Wall clock time and date at job start Tue Mar 31 2020 02:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47271 * 2 1 4 4 C 1.53003 * 109.47153 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46850 * 180.02562 * 4 3 2 6 6 C 1.37099 * 119.99830 * 269.99828 * 5 4 3 7 7 H 1.08005 * 119.99736 * 140.51181 * 6 5 4 8 8 C 1.38947 * 120.00272 * 320.51255 * 6 5 4 9 9 N 1.31411 * 120.00107 * 160.40068 * 8 6 5 10 10 Si 1.86801 * 119.99954 * 340.40588 * 8 6 5 11 11 H 1.48506 * 109.47305 * 95.26770 * 10 8 6 12 12 H 1.48496 * 109.47129 * 215.26934 * 10 8 6 13 13 H 1.48504 * 109.47156 * 335.27021 * 10 8 6 14 14 C 1.34775 * 120.00435 * 90.00111 * 5 4 3 15 15 O 1.21300 * 119.99744 * 4.75506 * 14 5 4 16 16 C 1.50694 * 120.00465 * 184.75228 * 14 5 4 17 17 C 1.53003 * 109.47357 * 184.91756 * 16 14 5 18 18 H 1.09001 * 110.35624 * 305.87628 * 17 16 14 19 19 C 1.54579 * 110.49907 * 68.26813 * 17 16 14 20 20 C 1.55926 * 104.64371 * 118.84101 * 19 17 16 21 21 H 1.08996 * 116.52791 * 199.60428 * 20 19 17 22 22 C 1.55920 * 104.49835 * 70.27848 * 20 19 17 23 23 C 1.54588 * 104.64254 * 289.72019 * 22 20 19 24 24 C 1.55920 * 104.64425 * 0.02562 * 23 22 20 25 25 H 1.09002 * 115.92135 * 199.96691 * 24 23 22 26 26 C 1.56951 * 100.64938 * 326.22020 * 20 19 17 27 27 H 1.08999 * 109.47451 * 300.00064 * 1 2 3 28 28 H 1.09003 * 109.47602 * 59.99824 * 1 2 3 29 29 H 1.09006 * 109.47440 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47451 * 239.99935 * 2 1 3 31 31 H 1.09003 * 109.47602 * 120.00176 * 2 1 3 32 32 H 1.08999 * 109.46665 * 60.00098 * 3 2 1 33 33 H 1.08994 * 109.47190 * 299.99987 * 3 2 1 34 34 H 1.08995 * 109.46736 * 60.00256 * 4 3 2 35 35 H 1.09004 * 109.47238 * 300.00298 * 4 3 2 36 36 H 0.97004 * 119.99758 * 180.02562 * 9 8 6 37 37 H 1.09010 * 109.46699 * 64.92100 * 16 14 5 38 38 H 1.08993 * 109.47104 * 304.92231 * 16 14 5 39 39 H 1.09004 * 110.40162 * 0.04966 * 19 17 16 40 40 H 1.08998 * 110.40300 * 237.63184 * 19 17 16 41 41 H 1.08994 * 110.40205 * 48.51234 * 22 20 19 42 42 H 1.09000 * 110.40225 * 170.93132 * 22 20 19 43 43 H 1.09004 * 110.39813 * 118.79236 * 23 22 20 44 44 H 1.08999 * 110.39807 * 241.20732 * 23 22 20 45 45 H 1.09002 * 112.02479 * 170.31148 * 26 20 19 46 46 H 1.09000 * 112.03010 * 296.82325 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2873 3.4703 -1.1858 7 1 4.0249 4.5126 -1.2923 8 6 4.8569 2.7848 -2.2517 9 7 4.7315 3.2500 -3.4744 10 14 5.8009 1.2020 -1.9469 11 1 4.8983 0.0403 -2.1500 12 1 6.9406 1.1149 -2.8948 13 1 6.3142 1.1923 -0.5534 14 6 4.2824 3.4588 1.1687 15 8 4.1630 2.8606 2.2172 16 6 4.6815 4.9119 1.1715 17 6 4.9920 5.3528 2.6034 18 1 4.1515 5.1278 3.2601 19 6 6.2763 4.6621 3.1160 20 6 7.2602 5.8334 3.4179 21 1 8.3184 5.5782 3.4741 22 6 6.6601 6.5330 4.6755 23 6 5.3757 7.2238 4.1628 24 6 5.3204 6.8760 2.6439 25 1 4.6970 7.5249 2.0288 26 6 6.8511 6.8522 2.2962 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9336 0.9286 -0.8891 35 1 3.9330 0.9287 0.8909 36 1 5.1289 2.7712 -4.2186 37 1 3.8637 5.5140 0.7752 38 1 5.5665 5.0469 0.5498 39 1 6.6886 4.0080 2.3476 40 1 6.0674 4.0976 4.0247 41 1 6.4157 5.7957 5.4401 42 1 7.3581 7.2722 5.0685 43 1 4.4999 6.8260 4.6755 44 1 5.4424 8.3026 4.3038 45 1 7.3183 7.8267 2.4389 46 1 7.0373 6.4573 1.2975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144297438.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:00 Heat of formation + Delta-G solvation = -53.814222 kcal Electronic energy + Delta-G solvation = -23042.205017 eV Core-core repulsion = 19930.774732 eV Total energy + Delta-G solvation = -3111.430285 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.16459 -38.57625 -35.55668 -33.97517 -31.91044 -31.84530 -29.28429 -28.76295 -27.65326 -25.95596 -24.69648 -23.12517 -21.16489 -20.67821 -19.57066 -18.88669 -18.31392 -16.81434 -16.19145 -15.76121 -15.17996 -14.91402 -14.87926 -14.62402 -13.98953 -13.63270 -13.24747 -12.78324 -12.61360 -12.33660 -12.23316 -11.93368 -11.83760 -11.68361 -11.37796 -11.20194 -11.07809 -10.99201 -10.80648 -10.68002 -10.64555 -10.54744 -10.46084 -10.34621 -10.05437 -10.03398 -9.89826 -9.74999 -9.61255 -9.13286 -8.47804 -7.72407 -6.47039 -4.08175 3.05357 3.21613 3.30419 3.80221 4.13309 4.39419 4.73921 4.75301 4.78725 4.99055 5.36700 5.38705 5.42304 5.43852 5.52362 5.55152 5.63705 5.70511 5.74187 5.80268 5.82974 5.96693 6.04995 6.10782 6.12711 6.15369 6.16837 6.22575 6.24823 6.26802 6.33800 6.39575 6.43690 6.47660 6.49685 6.51859 6.59951 6.72854 6.76580 6.80705 6.92613 6.96994 7.42593 8.11158 8.27023 8.98204 9.39840 9.74805 10.63838 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017103 B = 0.005486 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.771550 B = 5102.612498 C = 6006.863596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.103 3.897 5 N -0.470 5.470 6 C -0.341 4.341 7 H 0.103 0.897 8 C 0.068 3.932 9 N -0.863 5.863 10 Si 0.876 3.124 11 H -0.275 1.275 12 H -0.289 1.289 13 H -0.262 1.262 14 C 0.483 3.517 15 O -0.597 6.597 16 C -0.113 4.113 17 C -0.067 4.067 18 H 0.073 0.927 19 C -0.101 4.101 20 C -0.111 4.111 21 H 0.091 0.909 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.101 4.101 25 H 0.095 0.905 26 C -0.125 4.125 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.274 0.726 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.346 3.106 9.073 9.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.163 4.163 4 C -0.020 4.020 5 N -0.190 5.190 6 C -0.468 4.468 7 H 0.120 0.880 8 C -0.139 4.139 9 N -0.499 5.499 10 Si 0.704 3.296 11 H -0.202 1.202 12 H -0.216 1.216 13 H -0.186 1.186 14 C 0.274 3.726 15 O -0.483 6.483 16 C -0.153 4.153 17 C -0.086 4.086 18 H 0.091 0.909 19 C -0.138 4.138 20 C -0.129 4.129 21 H 0.109 0.891 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.120 4.120 25 H 0.113 0.887 26 C -0.162 4.162 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.320 2.787 9.372 9.783 hybrid contribution 0.464 -0.859 -0.297 1.020 sum 0.784 1.928 9.075 9.311 Atomic orbital electron populations 1.21738 0.96185 1.00854 1.01731 1.21483 0.95561 0.97559 1.01560 1.21844 0.96184 0.95872 1.02420 1.21581 0.93834 0.85766 1.00861 1.43765 1.57725 1.11685 1.05872 1.19046 1.41858 0.98205 0.87721 0.87955 1.25328 0.95788 0.98043 0.94761 1.69746 1.41296 1.40415 0.98411 0.86945 0.80101 0.83391 0.79174 1.20174 1.21616 1.18637 1.20520 0.79156 0.89630 0.83340 1.90524 1.57024 1.68761 1.31945 1.21466 1.02986 0.94005 0.96817 1.21967 0.97953 0.92708 0.95993 0.90850 1.22532 0.94281 0.96090 1.00923 1.23614 0.98079 0.96265 0.94922 0.89105 1.22599 0.96716 0.98972 0.97363 1.22591 0.97776 0.99357 0.95963 1.23614 0.96439 0.96477 0.95436 0.88661 1.23595 0.95525 0.98300 0.98829 0.92946 0.92768 0.93301 0.92310 0.92337 0.92217 0.91237 0.92090 0.91481 0.91571 0.90269 0.89222 0.91971 0.92046 0.92064 0.92590 0.91947 0.92419 0.91964 0.90886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.15 0.37 -1.66 16 2 C -0.12 -2.00 5.93 -26.73 -0.16 -2.16 16 3 C -0.12 -2.44 5.54 -26.73 -0.15 -2.59 16 4 C 0.10 2.30 4.23 -4.04 -0.02 2.28 16 5 N -0.47 -11.29 2.15 -114.81 -0.25 -11.53 16 6 C -0.34 -8.78 8.95 -14.93 -0.13 -8.91 16 7 H 0.10 2.74 7.44 -52.48 -0.39 2.35 16 8 C 0.07 1.78 5.34 -17.47 -0.09 1.69 16 9 N -0.86 -23.68 13.96 55.50 0.77 -22.91 16 10 Si 0.88 20.73 24.94 -169.99 -4.24 16.49 16 11 H -0.27 -6.27 6.71 56.52 0.38 -5.89 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.26 -6.36 7.11 56.52 0.40 -5.96 16 14 C 0.48 11.10 7.19 -10.99 -0.08 11.02 16 15 O -0.60 -14.62 14.86 5.54 0.08 -14.53 16 16 C -0.11 -2.18 3.62 -27.88 -0.10 -2.28 16 17 C -0.07 -1.12 1.90 -88.26 -0.17 -1.29 16 18 H 0.07 1.31 7.57 -51.93 -0.39 0.92 16 19 C -0.10 -1.66 4.98 -24.34 -0.12 -1.78 16 20 C -0.11 -1.48 5.19 -85.36 -0.44 -1.93 16 21 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 22 C -0.12 -1.43 6.21 -24.34 -0.15 -1.58 16 23 C -0.12 -1.45 6.21 -24.34 -0.15 -1.60 16 24 C -0.10 -1.39 4.59 -85.37 -0.39 -1.78 16 25 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 26 C -0.13 -1.66 6.34 -22.43 -0.14 -1.81 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.06 1.41 3.32 -51.93 -0.17 1.23 16 35 H 0.07 1.51 7.36 -51.93 -0.38 1.13 16 36 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.08 1.47 8.01 -51.92 -0.42 1.06 16 38 H 0.09 1.77 7.07 -51.93 -0.37 1.40 16 39 H 0.06 1.15 7.51 -51.93 -0.39 0.76 16 40 H 0.06 1.04 7.83 -51.93 -0.41 0.63 16 41 H 0.06 0.74 7.83 -51.93 -0.41 0.34 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.77 7.83 -51.93 -0.41 0.36 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.07 1.05 7.33 -51.93 -0.38 0.67 16 LS Contribution 348.09 15.07 5.25 5.25 Total: -1.00 -27.90 348.09 -8.66 -36.56 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -8.34 Total: 5.04 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -1.93 Total: -14.36 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.53 Total: -34.44 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.08 Total: -14.53 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.24 Total: 16.49 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.90 -8.66 -36.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144297438.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.255 kcal (2) G-P(sol) polarization free energy of solvation -27.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds