4.6727 3.9247 11 1 -0.7444 5.5199 3.3160 12 6 -1.5082 4.8703 5.2006 13 7 -1.8493 3.8388 5.9415 14 14 -1.6792 6.6033 5.8765 15 1 -2.6072 7.3808 5.0165 16 1 -2.2174 6.5443 7.2593 17 1 -0.3486 7.2625 5.8914 18 6 -2.2578 2.5959 3.3642 19 6 -2.0947 1.1253 2.9748 20 6 3.0873 1.3028 1.1370 21 6 4.0694 0.1468 0.9367 22 6 4.7928 0.3180 -0.4007 23 6 3.7690 0.3202 -1.5376 24 6 2.7869 1.4763 -1.3372 25 1 -0.5400 0.9306 -0.0945 26 1 -0.5400 -0.9304 0.0946 27 1 1.8499 -0.9354 -0.0004 28 1 0.3119 2.4216 -0.5705 29 1 1.6164 3.4083 0.1316 30 1 -0.5758 4.0828 1.4404 31 1 -2.1894 3.9778 6.8392 32 1 -2.7067 2.6617 4.3553 33 1 -2.9021 3.0942 2.6398 34 1 -1.6251 1.0593 1.9933 35 1 -1.4689 0.6216 3.7116 36 1 -3.0738 0.6474 2.9420 37 1 3.6328 2.2466 1.1367 38 1 2.5721 1.1809 2.0897 39 1 3.5244 -0.7971 0.9367 40 1 4.7991 0.1454 1.7464 41 1 5.4927 -0.5052 -0.5431 42 1 5.3378 1.2620 -0.4006 43 1 3.2239 -0.6237 -1.5376 44 1 4.2843 0.4426 -2.4903 45 1 2.0575 1.4778 -2.1473 46 1 3.3316 2.4204 -1.3375 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935399049.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:37 Heat of formation + Delta-G solvation = -58.610169 kcal Electronic energy + Delta-G solvation = -23401.997394 eV Core-core repulsion = 20290.359140 eV Total energy + Delta-G solvation = -3111.638253 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.48951 -39.40661 -36.86073 -34.81987 -34.22328 -32.84899 -31.53483 -31.27107 -29.31039 -27.79125 -24.92411 -23.48203 -23.20390 -22.31206 -21.45196 -20.90325 -18.87025 -18.47240 -17.41973 -17.04273 -16.80192 -16.38633 -15.98284 -15.36758 -15.13505 -15.03091 -14.57306 -14.49583 -14.24721 -13.80051 -13.48955 -13.21322 -13.16488 -13.07605 -12.94433 -12.70879 -12.68211 -12.58188 -12.20663 -12.13247 -11.98159 -11.93346 -11.80386 -11.53969 -11.09455 -11.06300 -10.90921 -10.88106 -10.50910 -10.36735 -9.70698 -9.42815 -8.13370 -6.30485 1.44101 1.45610 1.53286 1.64358 2.06934 2.39429 2.80839 3.15514 3.70496 3.85113 3.97389 4.16059 4.26957 4.31844 4.40029 4.50369 4.52642 4.61465 4.64496 4.69880 4.72959 4.75130 4.82407 4.88495 4.91237 5.01143 5.09848 5.13677 5.27227 5.30016 5.31128 5.33604 5.38482 5.47647 5.49720 5.59459 5.63828 5.66849 5.78002 5.84973 5.88105 6.05200 6.11892 6.23831 6.79783 7.16242 7.37737 7.79014 8.90954 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026740 B = 0.004474 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.849837 B = 6256.971522 C = 6667.787618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.005 4.005 4 C -0.133 4.133 5 C 0.497 3.503 6 O -0.563 6.563 7 N -0.715 5.715 8 C 0.282 3.718 9 H -0.001 1.001 10 C -0.548 4.548 11 H 0.067 0.933 12 C 0.016 3.984 13 N -0.915 5.915 14 Si 0.966 3.034 15 H -0.265 1.265 16 H -0.287 1.287 17 H -0.273 1.273 18 C -0.121 4.121 19 C -0.122 4.122 20 C -0.117 4.117 21 C -0.116 4.116 22 C -0.114 4.114 23 C -0.116 4.116 24 C -0.101 4.101 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.399 0.601 31 H 0.263 0.737 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.053 0.947 35 H 0.021 0.979 36 H 0.041 0.959 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.813 -3.905 -16.405 19.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.141 4.141 3 C -0.005 4.005 4 C -0.172 4.172 5 C 0.285 3.715 6 O -0.443 6.443 7 N -0.365 5.365 8 C 0.178 3.822 9 H 0.017 0.983 10 C -0.586 4.586 11 H 0.086 0.914 12 C -0.184 4.184 13 N -0.554 5.554 14 Si 0.791 3.209 15 H -0.190 1.190 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.160 4.160 19 C -0.180 4.180 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.152 4.152 23 C -0.153 4.153 24 C -0.138 4.138 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.233 0.767 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.894 -4.637 -15.719 18.647 hybrid contribution -0.539 0.988 0.951 1.473 sum 8.355 -3.648 -14.769 17.356 Atomic orbital electron populations 1.23714 0.96512 1.01024 1.02449 1.22674 0.95210 0.97710 0.98471 1.19346 0.93598 0.91410 0.96148 1.21924 1.00117 1.01331 0.93865 1.21072 0.78777 0.82375 0.89293 1.90618 1.62075 1.31406 1.60217 1.46302 1.50051 1.24120 1.16008 1.18240 0.90451 0.94703 0.78766 0.98315 1.21625 1.44047 0.92758 1.00203 0.91444 1.25740 0.94641 1.01015 0.97023 1.70043 1.43722 1.31639 1.09954 0.85498 0.78570 0.79587 0.77269 1.18969 1.21259 1.19802 1.21764 0.99136 0.93905 1.01171 1.21622 0.98928 0.96937 1.00470 1.21744 0.96264 0.98499 0.98937 1.21507 0.97669 0.98206 0.97970 1.21527 0.97683 1.02074 0.93904 1.21519 0.96744 0.98555 0.98482 1.21565 0.98145 0.99420 0.94677 0.89475 0.89322 0.87475 0.87354 0.87824 0.76734 0.92759 0.91435 0.94355 0.92841 0.95999 0.93967 0.92671 0.92528 0.92629 0.92789 0.91327 0.91806 0.92154 0.90510 0.90954 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.80 11.67 67.78 0.79 -5.01 16 2 C -0.12 -3.31 6.42 25.64 0.16 -3.15 16 3 C 0.00 -0.11 0.50 -52.93 -0.03 -0.14 16 4 C -0.13 -3.46 4.27 29.85 0.13 -3.33 16 5 C 0.50 18.41 4.81 87.66 0.42 18.83 16 6 O -0.56 -24.74 9.51 -3.04 -0.03 -24.77 16 7 N -0.72 -28.77 4.88 -446.10 -2.18 -30.94 16 8 C 0.28 14.37 2.19 44.24 0.10 14.46 16 9 H 0.00 -0.07 7.42 -2.39 -0.02 -0.08 16 10 C -0.55 -29.15 8.74 25.60 0.22 -28.93 16 11 H 0.07 3.38 7.80 -2.91 -0.02 3.36 16 12 C 0.02 0.85 5.28 84.66 0.45 1.30 16 13 N -0.92 -52.84 11.29 21.45 0.24 -52.60 16 14 Si 0.97 42.43 29.54 68.60 2.03 44.46 16 15 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 16 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 C -0.12 -5.95 5.45 30.59 0.17 -5.78 16 19 C -0.12 -5.47 8.75 71.98 0.63 -4.84 16 20 C -0.12 -3.32 4.37 30.59 0.13 -3.18 16 21 C -0.12 -2.74 5.69 30.59 0.17 -2.56 16 22 C -0.11 -2.04 5.92 30.60 0.18 -1.85 16 23 C -0.12 -1.90 5.70 30.59 0.17 -1.72 16 24 C -0.10 -1.82 4.72 30.59 0.14 -1.68 16 25 H 0.09 2.58 5.00 -2.91 -0.01 2.56 16 26 H 0.09 2.50 8.06 -2.91 -0.02 2.48 16 27 H 0.11 2.75 5.98 -2.91 -0.02 2.73 16 28 H 0.11 2.40 6.78 -2.39 -0.02 2.39 16 29 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.40 13.73 8.67 -92.71 -0.80 12.92 16 31 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 32 H 0.07 3.76 5.91 -2.39 -0.01 3.74 16 33 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.05 2.26 5.36 -2.39 -0.01 2.24 16 35 H 0.02 1.05 8.13 -2.38 -0.02 1.03 16 36 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.06 2.12 5.44 -2.39 -0.01 2.11 16 39 H 0.05 1.37 6.48 -2.39 -0.02 1.36 16 40 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.06 1.05 6.78 -2.39 -0.02 1.03 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 46 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -63.29 338.59 4.06 -59.23 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.15 Total: 32.21 kcal Atomic # 6 Polarization: -31.44 SS G_CDS: 3.85 Total: -27.58 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -1.94 Total: -83.55 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.03 Total: -24.77 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -63.29 4.06 -59.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399049.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.616 kcal (2) G-P(sol) polarization free energy of solvation -63.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds