Wall clock time and date at job start Tue Mar 31 2020 02:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47271 * 2 1 4 4 C 1.53003 * 109.47153 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46850 * 180.02562 * 4 3 2 6 6 C 1.37099 * 119.99830 * 269.99828 * 5 4 3 7 7 H 1.08005 * 119.99736 * 140.51181 * 6 5 4 8 8 C 1.38947 * 120.00272 * 320.51255 * 6 5 4 9 9 N 1.31411 * 120.00107 * 160.40068 * 8 6 5 10 10 Si 1.86801 * 119.99954 * 340.40588 * 8 6 5 11 11 H 1.48506 * 109.47305 * 95.26770 * 10 8 6 12 12 H 1.48496 * 109.47129 * 215.26934 * 10 8 6 13 13 H 1.48504 * 109.47156 * 335.27021 * 10 8 6 14 14 C 1.34775 * 120.00435 * 90.00111 * 5 4 3 15 15 O 1.21300 * 119.99744 * 4.75506 * 14 5 4 16 16 C 1.50694 * 120.00465 * 184.75228 * 14 5 4 17 17 C 1.53003 * 109.47357 * 184.91756 * 16 14 5 18 18 H 1.09001 * 110.35624 * 305.87628 * 17 16 14 19 19 C 1.54579 * 110.49907 * 68.26813 * 17 16 14 20 20 C 1.55926 * 104.64371 * 118.84101 * 19 17 16 21 21 H 1.08996 * 116.52791 * 199.60428 * 20 19 17 22 22 C 1.55920 * 104.49835 * 70.27848 * 20 19 17 23 23 C 1.54588 * 104.64254 * 289.72019 * 22 20 19 24 24 C 1.55920 * 104.64425 * 0.02562 * 23 22 20 25 25 H 1.09002 * 115.92135 * 199.96691 * 24 23 22 26 26 C 1.56951 * 100.64938 * 326.22020 * 20 19 17 27 27 H 1.08999 * 109.47451 * 300.00064 * 1 2 3 28 28 H 1.09003 * 109.47602 * 59.99824 * 1 2 3 29 29 H 1.09006 * 109.47440 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47451 * 239.99935 * 2 1 3 31 31 H 1.09003 * 109.47602 * 120.00176 * 2 1 3 32 32 H 1.08999 * 109.46665 * 60.00098 * 3 2 1 33 33 H 1.08994 * 109.47190 * 299.99987 * 3 2 1 34 34 H 1.08995 * 109.46736 * 60.00256 * 4 3 2 35 35 H 1.09004 * 109.47238 * 300.00298 * 4 3 2 36 36 H 0.97004 * 119.99758 * 180.02562 * 9 8 6 37 37 H 1.09010 * 109.46699 * 64.92100 * 16 14 5 38 38 H 1.08993 * 109.47104 * 304.92231 * 16 14 5 39 39 H 1.09004 * 110.40162 * 0.04966 * 19 17 16 40 40 H 1.08998 * 110.40300 * 237.63184 * 19 17 16 41 41 H 1.08994 * 110.40205 * 48.51234 * 22 20 19 42 42 H 1.09000 * 110.40225 * 170.93132 * 22 20 19 43 43 H 1.09004 * 110.39813 * 118.79236 * 23 22 20 44 44 H 1.08999 * 110.39807 * 241.20732 * 23 22 20 45 45 H 1.09002 * 112.02479 * 170.31148 * 26 20 19 46 46 H 1.09000 * 112.03010 * 296.82325 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2873 3.4703 -1.1858 7 1 4.0249 4.5126 -1.2923 8 6 4.8569 2.7848 -2.2517 9 7 4.7315 3.2500 -3.4744 10 14 5.8009 1.2020 -1.9469 11 1 4.8983 0.0403 -2.1500 12 1 6.9406 1.1149 -2.8948 13 1 6.3142 1.1923 -0.5534 14 6 4.2824 3.4588 1.1687 15 8 4.1630 2.8606 2.2172 16 6 4.6815 4.9119 1.1715 17 6 4.9920 5.3528 2.6034 18 1 4.1515 5.1278 3.2601 19 6 6.2763 4.6621 3.1160 20 6 7.2602 5.8334 3.4179 21 1 8.3184 5.5782 3.4741 22 6 6.6601 6.5330 4.6755 23 6 5.3757 7.2238 4.1628 24 6 5.3204 6.8760 2.6439 25 1 4.6970 7.5249 2.0288 26 6 6.8511 6.8522 2.2962 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9336 0.9286 -0.8891 35 1 3.9330 0.9287 0.8909 36 1 5.1289 2.7712 -4.2186 37 1 3.8637 5.5140 0.7752 38 1 5.5665 5.0469 0.5498 39 1 6.6886 4.0080 2.3476 40 1 6.0674 4.0976 4.0247 41 1 6.4157 5.7957 5.4401 42 1 7.3581 7.2722 5.0685 43 1 4.4999 6.8260 4.6755 44 1 5.4424 8.3026 4.3038 45 1 7.3183 7.8267 2.4389 46 1 7.0373 6.4573 1.2975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144297438.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:59 Heat of formation + Delta-G solvation = -66.620279 kcal Electronic energy + Delta-G solvation = -23042.760330 eV Core-core repulsion = 19930.774732 eV Total energy + Delta-G solvation = -3111.985598 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.48880 -40.27772 -37.30986 -35.62163 -33.83959 -33.30402 -30.48916 -30.17888 -28.76814 -27.45698 -26.58646 -24.63335 -22.41005 -22.13689 -20.84288 -20.60145 -19.54166 -18.65299 -18.02714 -17.23199 -16.70617 -16.48902 -16.24461 -15.96078 -15.54536 -15.32144 -14.71366 -14.63296 -14.18836 -13.86998 -13.47915 -13.38094 -13.30949 -13.18927 -12.96695 -12.85024 -12.32232 -12.19857 -12.15443 -12.09288 -11.98508 -11.94656 -11.81015 -11.70595 -11.58859 -11.49128 -11.37162 -11.13834 -11.05365 -10.84804 -10.33715 -9.68727 -8.52686 -6.15220 1.14371 1.27120 1.37884 1.91881 2.15058 2.62568 2.96238 3.62367 3.63807 3.66201 3.89609 4.02008 4.17494 4.21500 4.27029 4.29078 4.36199 4.40791 4.50509 4.57309 4.59390 4.62222 4.66051 4.73480 4.82706 4.86141 4.90252 4.93436 4.95294 5.02387 5.03689 5.14488 5.20345 5.20817 5.30094 5.32304 5.32445 5.39460 5.39700 5.46196 5.49455 5.52668 5.61878 6.06369 6.27297 6.95203 7.43230 7.81060 8.61559 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017103 B = 0.005486 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.771550 B = 5102.612498 C = 6006.863596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.115 4.115 4 C 0.097 3.903 5 N -0.481 5.481 6 C -0.337 4.337 7 H 0.085 0.915 8 C 0.034 3.966 9 N -0.895 5.895 10 Si 0.922 3.078 11 H -0.259 1.259 12 H -0.283 1.283 13 H -0.275 1.275 14 C 0.477 3.523 15 O -0.613 6.613 16 C -0.106 4.106 17 C -0.065 4.065 18 H 0.058 0.942 19 C -0.102 4.102 20 C -0.106 4.106 21 H 0.104 0.896 22 C -0.115 4.115 23 C -0.116 4.116 24 C -0.098 4.098 25 H 0.105 0.895 26 C -0.123 4.123 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.279 0.721 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.032 0.968 40 H 0.050 0.950 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.536 3.488 10.124 10.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.154 4.154 4 C -0.026 4.026 5 N -0.202 5.202 6 C -0.464 4.464 7 H 0.103 0.897 8 C -0.170 4.170 9 N -0.533 5.533 10 Si 0.748 3.252 11 H -0.185 1.185 12 H -0.210 1.210 13 H -0.200 1.200 14 C 0.268 3.732 15 O -0.500 6.500 16 C -0.146 4.146 17 C -0.084 4.084 18 H 0.077 0.923 19 C -0.140 4.140 20 C -0.124 4.124 21 H 0.122 0.878 22 C -0.153 4.153 23 C -0.153 4.153 24 C -0.116 4.116 25 H 0.123 0.877 26 C -0.160 4.160 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.501 3.161 10.422 10.902 hybrid contribution 0.384 -0.977 -0.591 1.205 sum 0.885 2.184 9.830 10.109 Atomic orbital electron populations 1.21708 0.94035 1.02483 1.01869 1.21484 0.97450 0.94901 1.02057 1.21749 0.94098 0.98257 1.01265 1.21702 0.95744 0.84885 1.00281 1.43921 1.58301 1.12367 1.05650 1.18926 1.41552 0.97707 0.88263 0.89706 1.25776 0.96299 1.00444 0.94517 1.69796 1.42478 1.41917 0.99070 0.86214 0.79418 0.81357 0.78189 1.18466 1.20951 1.20036 1.21158 0.78293 0.90958 0.82767 1.90500 1.57569 1.69533 1.32350 1.21468 1.02628 0.91690 0.98788 1.21947 0.97477 0.95387 0.93598 0.92325 1.22497 0.95220 0.96915 0.99382 1.23644 0.98065 0.94675 0.96010 0.87801 1.22592 0.96998 0.99279 0.96398 1.22588 0.97712 1.00813 0.94214 1.23642 0.96857 0.93937 0.97210 0.87720 1.23596 0.95244 0.99319 0.97861 0.92646 0.92858 0.90928 0.92113 0.91540 0.92974 0.92640 0.92604 0.91884 0.91091 0.89794 0.89865 0.94914 0.93085 0.92422 0.90227 0.92402 0.90081 0.89487 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.91 71.98 0.71 -2.93 16 2 C -0.12 -3.75 5.93 30.59 0.18 -3.57 16 3 C -0.12 -4.51 5.54 30.60 0.17 -4.34 16 4 C 0.10 4.36 4.23 86.38 0.37 4.73 16 5 N -0.48 -23.61 2.15 -635.53 -1.37 -24.97 16 6 C -0.34 -17.73 8.95 84.04 0.75 -16.97 16 7 H 0.09 4.69 7.44 -2.91 -0.02 4.67 16 8 C 0.03 1.80 5.34 84.93 0.45 2.26 16 9 N -0.90 -49.58 13.96 21.66 0.30 -49.28 16 10 Si 0.92 42.80 24.94 68.60 1.71 44.51 16 11 H -0.26 -11.27 6.71 99.48 0.67 -10.61 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 13 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 14 C 0.48 22.48 7.19 87.66 0.63 23.11 16 15 O -0.61 -30.69 14.86 -3.09 -0.05 -30.73 16 16 C -0.11 -4.19 3.62 29.85 0.11 -4.08 16 17 C -0.07 -2.18 1.90 -9.26 -0.02 -2.20 16 18 H 0.06 2.12 7.57 -2.39 -0.02 2.11 16 19 C -0.10 -3.41 4.98 32.14 0.16 -3.25 16 20 C -0.11 -2.67 5.19 -7.38 -0.04 -2.70 16 21 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 22 C -0.12 -2.46 6.21 32.15 0.20 -2.26 16 23 C -0.12 -2.51 6.21 32.15 0.20 -2.31 16 24 C -0.10 -2.53 4.59 -7.39 -0.03 -2.56 16 25 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 26 C -0.12 -3.03 6.34 33.38 0.21 -2.82 16 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.06 2.56 3.32 -2.39 -0.01 2.56 16 35 H 0.06 2.86 7.36 -2.39 -0.02 2.85 16 36 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 37 H 0.08 3.20 8.01 -2.38 -0.02 3.18 16 38 H 0.08 3.39 7.07 -2.39 -0.02 3.37 16 39 H 0.03 1.25 7.51 -2.39 -0.02 1.23 16 40 H 0.05 1.76 7.83 -2.39 -0.02 1.74 16 41 H 0.06 1.28 7.83 -2.39 -0.02 1.26 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.06 1.31 7.83 -2.39 -0.02 1.30 16 44 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.06 1.58 7.33 -2.39 -0.02 1.56 16 Total: -1.00 -60.09 348.09 5.54 -54.55 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.89 Total: 25.85 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 4.05 Total: -19.92 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -1.06 Total: -74.25 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.05 Total: -30.73 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.71 Total: 44.51 kcal Total: -60.09 5.54 -54.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144297438.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.070 kcal (2) G-P(sol) polarization free energy of solvation -60.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds