Wall clock time and date at job start Tue Mar 31 2020 01:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 C 1.50701 * 109.47212 * 300.00129 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 14 14 N 1.46507 * 109.47485 * 59.99555 * 13 2 1 15 15 C 1.34770 * 119.99912 * 179.97438 * 14 13 2 16 16 O 1.21286 * 120.00222 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00019 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47342 * 180.02562 * 17 15 14 19 19 H 1.08996 * 109.64121 * 55.00085 * 18 17 15 20 20 C 1.53029 * 109.64069 * 294.57876 * 18 17 15 21 21 C 1.50168 * 110.09350 * 191.09634 * 20 18 17 22 22 C 1.29438 * 124.14978 * 16.72199 * 21 20 18 23 23 C 1.50067 * 124.07612 * 359.75296 * 22 21 20 24 24 C 1.53024 * 110.14731 * 17.13710 * 23 22 21 25 25 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 30 30 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 31 31 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 33 33 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47103 * 179.97438 * 13 2 1 35 35 H 1.09001 * 109.47066 * 299.99881 * 13 2 1 36 36 H 0.96992 * 119.99570 * 0.02562 * 14 13 2 37 37 H 1.09002 * 109.47210 * 300.00400 * 17 15 14 38 38 H 1.09001 * 109.47122 * 60.00417 * 17 15 14 39 39 H 1.09002 * 109.35889 * 311.08659 * 20 18 17 40 40 H 1.09000 * 109.35588 * 70.67457 * 20 18 17 41 41 H 1.08000 * 117.88579 * 196.92464 * 21 20 18 42 42 H 1.07998 * 117.96239 * 179.74197 * 22 21 20 43 43 H 1.08999 * 109.36307 * 256.93136 * 23 22 21 44 44 H 1.09003 * 109.24667 * 137.27078 * 23 22 21 45 45 H 1.09003 * 109.64892 * 190.87677 * 24 23 22 46 46 H 1.08999 * 109.64057 * 70.24294 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5377 -0.0108 2.4797 6 1 0.9164 0.8670 2.3806 7 6 1.8704 -0.4822 3.7320 8 7 2.6265 -1.5515 3.8526 9 14 1.2471 0.3979 5.2571 10 1 -0.2380 0.3977 5.2567 11 1 1.7422 -0.3021 6.4697 12 1 1.7420 1.7981 5.2577 13 6 2.0401 -0.7211 -1.2492 14 7 1.5517 -0.0305 -2.4455 15 6 1.8777 -0.4906 -3.6695 16 8 2.5751 -1.4767 -3.7808 17 6 1.3759 0.2200 -4.9000 18 6 1.8858 -0.5012 -6.1492 19 1 1.5985 -1.5518 -6.1086 20 6 3.4101 -0.3871 -6.2228 21 6 3.8977 -0.8484 -7.5661 22 6 3.1407 -0.9811 -8.6076 23 6 1.6671 -0.6973 -8.6177 24 6 1.2851 0.1496 -7.4017 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 -0.7208 1.2495 32 1 1.6767 -1.7489 1.2492 33 1 2.8608 -1.8829 4.7336 34 1 3.1301 -0.7207 -1.2494 35 1 1.6767 -1.7488 -1.2493 36 1 0.9943 0.7583 -2.3564 37 1 0.2859 0.2201 -4.9004 38 1 1.7392 1.2477 -4.8996 39 1 3.7023 0.6522 -6.0727 40 1 3.8565 -1.0023 -5.4415 41 1 4.9459 -1.0875 -7.6682 42 1 3.5980 -1.3167 -9.5266 43 1 1.1177 -1.6383 -8.5895 44 1 1.4115 -0.1568 -9.5291 45 1 0.1998 0.1894 -7.3091 46 1 1.6833 1.1576 -7.5176 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935993003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:24 Heat of formation + Delta-G solvation = -63.598947 kcal Electronic energy + Delta-G solvation = -21929.263539 eV Core-core repulsion = 18817.408956 eV Total energy + Delta-G solvation = -3111.854583 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.98195 -38.40272 -36.99016 -33.57592 -32.88005 -32.04148 -30.87484 -28.02443 -27.00976 -26.52141 -25.65417 -23.40914 -22.84384 -21.36837 -20.02762 -18.28831 -18.04825 -16.69020 -16.37107 -16.09771 -15.41266 -15.27741 -14.55483 -14.38600 -14.10024 -13.94173 -13.35067 -13.14176 -12.98366 -12.77646 -12.69457 -12.44479 -12.20834 -12.11479 -12.04489 -11.65066 -11.14744 -11.00974 -10.88148 -10.82342 -10.69252 -10.63461 -10.40664 -10.28639 -10.26183 -9.87934 -9.63488 -9.15343 -9.05702 -8.93305 -8.67625 -8.36304 -6.00370 -4.01833 2.19681 2.86796 3.31391 3.36928 3.37676 3.48467 4.44520 4.49732 4.56063 4.68963 4.96179 5.02510 5.17592 5.21830 5.34488 5.34991 5.44143 5.52717 5.53786 5.59093 5.62811 5.68266 5.69963 5.74739 5.82240 6.03319 6.16273 6.18099 6.22380 6.29908 6.31070 6.39180 6.55092 6.58442 6.62005 6.77920 6.87704 7.05782 7.06629 7.12633 7.63231 7.75899 7.79111 7.98220 8.39662 8.49205 9.02787 9.61231 11.11076 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.048086 B = 0.002816 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.149616 B = 9941.023594 C =10189.598514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.128 3.872 14 N -0.724 5.724 15 C 0.505 3.495 16 O -0.544 6.544 17 C -0.138 4.138 18 C -0.070 4.070 19 H 0.080 0.920 20 C -0.094 4.094 21 C -0.143 4.143 22 C -0.170 4.170 23 C -0.088 4.088 24 C -0.116 4.116 25 H 0.066 0.934 26 H 0.028 0.972 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.029 0.971 30 H 0.066 0.934 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.261 0.739 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.397 0.603 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.184 5.489 -21.872 22.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.005 3.995 14 N -0.375 5.375 15 C 0.291 3.709 16 O -0.422 6.422 17 C -0.178 4.178 18 C -0.089 4.089 19 H 0.099 0.901 20 C -0.131 4.131 21 C -0.161 4.161 22 C -0.188 4.188 23 C -0.125 4.125 24 C -0.154 4.154 25 H 0.085 0.915 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.232 0.768 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.589 4.653 -21.800 22.441 hybrid contribution -0.458 0.758 0.999 1.335 sum -3.047 5.412 -20.801 21.708 Atomic orbital electron populations 1.21758 0.95313 1.01126 1.00196 1.20898 0.95436 0.95833 0.95130 1.21757 1.00517 0.95920 1.00197 1.19086 0.96340 0.95214 0.89504 1.21146 1.31244 1.12084 0.90541 0.92328 1.25016 0.95321 0.95080 0.99086 1.69955 1.36882 1.23004 1.23558 0.86708 0.79139 0.79758 0.82669 1.20327 1.21392 1.20334 1.21602 0.98827 0.95989 0.83075 1.46257 1.53276 1.31955 1.06028 1.20644 0.80594 0.84849 0.84794 1.90664 1.38111 1.26569 1.86811 1.21775 1.02338 1.00685 0.93029 1.20938 0.95466 1.00361 0.92111 0.90143 1.20676 0.95150 1.01473 0.95762 1.22144 0.99377 0.99663 0.94911 1.21984 0.95847 1.02722 0.98254 1.20409 0.93834 1.00052 0.98230 1.21684 1.00292 0.99154 0.94241 0.91466 0.95253 0.93407 0.93405 0.95247 0.91472 0.96371 0.96372 0.92971 0.91937 0.91939 0.76762 0.89044 0.89115 0.91481 0.88809 0.88264 0.88383 0.91046 0.91350 0.91620 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.07 -1.36 0.54 -154.51 -0.08 -1.44 16 3 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.54 7.65 -34.44 -0.26 -13.80 16 6 H 0.06 1.48 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 9 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.13 2.24 4.56 -4.04 -0.02 2.22 16 14 N -0.72 -10.12 4.96 -60.29 -0.30 -10.42 16 15 C 0.51 7.09 7.59 -10.99 -0.08 7.00 16 16 O -0.54 -9.70 14.05 5.55 0.08 -9.62 16 17 C -0.14 -1.35 5.18 -27.89 -0.14 -1.49 16 18 C -0.07 -0.72 1.87 -90.40 -0.17 -0.89 16 19 H 0.08 0.98 7.94 -51.93 -0.41 0.56 16 20 C -0.09 -1.05 5.06 -28.13 -0.14 -1.20 16 21 C -0.14 -1.48 9.80 -35.85 -0.35 -1.83 16 22 C -0.17 -1.57 9.80 -35.90 -0.35 -1.92 16 23 C -0.09 -0.71 6.12 -28.18 -0.17 -0.88 16 24 C -0.12 -0.94 5.31 -26.51 -0.14 -1.08 16 25 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 26 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 30 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.40 4.64 6.16 -40.82 -0.25 4.39 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.74 8.10 -51.93 -0.42 0.31 16 39 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 40 H 0.09 1.30 6.25 -51.93 -0.32 0.97 16 41 H 0.10 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.10 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 LS Contribution 355.38 15.07 5.36 5.36 Total: -1.00 -30.32 355.38 -8.84 -39.15 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -8.16 Total: 1.96 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -1.53 Total: -16.86 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.44 Total: -36.11 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.32 -8.84 -39.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935993003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.444 kcal (2) G-P(sol) polarization free energy of solvation -30.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds