Wall clock time and date at job start Tue Mar 31 2020 02:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46854 * 90.00146 * 9 7 5 11 11 H 1.48502 * 109.47180 * 209.99800 * 9 7 5 12 12 H 1.48497 * 109.47188 * 330.00489 * 9 7 5 13 13 N 1.46497 * 109.47195 * 64.99866 * 3 2 1 14 14 C 1.34777 * 120.00660 * 275.00187 * 13 3 2 15 15 O 1.21281 * 119.99633 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00373 * 179.97438 * 14 13 3 17 17 C 1.55928 * 115.91686 * 62.06453 * 16 14 13 18 18 C 1.56535 * 103.72308 * 160.30369 * 17 16 14 19 19 C 1.55930 * 104.81990 * 0.39802 * 18 17 16 20 20 C 1.55930 * 104.49588 * 70.01380 * 19 18 17 21 21 C 1.54581 * 104.64177 * 289.71471 * 20 19 18 22 22 C 1.56944 * 100.65438 * 325.95081 * 19 18 17 23 23 C 1.52991 * 112.71189 * 296.60117 * 22 19 18 24 24 C 1.53002 * 111.34186 * 170.08384 * 22 19 18 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 30 30 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 31 31 H 0.97010 * 119.99804 * 95.00047 * 13 3 2 32 32 H 1.08999 * 110.40313 * 278.82097 * 17 16 14 33 33 H 1.08994 * 110.40522 * 41.24220 * 17 16 14 34 34 H 1.09003 * 110.54313 * 241.43702 * 18 17 16 35 35 H 1.08996 * 110.08797 * 119.13423 * 18 17 16 36 36 H 1.09000 * 115.91705 * 198.88770 * 19 18 17 37 37 H 1.09000 * 110.39871 * 170.92706 * 20 19 18 38 38 H 1.08995 * 110.40339 * 48.50743 * 20 19 18 39 39 H 1.09000 * 110.40731 * 241.21296 * 21 20 19 40 40 H 1.08998 * 110.40095 * 118.78984 * 21 20 19 41 41 H 1.09003 * 109.47304 * 167.04582 * 23 22 19 42 42 H 1.08993 * 109.47363 * 287.04716 * 23 22 19 43 43 H 1.09002 * 109.46789 * 47.04910 * 23 22 19 44 44 H 1.09003 * 109.47391 * 313.70235 * 24 22 19 45 45 H 1.08999 * 109.46758 * 73.69766 * 24 22 19 46 46 H 1.08996 * 109.47165 * 193.69663 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5549 -0.3500 -0.7603 11 1 6.3828 0.9226 -2.8175 12 1 6.5568 2.0740 -0.6903 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0362 3.3376 2.6549 17 6 0.9004 4.5645 3.0787 18 6 -0.0147 5.3312 4.0911 19 6 -1.3188 4.4805 4.1734 20 6 -0.8916 3.1830 4.9253 21 6 0.0057 2.4261 3.9196 22 6 -1.4099 3.9459 2.7007 23 6 -1.5938 5.0667 1.6757 24 6 -2.4893 2.8701 2.5646 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.8292 -0.0602 -2.9503 31 1 2.2720 2.1231 1.9978 32 1 1.8177 4.2332 3.5654 33 1 1.1313 5.1841 2.2122 34 1 -0.2370 6.3329 3.7230 35 1 0.4678 5.3825 5.0671 36 1 -2.1972 4.9920 4.5670 37 1 -1.7670 2.5849 5.1784 38 1 -0.3281 3.4327 5.8242 39 1 -0.4284 1.4558 3.6783 40 1 1.0104 2.3038 4.3241 41 1 -1.4214 4.6744 0.6734 42 1 -2.6089 5.4578 1.7431 43 1 -0.8819 5.8664 1.8802 44 1 -2.3950 2.1552 3.3821 45 1 -3.4738 3.3365 2.6016 46 1 -2.3682 2.3521 1.6132 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123687774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:39 Heat of formation + Delta-G solvation = -53.271972 kcal Electronic energy + Delta-G solvation = -23950.538536 eV Core-core repulsion = 20839.131764 eV Total energy + Delta-G solvation = -3111.406772 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.09073 -38.18131 -34.94058 -32.51371 -31.70890 -31.03242 -30.90930 -29.35821 -26.80161 -26.31447 -24.13869 -23.03561 -22.13472 -21.22764 -19.51374 -18.78946 -18.28588 -16.62964 -15.81786 -15.51660 -15.24832 -14.90248 -14.47521 -14.13857 -13.67651 -13.48262 -12.66252 -12.61396 -12.48956 -12.32110 -12.06001 -11.83155 -11.75365 -11.68653 -11.54064 -11.28941 -11.21215 -11.07480 -10.98494 -10.89036 -10.78090 -10.38329 -10.29466 -10.25007 -10.09989 -9.84918 -9.70762 -9.58293 -9.00905 -8.73207 -8.46266 -7.72876 -6.10120 -4.19193 3.24889 3.31996 3.34009 3.45606 4.14351 4.38417 4.41883 4.58075 4.62004 5.13839 5.20797 5.22211 5.23977 5.40741 5.46866 5.48030 5.52281 5.63595 5.67591 5.81567 5.93882 5.96357 5.99164 6.00944 6.10540 6.11364 6.28409 6.30318 6.35195 6.36697 6.42381 6.45070 6.49877 6.67583 6.70856 6.74516 7.08319 7.24067 7.41450 7.54025 7.65805 7.78800 7.94816 8.21981 8.76139 8.83309 9.24953 9.49099 10.95151 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.025158 B = 0.005186 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.707445 B = 5398.263711 C = 5815.292228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.706 5.706 14 C 0.532 3.468 15 O -0.542 6.542 16 C -0.092 4.092 17 C -0.108 4.108 18 C -0.116 4.116 19 C -0.100 4.100 20 C -0.116 4.116 21 C -0.108 4.108 22 C -0.035 4.035 23 C -0.140 4.140 24 C -0.141 4.141 25 H 0.020 0.980 26 H 0.040 0.960 27 H 0.049 0.951 28 H 0.029 0.971 29 H 0.098 0.902 30 H 0.264 0.736 31 H 0.386 0.614 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.047 0.953 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.048 0.952 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.667 6.692 13.296 16.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.353 5.353 14 C 0.317 3.683 15 O -0.421 6.421 16 C -0.096 4.096 17 C -0.146 4.146 18 C -0.154 4.154 19 C -0.118 4.118 20 C -0.154 4.154 21 C -0.146 4.146 22 C -0.035 4.035 23 C -0.197 4.197 24 C -0.198 4.198 25 H 0.039 0.961 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.218 0.782 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.165 6.550 12.412 16.237 hybrid contribution 1.435 -0.116 0.287 1.468 sum -6.730 6.434 12.700 15.747 Atomic orbital electron populations 1.21836 0.98365 0.97892 1.01279 1.21924 0.92609 0.99917 1.02115 1.18743 0.94036 0.89104 0.81181 0.93411 1.21244 0.90857 1.38811 1.06168 0.92214 1.24877 0.98478 0.94887 0.95417 1.69896 1.35044 1.37732 1.09339 0.86486 0.85072 0.78408 0.77352 1.20585 1.21099 1.19906 1.46475 1.14692 1.55895 1.18272 1.19484 0.82505 0.78749 0.87607 1.90622 1.51471 1.59828 1.40178 1.23039 0.96901 0.96102 0.93510 1.22890 0.97234 0.95691 0.98742 1.22918 0.95353 0.98378 0.98729 1.23606 0.97028 0.95639 0.95543 1.22599 0.98994 0.96330 0.97459 1.22557 1.00000 0.98214 0.93853 1.22178 0.92727 0.95066 0.93538 1.21750 1.00442 0.97254 1.00218 1.21798 0.96901 0.98149 1.02981 0.96055 0.94145 0.93193 0.95195 0.88427 0.92625 0.78226 0.91374 0.91329 0.91809 0.91959 0.88620 0.91815 0.91894 0.91505 0.91478 0.90735 0.93372 0.92830 0.92764 0.93328 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.78 2.24 -69.09 -0.15 6.63 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.03 8.73 -34.44 -0.30 -14.33 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.76 11.29 55.43 0.63 -24.14 16 9 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.71 -14.54 5.02 -54.93 -0.28 -14.82 16 14 C 0.53 10.29 5.56 -10.99 -0.06 10.23 16 15 O -0.54 -12.13 10.84 5.56 0.06 -12.07 16 16 C -0.09 -1.36 0.72 -150.39 -0.11 -1.46 16 17 C -0.11 -1.39 5.34 -23.26 -0.12 -1.52 16 18 C -0.12 -1.23 5.59 -23.26 -0.13 -1.36 16 19 C -0.10 -1.08 4.51 -85.35 -0.38 -1.46 16 20 C -0.12 -1.22 5.54 -24.33 -0.13 -1.36 16 21 C -0.11 -1.38 5.20 -24.34 -0.13 -1.51 16 22 C -0.03 -0.46 0.56 -150.23 -0.08 -0.55 16 23 C -0.14 -1.94 8.50 37.15 0.32 -1.63 16 24 C -0.14 -1.94 8.43 37.16 0.31 -1.63 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 27 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 31 H 0.39 7.14 8.54 -40.82 -0.35 6.79 16 32 H 0.07 0.83 7.80 -51.93 -0.41 0.42 16 33 H 0.07 0.97 7.65 -51.93 -0.40 0.57 16 34 H 0.06 0.65 7.31 -51.93 -0.38 0.27 16 35 H 0.06 0.59 7.83 -51.93 -0.41 0.18 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.64 7.20 -51.93 -0.37 0.26 16 38 H 0.06 0.59 7.83 -51.93 -0.41 0.18 16 39 H 0.07 0.92 7.55 -51.93 -0.39 0.53 16 40 H 0.07 0.80 7.80 -51.93 -0.41 0.39 16 41 H 0.07 1.26 6.66 -51.93 -0.35 0.91 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.69 5.59 -51.93 -0.29 0.40 16 44 H 0.05 0.69 5.35 -51.93 -0.28 0.41 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 1.20 6.79 -51.93 -0.35 0.85 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -28.43 335.88 -8.29 -36.72 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -7.84 Total: 7.85 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -0.90 Total: -14.23 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.35 Total: -38.96 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.06 Total: -12.07 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.43 -8.29 -36.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123687774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.550 kcal (2) G-P(sol) polarization free energy of solvation -28.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds