Wall clock time and date at job start Tue Mar 31 2020 02:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46854 * 90.00146 * 9 7 5 11 11 H 1.48502 * 109.47180 * 209.99800 * 9 7 5 12 12 H 1.48497 * 109.47188 * 330.00489 * 9 7 5 13 13 N 1.46497 * 109.47195 * 64.99866 * 3 2 1 14 14 C 1.34777 * 120.00660 * 275.00187 * 13 3 2 15 15 O 1.21281 * 119.99633 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00373 * 179.97438 * 14 13 3 17 17 C 1.55928 * 115.91686 * 62.06453 * 16 14 13 18 18 C 1.56535 * 103.72308 * 160.30369 * 17 16 14 19 19 C 1.55930 * 104.81990 * 0.39802 * 18 17 16 20 20 C 1.55930 * 104.49588 * 70.01380 * 19 18 17 21 21 C 1.54581 * 104.64177 * 289.71471 * 20 19 18 22 22 C 1.56944 * 100.65438 * 325.95081 * 19 18 17 23 23 C 1.52991 * 112.71189 * 296.60117 * 22 19 18 24 24 C 1.53002 * 111.34186 * 170.08384 * 22 19 18 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 30 30 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 31 31 H 0.97010 * 119.99804 * 95.00047 * 13 3 2 32 32 H 1.08999 * 110.40313 * 278.82097 * 17 16 14 33 33 H 1.08994 * 110.40522 * 41.24220 * 17 16 14 34 34 H 1.09003 * 110.54313 * 241.43702 * 18 17 16 35 35 H 1.08996 * 110.08797 * 119.13423 * 18 17 16 36 36 H 1.09000 * 115.91705 * 198.88770 * 19 18 17 37 37 H 1.09000 * 110.39871 * 170.92706 * 20 19 18 38 38 H 1.08995 * 110.40339 * 48.50743 * 20 19 18 39 39 H 1.09000 * 110.40731 * 241.21296 * 21 20 19 40 40 H 1.08998 * 110.40095 * 118.78984 * 21 20 19 41 41 H 1.09003 * 109.47304 * 167.04582 * 23 22 19 42 42 H 1.08993 * 109.47363 * 287.04716 * 23 22 19 43 43 H 1.09002 * 109.46789 * 47.04910 * 23 22 19 44 44 H 1.09003 * 109.47391 * 313.70235 * 24 22 19 45 45 H 1.08999 * 109.46758 * 73.69766 * 24 22 19 46 46 H 1.08996 * 109.47165 * 193.69663 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5549 -0.3500 -0.7603 11 1 6.3828 0.9226 -2.8175 12 1 6.5568 2.0740 -0.6903 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0362 3.3376 2.6549 17 6 0.9004 4.5645 3.0787 18 6 -0.0147 5.3312 4.0911 19 6 -1.3188 4.4805 4.1734 20 6 -0.8916 3.1830 4.9253 21 6 0.0057 2.4261 3.9196 22 6 -1.4099 3.9459 2.7007 23 6 -1.5938 5.0667 1.6757 24 6 -2.4893 2.8701 2.5646 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.8292 -0.0602 -2.9503 31 1 2.2720 2.1231 1.9978 32 1 1.8177 4.2332 3.5654 33 1 1.1313 5.1841 2.2122 34 1 -0.2370 6.3329 3.7230 35 1 0.4678 5.3825 5.0671 36 1 -2.1972 4.9920 4.5670 37 1 -1.7670 2.5849 5.1784 38 1 -0.3281 3.4327 5.8242 39 1 -0.4284 1.4558 3.6783 40 1 1.0104 2.3038 4.3241 41 1 -1.4214 4.6744 0.6734 42 1 -2.6089 5.4578 1.7431 43 1 -0.8819 5.8664 1.8802 44 1 -2.3950 2.1552 3.3821 45 1 -3.4738 3.3365 2.6016 46 1 -2.3682 2.3521 1.6132 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123687774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:38 Heat of formation + Delta-G solvation = -69.243578 kcal Electronic energy + Delta-G solvation = -23951.231117 eV Core-core repulsion = 20839.131764 eV Total energy + Delta-G solvation = -3112.099352 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.20275 -39.76799 -36.81475 -34.33297 -33.12159 -32.56771 -31.89199 -30.59340 -28.71789 -27.39853 -25.37859 -24.84626 -23.03758 -22.77995 -21.31259 -20.13962 -19.50058 -18.25527 -17.25302 -17.12910 -16.50042 -16.24905 -16.14618 -15.55820 -15.21777 -14.71166 -14.52955 -13.98483 -13.64833 -13.52516 -13.47669 -13.31452 -13.14704 -12.97323 -12.88441 -12.74919 -12.71162 -12.66075 -12.45373 -12.16527 -12.07096 -12.00120 -11.74361 -11.59948 -11.42684 -11.25928 -11.04643 -10.78253 -10.72389 -10.56142 -10.27348 -9.54572 -8.16257 -6.33602 1.43140 1.43827 1.54249 1.94138 2.36687 2.73556 3.12889 3.37189 3.56844 3.62065 4.11114 4.22878 4.25369 4.31360 4.47590 4.53407 4.54811 4.56105 4.57449 4.59837 4.64644 4.70395 4.78334 4.89099 4.97218 5.05093 5.05803 5.11108 5.12416 5.21691 5.23705 5.26186 5.27696 5.32034 5.44002 5.44395 5.51131 5.57096 5.60089 5.62930 5.70226 5.80591 5.96711 6.18362 6.75383 7.09771 7.34396 7.69602 8.89034 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.025158 B = 0.005186 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.707445 B = 5398.263711 C = 5815.292228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.281 3.719 4 H -0.005 1.005 5 C -0.547 4.547 6 H 0.069 0.931 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.706 5.706 14 C 0.527 3.473 15 O -0.578 6.578 16 C -0.100 4.100 17 C -0.108 4.108 18 C -0.109 4.109 19 C -0.085 4.085 20 C -0.109 4.109 21 C -0.107 4.107 22 C -0.042 4.042 23 C -0.136 4.136 24 C -0.137 4.137 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.024 0.976 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.264 0.736 31 H 0.398 0.602 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.121 0.879 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.077 0.923 41 H 0.032 0.968 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.370 7.663 16.715 19.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.012 0.988 5 C -0.585 4.585 6 H 0.087 0.913 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.190 1.190 13 N -0.354 5.354 14 C 0.314 3.686 15 O -0.459 6.459 16 C -0.103 4.103 17 C -0.146 4.146 18 C -0.146 4.146 19 C -0.103 4.103 20 C -0.147 4.147 21 C -0.145 4.145 22 C -0.043 4.043 23 C -0.193 4.193 24 C -0.195 4.195 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.232 0.768 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.139 0.861 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.051 0.949 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.872 7.533 15.870 19.251 hybrid contribution 1.293 -0.411 -0.853 1.603 sum -6.580 7.123 15.017 17.875 Atomic orbital electron populations 1.21654 0.96995 0.98908 1.00232 1.21764 0.93713 0.99310 1.01028 1.18292 0.93447 0.89011 0.81521 0.98754 1.21578 0.91562 1.38779 1.06586 0.91323 1.25764 1.03261 0.94410 0.95009 1.70053 1.37027 1.38463 1.09864 0.85394 0.79218 0.78863 0.77153 1.19625 1.21239 1.18965 1.46271 1.15742 1.56228 1.17166 1.20380 0.81345 0.77836 0.89065 1.90611 1.52306 1.60841 1.42113 1.22977 0.98431 0.97217 0.91659 1.22929 0.98033 0.94721 0.98904 1.22915 0.94635 0.98133 0.98907 1.23628 0.98029 0.95882 0.92762 1.22600 0.99050 0.95733 0.97270 1.22590 1.01274 0.97347 0.93253 1.22284 0.91552 0.94714 0.95710 1.21698 1.01745 0.97675 0.98219 1.21751 0.98060 0.98423 1.01216 0.93836 0.93665 0.95722 0.94324 0.91179 0.92651 0.76837 0.90405 0.93366 0.91088 0.89596 0.86131 0.90881 0.89564 0.93024 0.90474 0.94879 0.91619 0.91991 0.91594 0.91670 0.94906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 8.51 71.98 0.61 -4.99 16 2 C -0.12 -6.02 5.45 30.59 0.17 -5.85 16 3 C 0.28 14.70 2.24 44.24 0.10 14.80 16 4 H -0.01 -0.34 7.58 -2.39 -0.02 -0.36 16 5 C -0.55 -29.42 8.73 25.60 0.22 -29.20 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.02 0.85 5.29 84.65 0.45 1.29 16 8 N -0.92 -53.18 11.29 21.45 0.24 -52.93 16 9 Si 0.97 42.57 29.54 68.60 2.03 44.60 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 13 N -0.71 -29.94 5.02 -446.10 -2.24 -32.18 16 14 C 0.53 21.10 5.56 87.66 0.49 21.59 16 15 O -0.58 -27.58 10.84 -3.03 -0.03 -27.61 16 16 C -0.10 -2.86 0.72 -49.51 -0.04 -2.89 16 17 C -0.11 -2.60 5.34 32.84 0.18 -2.42 16 18 C -0.11 -1.87 5.59 32.84 0.18 -1.68 16 19 C -0.09 -1.48 4.51 -7.38 -0.03 -1.51 16 20 C -0.11 -1.82 5.54 32.15 0.18 -1.64 16 21 C -0.11 -2.47 5.20 32.15 0.17 -2.30 16 22 C -0.04 -1.07 0.56 -49.41 -0.03 -1.10 16 23 C -0.14 -3.75 8.50 71.98 0.61 -3.14 16 24 C -0.14 -3.66 8.43 71.98 0.61 -3.06 16 25 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.04 2.02 5.64 -2.39 -0.01 2.01 16 27 H 0.02 1.22 7.85 -2.39 -0.02 1.21 16 28 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 3.96 5.95 -2.39 -0.01 3.94 16 30 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 31 H 0.40 14.76 8.54 -92.70 -0.79 13.97 16 32 H 0.08 1.70 7.80 -2.39 -0.02 1.68 16 33 H 0.05 1.34 7.65 -2.39 -0.02 1.32 16 34 H 0.07 1.16 7.31 -2.39 -0.02 1.14 16 35 H 0.09 1.15 7.83 -2.39 -0.02 1.13 16 36 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.07 1.13 7.20 -2.39 -0.02 1.11 16 38 H 0.09 1.12 7.83 -2.39 -0.02 1.10 16 39 H 0.05 1.34 7.55 -2.39 -0.02 1.33 16 40 H 0.08 1.62 7.80 -2.39 -0.02 1.60 16 41 H 0.03 1.17 6.66 -2.39 -0.02 1.15 16 42 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.06 1.55 5.59 -2.39 -0.01 1.54 16 44 H 0.07 1.56 5.35 -2.39 -0.01 1.55 16 45 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.03 1.12 6.79 -2.39 -0.02 1.10 16 Total: -1.00 -65.44 335.88 4.03 -61.41 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: 0.17 Total: 28.81 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 3.86 Total: -22.10 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -2.00 Total: -85.11 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.03 Total: -27.61 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -65.44 4.03 -61.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123687774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.829 kcal (2) G-P(sol) polarization free energy of solvation -65.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds