Wall clock time and date at job start Tue Mar 31 2020 01:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 C 1.50701 * 109.47212 * 300.00129 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 14 14 N 1.46507 * 109.47485 * 59.99555 * 13 2 1 15 15 C 1.34770 * 119.99912 * 179.97438 * 14 13 2 16 16 O 1.21286 * 120.00222 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00019 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47342 * 180.02562 * 17 15 14 19 19 H 1.08996 * 109.64121 * 55.00085 * 18 17 15 20 20 C 1.53029 * 109.64069 * 294.57876 * 18 17 15 21 21 C 1.50168 * 110.09350 * 191.09634 * 20 18 17 22 22 C 1.29438 * 124.14978 * 16.72199 * 21 20 18 23 23 C 1.50067 * 124.07612 * 359.75296 * 22 21 20 24 24 C 1.53024 * 110.14731 * 17.13710 * 23 22 21 25 25 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 30 30 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 31 31 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 33 33 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47103 * 179.97438 * 13 2 1 35 35 H 1.09001 * 109.47066 * 299.99881 * 13 2 1 36 36 H 0.96992 * 119.99570 * 0.02562 * 14 13 2 37 37 H 1.09002 * 109.47210 * 300.00400 * 17 15 14 38 38 H 1.09001 * 109.47122 * 60.00417 * 17 15 14 39 39 H 1.09002 * 109.35889 * 311.08659 * 20 18 17 40 40 H 1.09000 * 109.35588 * 70.67457 * 20 18 17 41 41 H 1.08000 * 117.88579 * 196.92464 * 21 20 18 42 42 H 1.07998 * 117.96239 * 179.74197 * 22 21 20 43 43 H 1.08999 * 109.36307 * 256.93136 * 23 22 21 44 44 H 1.09003 * 109.24667 * 137.27078 * 23 22 21 45 45 H 1.09003 * 109.64892 * 190.87677 * 24 23 22 46 46 H 1.08999 * 109.64057 * 70.24294 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5377 -0.0108 2.4797 6 1 0.9164 0.8670 2.3806 7 6 1.8704 -0.4822 3.7320 8 7 2.6265 -1.5515 3.8526 9 14 1.2471 0.3979 5.2571 10 1 -0.2380 0.3977 5.2567 11 1 1.7422 -0.3021 6.4697 12 1 1.7420 1.7981 5.2577 13 6 2.0401 -0.7211 -1.2492 14 7 1.5517 -0.0305 -2.4455 15 6 1.8777 -0.4906 -3.6695 16 8 2.5751 -1.4767 -3.7808 17 6 1.3759 0.2200 -4.9000 18 6 1.8858 -0.5012 -6.1492 19 1 1.5985 -1.5518 -6.1086 20 6 3.4101 -0.3871 -6.2228 21 6 3.8977 -0.8484 -7.5661 22 6 3.1407 -0.9811 -8.6076 23 6 1.6671 -0.6973 -8.6177 24 6 1.2851 0.1496 -7.4017 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 -0.7208 1.2495 32 1 1.6767 -1.7489 1.2492 33 1 2.8608 -1.8829 4.7336 34 1 3.1301 -0.7207 -1.2494 35 1 1.6767 -1.7488 -1.2493 36 1 0.9943 0.7583 -2.3564 37 1 0.2859 0.2201 -4.9004 38 1 1.7392 1.2477 -4.8996 39 1 3.7023 0.6522 -6.0727 40 1 3.8565 -1.0023 -5.4415 41 1 4.9459 -1.0875 -7.6682 42 1 3.5980 -1.3167 -9.5266 43 1 1.1177 -1.6383 -8.5895 44 1 1.4115 -0.1568 -9.5291 45 1 0.1998 0.1894 -7.3091 46 1 1.6833 1.1576 -7.5176 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935993003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:24 Heat of formation + Delta-G solvation = -80.562870 kcal Electronic energy + Delta-G solvation = -21929.999150 eV Core-core repulsion = 18817.408956 eV Total energy + Delta-G solvation = -3112.590194 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.08497 -39.39482 -38.38484 -35.20244 -34.00044 -33.55476 -31.57004 -29.36950 -28.64438 -27.94927 -26.96358 -24.83701 -23.99681 -22.29542 -21.14776 -19.78238 -18.83817 -18.36960 -17.81231 -17.00009 -16.65157 -16.46331 -16.35323 -15.39843 -15.28003 -15.04372 -14.67133 -14.41846 -14.28820 -13.93141 -13.85487 -13.75531 -13.45042 -13.15823 -12.92121 -12.82419 -12.74642 -12.58819 -12.37478 -12.31786 -12.21657 -11.99939 -11.60825 -11.51866 -11.46740 -11.09570 -10.97467 -10.88287 -10.56068 -10.50984 -9.99614 -9.80343 -8.14049 -6.22203 1.42442 1.44589 1.44693 1.51908 1.76385 2.32156 2.45999 3.20237 3.73565 3.80792 3.90001 4.00219 4.09452 4.16717 4.24282 4.31367 4.46403 4.51725 4.61773 4.70647 4.73054 4.76920 4.80836 4.82379 4.86679 4.97904 4.99582 5.07806 5.11242 5.13421 5.15745 5.27031 5.41019 5.43778 5.50576 5.50627 5.54513 5.55399 5.61033 5.80982 5.81923 5.89875 6.11884 6.30204 6.69312 6.93167 7.39314 7.45720 8.98401 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.048086 B = 0.002816 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.149616 B = 9941.023594 C =10189.598514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.121 4.121 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.074 0.926 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.959 3.041 10 H -0.266 1.266 11 H -0.292 1.292 12 H -0.266 1.266 13 C 0.142 3.858 14 N -0.712 5.712 15 C 0.501 3.499 16 O -0.588 6.588 17 C -0.127 4.127 18 C -0.070 4.070 19 H 0.055 0.945 20 C -0.092 4.092 21 C -0.168 4.168 22 C -0.162 4.162 23 C -0.093 4.093 24 C -0.110 4.110 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.055 0.945 31 H -0.016 1.016 32 H -0.016 1.016 33 H 0.259 0.741 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.414 0.586 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.531 8.360 -23.688 25.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.001 3.999 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.218 1.218 12 H -0.191 1.191 13 C 0.018 3.982 14 N -0.365 5.365 15 C 0.289 3.711 16 O -0.468 6.468 17 C -0.167 4.167 18 C -0.089 4.089 19 H 0.074 0.926 20 C -0.129 4.129 21 C -0.186 4.186 22 C -0.180 4.180 23 C -0.130 4.130 24 C -0.147 4.147 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.002 0.998 32 H 0.002 0.998 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.252 0.748 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.115 0.885 42 H 0.127 0.873 43 H 0.091 0.909 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.966 7.566 -23.636 25.310 hybrid contribution 0.324 -0.209 1.488 1.537 sum -4.642 7.357 -22.148 23.796 Atomic orbital electron populations 1.21691 0.93494 1.00877 1.01768 1.20697 0.96758 0.96299 0.92720 1.21691 0.99781 0.94594 1.01760 1.18980 0.94160 0.94158 0.92568 1.21570 1.30451 1.12115 0.91043 0.90835 1.25977 0.95675 0.95868 1.02816 1.70122 1.38801 1.25029 1.24157 0.85582 0.78992 0.78749 0.78217 1.19055 1.21770 1.19077 1.21137 0.97474 0.95250 0.84380 1.46048 1.53390 1.32192 1.04900 1.21533 0.79524 0.84314 0.85718 1.90667 1.40018 1.28770 1.87393 1.21823 1.04002 1.01072 0.89773 1.20916 0.94725 0.99403 0.93821 0.92635 1.20593 0.96060 1.01129 0.95152 1.22175 0.99761 1.01589 0.95090 1.22261 0.96701 1.00893 0.98164 1.20515 0.92693 1.00516 0.99282 1.21665 1.01331 0.99160 0.92533 0.92603 0.90848 0.94641 0.94659 0.90855 0.92608 0.99803 0.99794 0.93183 0.94093 0.94087 0.74835 0.86000 0.86357 0.90758 0.92407 0.88487 0.87262 0.90929 0.89340 0.89643 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.98 8.05 71.98 0.58 -3.40 16 2 C -0.06 -2.41 0.54 -52.18 -0.03 -2.43 16 3 C -0.12 -3.98 8.05 71.98 0.58 -3.40 16 4 C 0.04 1.99 4.04 29.85 0.12 2.12 16 5 C -0.51 -27.55 7.65 25.60 0.20 -27.35 16 6 H 0.07 3.66 5.68 -2.91 -0.02 3.64 16 7 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 8 N -0.94 -57.59 13.29 21.45 0.28 -57.30 16 9 Si 0.96 43.54 29.54 68.60 2.03 45.57 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 13 C 0.14 5.07 4.56 86.38 0.39 5.47 16 14 N -0.71 -18.61 4.96 -463.06 -2.30 -20.91 16 15 C 0.50 13.45 7.59 87.66 0.66 14.11 16 16 O -0.59 -21.59 14.05 -3.05 -0.04 -21.63 16 17 C -0.13 -2.07 5.18 29.85 0.15 -1.91 16 18 C -0.07 -1.31 1.87 -10.65 -0.02 -1.33 16 19 H 0.06 1.32 7.94 -2.39 -0.02 1.30 16 20 C -0.09 -2.05 5.06 29.69 0.15 -1.90 16 21 C -0.17 -3.43 9.80 27.07 0.27 -3.16 16 22 C -0.16 -2.75 9.80 27.04 0.27 -2.48 16 23 C -0.09 -1.24 6.12 29.66 0.18 -1.06 16 24 C -0.11 -1.39 5.31 30.74 0.16 -1.22 16 25 H 0.05 1.97 6.62 -2.39 -0.02 1.95 16 26 H 0.07 1.76 6.86 -2.39 -0.02 1.74 16 27 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.07 1.76 6.86 -2.39 -0.02 1.74 16 30 H 0.05 1.97 6.62 -2.39 -0.02 1.96 16 31 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 32 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 33 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 34 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.41 7.98 6.16 -92.71 -0.57 7.41 16 37 H 0.12 1.32 8.14 -2.39 -0.02 1.31 16 38 H 0.12 1.36 8.10 -2.39 -0.02 1.34 16 39 H 0.07 1.47 8.07 -2.39 -0.02 1.45 16 40 H 0.06 1.70 6.25 -2.39 -0.01 1.68 16 41 H 0.10 1.92 8.06 -2.91 -0.02 1.90 16 42 H 0.11 1.57 8.06 -2.91 -0.02 1.54 16 43 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.07 0.84 8.13 -2.39 -0.02 0.82 16 Total: -1.00 -70.34 355.38 4.47 -65.88 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.36 Total: 16.28 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 4.13 Total: -27.88 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -2.01 Total: -78.21 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.04 Total: -21.63 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -70.34 4.47 -65.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935993003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.686 kcal (2) G-P(sol) polarization free energy of solvation -70.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds