Wall clock time and date at job start Tue Mar 31 2020 02:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46906 * 2 1 4 4 H 1.08998 * 109.47376 * 54.99818 * 3 2 1 5 5 C 1.50701 * 109.46905 * 175.00023 * 3 2 1 6 6 H 1.08002 * 119.99784 * 119.99853 * 5 3 2 7 7 C 1.37871 * 120.00462 * 299.99906 * 5 3 2 8 8 N 1.31516 * 119.99592 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00575 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47044 * 89.99936 * 9 7 5 11 11 H 1.48492 * 109.47089 * 209.99994 * 9 7 5 12 12 H 1.48496 * 109.46631 * 329.99858 * 9 7 5 13 13 N 1.46499 * 109.46939 * 294.99588 * 3 2 1 14 14 C 1.34782 * 119.99733 * 85.00586 * 13 3 2 15 15 O 1.21285 * 120.00017 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00270 * 180.02562 * 14 13 3 17 17 C 1.55919 * 115.92377 * 61.00511 * 16 14 13 18 18 C 1.54585 * 104.64482 * 160.03585 * 17 16 14 19 19 C 1.55927 * 104.64157 * 0.02562 * 18 17 16 20 20 C 1.55926 * 104.49734 * 70.28011 * 19 18 17 21 21 C 1.55930 * 115.91900 * 297.93429 * 16 14 13 22 22 C 1.56948 * 100.65549 * 326.22275 * 19 18 17 23 23 C 1.52998 * 112.02943 * 170.30260 * 22 19 18 24 24 C 1.53002 * 112.02370 * 296.82902 * 22 19 18 25 25 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47506 * 299.99877 * 1 2 3 27 27 H 1.09000 * 109.47369 * 60.00113 * 1 2 3 28 28 H 1.08998 * 109.47021 * 239.99943 * 2 1 3 29 29 H 1.09000 * 109.47369 * 119.99887 * 2 1 3 30 30 H 0.97001 * 119.99993 * 180.02562 * 8 7 5 31 31 H 0.96996 * 120.00916 * 264.99940 * 13 3 2 32 32 H 1.09001 * 110.40387 * 41.24741 * 17 16 14 33 33 H 1.08999 * 110.40809 * 278.82712 * 17 16 14 34 34 H 1.08999 * 110.40122 * 241.21400 * 18 17 16 35 35 H 1.08994 * 110.50342 * 118.84258 * 18 17 16 36 36 H 1.09004 * 115.92381 * 199.15502 * 19 18 17 37 37 H 1.09001 * 110.40654 * 48.50944 * 20 19 18 38 38 H 1.09003 * 110.40731 * 170.93140 * 20 19 18 39 39 H 1.09003 * 110.40468 * 317.95295 * 21 16 14 40 40 H 1.09003 * 110.40334 * 80.36607 * 21 16 14 41 41 H 1.08997 * 109.46911 * 61.45877 * 23 22 19 42 42 H 1.09009 * 109.46829 * 181.45148 * 23 22 19 43 43 H 1.09001 * 109.47382 * 301.45059 * 23 22 19 44 44 H 1.08991 * 109.47374 * 58.54240 * 24 22 19 45 45 H 1.08999 * 109.47081 * 178.54641 * 24 22 19 46 46 H 1.09004 * 109.47072 * 298.54184 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3367 2.1728 9 14 6.0049 0.8814 1.3817 10 1 6.4416 2.1143 2.0848 11 1 6.4395 -0.3096 2.1548 12 1 6.6135 0.8417 0.0278 13 7 1.6524 2.0975 -1.2519 14 6 0.4350 2.6644 -1.3670 15 8 -0.3397 2.6320 -0.4344 16 6 0.0361 3.3376 -2.6549 17 6 0.0055 2.4261 -3.9195 18 6 -0.8919 3.1829 -4.9252 19 6 -1.3186 4.4807 -4.1736 20 6 -0.0142 5.3311 -4.0919 21 6 0.9001 4.5644 -3.0788 22 6 -1.4094 3.9466 -2.7006 23 6 -1.5868 5.0805 -1.6889 24 6 -2.4887 2.8733 -2.5451 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8293 -0.0611 2.9498 31 1 2.2718 2.1232 -1.9978 32 1 -0.4286 1.4558 -3.6782 33 1 1.0102 2.3037 -4.3241 34 1 -1.7673 2.5847 -5.1782 35 1 -0.3303 3.4326 -5.8253 36 1 -2.1970 4.9924 -4.5671 37 1 0.4682 5.3820 -5.0680 38 1 -0.2360 6.3329 -3.7240 39 1 1.1192 5.1917 -2.2147 40 1 1.8241 4.2329 -3.5527 41 1 -2.5179 5.6085 -1.8946 42 1 -1.6190 4.6664 -0.6810 43 1 -0.7500 5.7742 -1.7701 44 1 -2.2748 2.0427 -3.2176 45 1 -2.4984 2.5143 -1.5159 46 1 -3.4619 3.2984 -2.7908 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123687773.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:35 Heat of formation + Delta-G solvation = -53.347495 kcal Electronic energy + Delta-G solvation = -23948.854956 eV Core-core repulsion = 20837.444910 eV Total energy + Delta-G solvation = -3111.410047 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.08915 -38.17375 -34.93175 -32.50529 -31.71211 -31.03516 -30.91394 -29.35751 -26.79892 -26.31928 -24.14273 -23.03142 -22.13464 -21.21994 -19.51205 -18.79417 -18.28448 -16.62967 -15.81699 -15.52006 -15.23959 -14.90990 -14.47418 -14.10846 -13.67852 -13.49201 -12.66041 -12.60878 -12.45534 -12.33181 -12.07172 -11.90871 -11.74628 -11.66184 -11.51467 -11.30549 -11.21531 -11.05693 -10.96068 -10.88796 -10.80598 -10.39275 -10.29509 -10.24762 -10.10064 -9.84783 -9.71313 -9.57568 -9.01361 -8.73794 -8.45621 -7.72597 -6.10005 -4.19051 3.25253 3.32084 3.33711 3.46262 4.14528 4.38379 4.41458 4.58011 4.61901 5.13818 5.20784 5.21952 5.24443 5.42132 5.46456 5.47999 5.51953 5.63162 5.68223 5.82187 5.92586 5.94479 5.98698 6.02348 6.09101 6.11272 6.28406 6.30518 6.35398 6.36466 6.42541 6.44130 6.50238 6.67907 6.70172 6.73363 7.08476 7.24339 7.41721 7.54340 7.65977 7.79143 7.95021 8.22202 8.76494 8.83615 9.25455 9.49296 10.95256 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.025150 B = 0.005186 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.038580 B = 5397.842048 C = 5815.295637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.707 5.707 14 C 0.532 3.468 15 O -0.542 6.542 16 C -0.092 4.092 17 C -0.109 4.109 18 C -0.116 4.116 19 C -0.100 4.100 20 C -0.116 4.116 21 C -0.108 4.108 22 C -0.035 4.035 23 C -0.138 4.138 24 C -0.138 4.138 25 H 0.020 0.980 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.029 0.971 29 H 0.098 0.902 30 H 0.264 0.736 31 H 0.386 0.614 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.047 0.953 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.070 0.930 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.697 6.712 -13.306 16.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.354 5.354 14 C 0.316 3.684 15 O -0.421 6.421 16 C -0.095 4.095 17 C -0.146 4.146 18 C -0.154 4.154 19 C -0.118 4.118 20 C -0.153 4.153 21 C -0.146 4.146 22 C -0.036 4.036 23 C -0.195 4.195 24 C -0.195 4.195 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.218 0.782 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.197 6.563 -12.426 16.269 hybrid contribution 1.444 -0.098 -0.275 1.473 sum -6.753 6.464 -12.701 15.771 Atomic orbital electron populations 1.21835 0.98362 0.97885 1.01283 1.21922 0.92608 0.99917 1.02111 1.18741 0.94029 0.89107 0.81180 0.93425 1.21243 0.90864 1.38800 1.06169 0.92218 1.24877 0.98472 0.94860 0.95447 1.69898 1.35050 1.37727 1.09334 0.86484 0.85059 0.77616 0.78155 1.20607 1.21103 1.19896 1.46468 1.14695 1.55939 1.18267 1.19479 0.82511 0.78766 0.87607 1.90627 1.51484 1.59798 1.40158 1.23044 0.96858 0.96102 0.93519 1.22562 1.00008 0.98213 0.93853 1.22582 0.99014 0.96326 0.97433 1.23610 0.97051 0.95631 0.95501 1.22908 0.95329 0.98357 0.98748 1.22903 0.97257 0.95662 0.98790 1.22181 0.92798 0.95029 0.93560 1.21740 1.00542 0.97229 0.99999 1.21744 0.96780 0.97795 1.03186 0.96063 0.93209 0.94131 0.95194 0.88429 0.92629 0.78235 0.91479 0.91464 0.91876 0.91909 0.88627 0.91963 0.91815 0.91386 0.91274 0.93405 0.91070 0.92708 0.92748 0.91071 0.93388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.79 2.24 -69.08 -0.15 6.64 16 4 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -14.04 8.73 -34.44 -0.30 -14.34 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.78 11.29 55.43 0.63 -24.15 16 9 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.71 -14.57 5.02 -54.93 -0.28 -14.84 16 14 C 0.53 10.30 5.56 -10.98 -0.06 10.24 16 15 O -0.54 -12.15 11.19 5.55 0.06 -12.08 16 16 C -0.09 -1.35 0.72 -150.42 -0.11 -1.46 16 17 C -0.11 -1.38 5.20 -24.34 -0.13 -1.51 16 18 C -0.12 -1.22 5.55 -24.33 -0.13 -1.35 16 19 C -0.10 -1.07 4.51 -85.35 -0.38 -1.46 16 20 C -0.12 -1.23 5.58 -23.27 -0.13 -1.36 16 21 C -0.11 -1.40 5.35 -23.27 -0.12 -1.53 16 22 C -0.04 -0.47 0.56 -150.25 -0.08 -0.56 16 23 C -0.14 -1.91 8.34 37.16 0.31 -1.60 16 24 C -0.14 -1.90 8.33 37.16 0.31 -1.59 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 27 H 0.04 0.88 5.64 -51.93 -0.29 0.58 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.39 7.15 8.54 -40.82 -0.35 6.80 16 32 H 0.07 0.92 7.29 -51.93 -0.38 0.54 16 33 H 0.07 0.80 7.82 -51.93 -0.41 0.40 16 34 H 0.06 0.63 7.52 -51.93 -0.39 0.24 16 35 H 0.06 0.59 7.84 -51.93 -0.41 0.18 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.59 7.84 -51.93 -0.41 0.18 16 38 H 0.06 0.64 7.52 -51.93 -0.39 0.25 16 39 H 0.07 0.96 7.32 -51.93 -0.38 0.58 16 40 H 0.07 0.84 7.82 -51.93 -0.41 0.43 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 1.18 7.06 -51.92 -0.37 0.81 16 43 H 0.05 0.73 5.45 -51.93 -0.28 0.45 16 44 H 0.05 0.72 5.43 -51.93 -0.28 0.43 16 45 H 0.07 1.17 7.06 -51.93 -0.37 0.80 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 336.57 15.07 5.07 5.07 Total: -1.00 -28.48 336.57 -8.32 -36.80 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -7.87 Total: 7.72 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -0.91 Total: -14.15 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.35 Total: -38.99 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.06 Total: -12.08 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.48 -8.32 -36.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123687773.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.550 kcal (2) G-P(sol) polarization free energy of solvation -28.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds