Wall clock time and date at job start Tue Mar 31 2020 02:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 120.00133 * 2 1 4 4 C 1.53002 * 109.47093 * 352.06255 * 3 2 1 5 5 C 1.50704 * 109.46873 * 300.32416 * 4 3 2 6 6 O 1.21276 * 120.00342 * 1.89767 * 5 4 3 7 7 N 1.34784 * 119.99917 * 181.89992 * 5 4 3 8 8 C 1.46494 * 119.99999 * 185.51580 * 7 5 4 9 9 H 1.09005 * 109.47022 * 335.83865 * 8 7 5 10 10 C 1.50706 * 109.46792 * 215.84509 * 8 7 5 11 11 H 1.07993 * 120.00488 * 359.97438 * 10 8 7 12 12 C 1.37877 * 119.99640 * 180.02562 * 10 8 7 13 13 N 1.31513 * 119.99963 * 359.97438 * 12 10 8 14 14 Si 1.86795 * 119.99768 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47136 * 90.00005 * 14 12 10 16 16 H 1.48508 * 109.47450 * 209.99672 * 14 12 10 17 17 H 1.48497 * 109.47339 * 329.99827 * 14 12 10 18 18 C 1.52992 * 109.47286 * 95.84468 * 8 7 5 19 19 C 1.53002 * 109.47151 * 296.23830 * 18 8 7 20 20 C 1.53000 * 109.47055 * 232.06589 * 3 2 1 21 21 C 1.53002 * 109.46897 * 299.99786 * 20 3 2 22 22 C 1.53004 * 109.47244 * 300.00052 * 21 20 3 23 23 C 1.53006 * 109.46817 * 59.99848 * 22 21 20 24 24 C 1.52996 * 109.47303 * 112.06000 * 3 2 1 25 25 H 1.08003 * 119.99815 * 355.44154 * 1 2 3 26 26 H 1.07997 * 120.00373 * 175.17071 * 1 2 3 27 27 H 1.07999 * 119.99798 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47269 * 60.31855 * 4 3 2 29 29 H 1.08997 * 109.47221 * 180.32318 * 4 3 2 30 30 H 0.96996 * 119.99494 * 5.51378 * 7 5 4 31 31 H 0.97006 * 119.99738 * 179.97438 * 13 12 10 32 32 H 1.08996 * 109.47410 * 56.23383 * 18 8 7 33 33 H 1.09001 * 109.47802 * 176.24107 * 18 8 7 34 34 H 1.09002 * 109.47563 * 185.19612 * 19 18 8 35 35 H 1.09004 * 109.47008 * 305.19606 * 19 18 8 36 36 H 1.08995 * 109.47203 * 65.19469 * 19 18 8 37 37 H 1.08999 * 109.47035 * 59.99611 * 20 3 2 38 38 H 1.08998 * 109.46862 * 180.02562 * 20 3 2 39 39 H 1.08998 * 109.47459 * 180.02562 * 21 20 3 40 40 H 1.09006 * 109.47329 * 59.99953 * 21 20 3 41 41 H 1.08998 * 109.47077 * 300.00794 * 22 21 20 42 42 H 1.08998 * 109.47203 * 179.97438 * 22 21 20 43 43 H 1.09006 * 109.46988 * 180.02562 * 23 22 21 44 44 H 1.09006 * 109.47128 * 60.00484 * 23 22 21 45 45 H 1.08999 * 109.47171 * 179.97438 * 24 3 2 46 46 H 1.08997 * 109.47176 * 300.00438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0813 2.4612 -0.1992 5 6 0.3622 2.2887 -1.5123 6 8 0.5857 1.3173 -2.2031 7 7 -0.5294 3.2141 -1.9191 8 6 -1.3165 2.9887 -3.1339 9 1 -0.7873 2.2937 -3.7860 10 6 -1.5171 4.2980 -3.8526 11 1 -1.1004 5.2072 -3.4450 12 6 -2.2336 4.3354 -5.0299 13 7 -2.7415 3.2284 -5.5260 14 14 -2.4829 5.9584 -5.9204 15 1 -1.3704 6.1723 -6.8805 16 1 -3.7725 5.9264 -6.6563 17 1 -2.5042 7.0669 -4.9325 18 6 -2.6774 2.3996 -2.7578 19 6 -2.4781 1.0268 -2.1121 20 6 3.0865 1.3034 -1.1377 21 6 4.0688 0.1473 -0.9385 22 6 4.7931 0.3181 0.3983 23 6 3.7700 0.3199 1.5360 24 6 2.7877 1.4759 1.3368 25 1 -0.5400 0.9324 0.0743 26 1 -0.5400 -0.9319 -0.0787 27 1 1.8499 -0.9353 0.0004 28 1 0.3559 2.4659 0.6143 29 1 1.6269 3.4047 -0.2049 30 1 -0.6497 4.0293 -1.4074 31 1 -3.2459 3.2547 -6.3542 32 1 -3.1784 3.0632 -2.0530 33 1 -3.2881 2.2940 -3.6545 34 1 -3.4493 0.5672 -1.9283 35 1 -1.8963 0.3920 -2.7805 36 1 -1.9467 1.1433 -1.1676 37 1 2.5705 1.1817 -2.0901 38 1 3.6318 2.2471 -1.1374 39 1 4.7979 0.1463 -1.7488 40 1 3.5237 -0.7967 -0.9385 41 1 5.3380 1.2621 0.3984 42 1 5.4925 -0.5057 0.5405 43 1 4.2859 0.4420 2.4885 44 1 3.2250 -0.6241 1.5361 45 1 3.3331 2.4197 1.3366 46 1 2.0589 1.4771 2.1473 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935399050.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:41 Heat of formation + Delta-G solvation = -59.049875 kcal Electronic energy + Delta-G solvation = -23424.336327 eV Core-core repulsion = 20312.679006 eV Total energy + Delta-G solvation = -3111.657320 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.51155 -39.38428 -36.89157 -34.79923 -34.23404 -32.85520 -31.53637 -31.25447 -29.37692 -27.77066 -24.95482 -23.47088 -23.15704 -22.37585 -21.42125 -20.91223 -18.86829 -18.51070 -17.47990 -17.02479 -16.80788 -16.35127 -15.91877 -15.41207 -15.12670 -14.94781 -14.57594 -14.49027 -14.24605 -13.96669 -13.46042 -13.23618 -13.17725 -13.05311 -12.93522 -12.74719 -12.67097 -12.59180 -12.25539 -12.11126 -11.97222 -11.89599 -11.80177 -11.55574 -11.09017 -11.06973 -10.89723 -10.88124 -10.53783 -10.37321 -9.70356 -9.42580 -8.13468 -6.30077 1.43160 1.43674 1.53940 1.64996 2.07343 2.38750 2.80373 3.15421 3.70359 3.84844 3.97178 4.15691 4.27687 4.30687 4.40173 4.48547 4.53291 4.56783 4.65028 4.69266 4.73457 4.74449 4.80863 4.89365 4.91194 5.00957 5.07625 5.15133 5.27304 5.28459 5.31695 5.34013 5.38454 5.45318 5.49560 5.58919 5.64410 5.67373 5.78307 5.84505 5.88176 6.06366 6.12124 6.23519 6.80498 7.15524 7.37997 7.79298 8.90948 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.028270 B = 0.004436 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.209587 B = 6310.786995 C = 6718.472445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 C -0.005 4.005 4 C -0.133 4.133 5 C 0.500 3.500 6 O -0.569 6.569 7 N -0.716 5.716 8 C 0.278 3.722 9 H 0.003 0.997 10 C -0.547 4.547 11 H 0.065 0.935 12 C 0.015 3.985 13 N -0.915 5.915 14 Si 0.965 3.035 15 H -0.281 1.281 16 H -0.284 1.284 17 H -0.261 1.261 18 C -0.121 4.121 19 C -0.128 4.128 20 C -0.114 4.114 21 C -0.117 4.117 22 C -0.114 4.114 23 C -0.116 4.116 24 C -0.100 4.100 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.399 0.601 31 H 0.263 0.737 32 H 0.040 0.960 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.023 0.977 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.791 -2.484 15.871 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.142 4.142 3 C -0.006 4.006 4 C -0.173 4.173 5 C 0.287 3.713 6 O -0.449 6.449 7 N -0.365 5.365 8 C 0.175 3.825 9 H 0.021 0.979 10 C -0.585 4.585 11 H 0.084 0.916 12 C -0.185 4.185 13 N -0.554 5.554 14 Si 0.790 3.210 15 H -0.207 1.207 16 H -0.209 1.209 17 H -0.185 1.185 18 C -0.160 4.160 19 C -0.185 4.185 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.151 4.151 23 C -0.154 4.154 24 C -0.138 4.138 25 H 0.106 0.894 26 H 0.104 0.896 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.233 0.767 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.820 -3.245 15.230 18.962 hybrid contribution -0.656 0.879 -1.062 1.527 sum 10.164 -2.366 14.168 17.596 Atomic orbital electron populations 1.23756 0.96572 1.00860 1.02413 1.22670 0.95129 0.97813 0.98576 1.19364 0.93621 0.91291 0.96281 1.21927 0.99535 1.01385 0.94432 1.21059 0.79388 0.82408 0.88399 1.90624 1.64861 1.31737 1.57672 1.46264 1.40467 1.21693 1.28067 1.18273 0.87549 0.94789 0.81924 0.97939 1.21669 1.34354 0.94459 1.08055 0.91639 1.25731 0.95013 0.99882 0.97825 1.70049 1.35973 1.28504 1.20886 0.85457 0.77251 0.79734 0.78557 1.20675 1.20922 1.18536 1.21752 0.99719 0.94691 0.99810 1.21690 0.99577 0.97353 0.99870 1.21695 0.96168 0.98669 0.98622 1.21513 0.97681 0.98168 0.98047 1.21525 0.97641 1.02144 0.93826 1.21527 0.96772 0.98522 0.98547 1.21561 0.98113 0.99506 0.94584 0.89378 0.89592 0.87514 0.87504 0.87555 0.76727 0.92787 0.94128 0.91472 0.93553 0.95799 0.92670 0.92864 0.92241 0.92625 0.92810 0.91610 0.91368 0.90490 0.92306 0.90734 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.04 11.28 67.78 0.76 -5.28 16 2 C -0.12 -3.44 6.38 25.65 0.16 -3.28 16 3 C -0.01 -0.13 0.50 -52.93 -0.03 -0.15 16 4 C -0.13 -3.47 4.23 29.85 0.13 -3.34 16 5 C 0.50 18.61 4.49 87.66 0.39 19.01 16 6 O -0.57 -25.49 10.62 -3.02 -0.03 -25.52 16 7 N -0.72 -28.81 4.75 -446.10 -2.12 -30.93 16 8 C 0.28 14.18 2.25 44.25 0.10 14.28 16 9 H 0.00 0.16 7.20 -2.38 -0.02 0.15 16 10 C -0.55 -29.32 8.76 25.60 0.22 -29.09 16 11 H 0.07 3.33 7.81 -2.91 -0.02 3.31 16 12 C 0.02 0.83 5.30 84.65 0.45 1.28 16 13 N -0.92 -53.01 11.30 21.45 0.24 -52.76 16 14 Si 0.96 42.76 29.54 68.60 2.03 44.78 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 18 C -0.12 -5.85 5.44 30.59 0.17 -5.69 16 19 C -0.13 -5.48 8.92 71.98 0.64 -4.84 16 20 C -0.11 -3.16 4.43 30.60 0.14 -3.02 16 21 C -0.12 -2.70 5.69 30.60 0.17 -2.52 16 22 C -0.11 -1.98 5.92 30.60 0.18 -1.79 16 23 C -0.12 -1.90 5.70 30.60 0.17 -1.72 16 24 C -0.10 -1.80 4.72 30.59 0.14 -1.65 16 25 H 0.09 2.75 3.61 -2.91 -0.01 2.74 16 26 H 0.09 2.58 8.06 -2.91 -0.02 2.55 16 27 H 0.11 2.82 5.98 -2.91 -0.02 2.80 16 28 H 0.11 2.39 7.08 -2.39 -0.02 2.37 16 29 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.40 13.73 8.71 -92.71 -0.81 12.92 16 31 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 32 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.07 3.70 5.98 -2.39 -0.01 3.69 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.02 1.11 8.11 -2.38 -0.02 1.09 16 36 H 0.05 2.15 4.67 -2.39 -0.01 2.14 16 37 H 0.05 1.96 5.61 -2.39 -0.01 1.94 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.05 1.33 6.48 -2.38 -0.02 1.31 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 44 H 0.06 1.03 6.78 -2.38 -0.02 1.02 16 45 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -64.19 337.34 4.08 -60.11 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: 0.15 Total: 32.13 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 3.81 Total: -27.81 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -1.88 Total: -83.69 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.03 Total: -25.52 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -64.19 4.08 -60.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399050.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.062 kcal (2) G-P(sol) polarization free energy of solvation -64.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds