Wall clock time and date at job start Tue Mar 31 2020 02:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46885 * 2 1 4 4 C 1.52991 * 109.46921 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47237 * 179.97438 * 4 3 2 6 6 C 1.37093 * 120.00154 * 89.99676 * 5 4 3 7 7 H 1.08007 * 120.00350 * 222.73218 * 6 5 4 8 8 C 1.38944 * 120.00057 * 42.72688 * 6 5 4 9 9 N 1.31411 * 120.00105 * 7.67309 * 8 6 5 10 10 Si 1.86803 * 120.00301 * 187.67153 * 8 6 5 11 11 H 1.48501 * 109.47163 * 180.02562 * 10 8 6 12 12 H 1.48502 * 109.46788 * 300.00004 * 10 8 6 13 13 H 1.48499 * 109.47286 * 60.00007 * 10 8 6 14 14 C 1.34781 * 120.00046 * 270.00391 * 5 4 3 15 15 O 1.21293 * 119.99826 * 354.40819 * 14 5 4 16 16 C 1.50691 * 120.00091 * 174.41012 * 14 5 4 17 17 C 1.52998 * 109.47373 * 184.17750 * 16 14 5 18 18 H 1.09011 * 110.35655 * 52.34174 * 17 16 14 19 19 C 1.54581 * 110.40590 * 289.89552 * 17 16 14 20 20 C 1.55933 * 104.64176 * 241.20842 * 19 17 16 21 21 H 1.09001 * 116.52981 * 199.60425 * 20 19 17 22 22 C 1.55919 * 104.50212 * 70.27086 * 20 19 17 23 23 C 1.54582 * 104.64358 * 289.72587 * 22 20 19 24 24 C 1.55915 * 104.64562 * 359.97438 * 23 22 20 25 25 H 1.09000 * 115.92563 * 199.15927 * 24 23 22 26 26 C 1.56948 * 100.65440 * 326.22480 * 24 23 22 27 27 H 1.09006 * 109.46945 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47170 * 299.99990 * 1 2 3 29 29 H 1.08996 * 109.47529 * 60.00179 * 1 2 3 30 30 H 1.08994 * 109.47345 * 239.99735 * 2 1 3 31 31 H 1.09001 * 109.46909 * 119.99480 * 2 1 3 32 32 H 1.08998 * 109.47135 * 59.99280 * 3 2 1 33 33 H 1.09004 * 109.46725 * 299.99952 * 3 2 1 34 34 H 1.09006 * 109.47616 * 59.99973 * 4 3 2 35 35 H 1.09004 * 109.47396 * 299.99558 * 4 3 2 36 36 H 0.96998 * 120.00118 * 174.99464 * 9 8 6 37 37 H 1.09003 * 109.47366 * 304.18026 * 16 14 5 38 38 H 1.09001 * 109.47070 * 64.18158 * 16 14 5 39 39 H 1.09001 * 110.39766 * 359.97438 * 19 17 16 40 40 H 1.08998 * 110.40818 * 122.41306 * 19 17 16 41 41 H 1.08993 * 110.40636 * 170.93011 * 22 20 19 42 42 H 1.08997 * 110.40073 * 48.51282 * 22 20 19 43 43 H 1.09001 * 110.39802 * 241.20037 * 23 22 20 44 44 H 1.08996 * 110.50078 * 118.84547 * 23 22 20 45 45 H 1.08996 * 112.02907 * 170.30472 * 26 24 23 46 46 H 1.09005 * 112.02388 * 296.82429 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.2862 3.4709 1.1870 7 1 3.9761 4.4981 1.3104 8 6 4.9161 2.8052 2.2313 9 7 5.4276 1.6106 2.0356 10 14 5.0358 3.6081 3.9137 11 1 5.7491 2.6991 4.8465 12 1 5.7835 4.8861 3.8001 13 1 3.6705 3.8778 4.4319 14 6 4.2833 3.4585 -1.1675 15 8 4.1795 2.8561 -2.2151 16 6 4.6640 4.9166 -1.1713 17 6 4.7589 5.4152 -2.6146 18 1 3.8461 5.1743 -3.1598 19 6 5.9887 4.7975 -3.3185 20 6 6.8764 6.0197 -3.7056 21 1 7.6182 5.8546 -4.4870 22 6 7.4252 6.5498 -2.3458 23 6 6.1953 7.1674 -1.6420 24 6 5.0193 6.9528 -2.6431 25 1 4.1453 7.5870 -2.4945 26 6 5.7740 7.0945 -4.0119 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9329 0.9290 0.8909 36 1 5.9302 1.1765 2.7425 37 1 3.9071 5.4912 -0.6374 38 1 5.6288 5.0415 -0.6797 39 1 6.5260 4.1390 -2.6361 40 1 5.6819 4.2528 -4.2114 41 1 8.1881 7.3099 -2.5143 42 1 7.8296 5.7291 -1.7534 43 1 6.3535 8.2311 -1.4645 44 1 5.9942 6.6521 -0.7029 45 1 5.1469 6.8077 -4.8560 46 1 6.1984 8.0898 -4.1436 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144297439.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:04 Heat of formation + Delta-G solvation = -56.331279 kcal Electronic energy + Delta-G solvation = -23135.155247 eV Core-core repulsion = 20023.615814 eV Total energy + Delta-G solvation = -3111.539433 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.20263 -38.21862 -35.27884 -33.86260 -31.48065 -31.36631 -29.52718 -28.58897 -27.96347 -25.25920 -24.76665 -22.50712 -21.26401 -20.33176 -19.67365 -19.09078 -17.95419 -16.68497 -16.04415 -15.83650 -14.88250 -14.68137 -14.51852 -14.29252 -14.00420 -13.49631 -13.13300 -12.60165 -12.25530 -12.16766 -12.10829 -11.83785 -11.60784 -11.34584 -11.14985 -11.11542 -11.01757 -10.85292 -10.82081 -10.64357 -10.53886 -10.47326 -10.35627 -10.26166 -10.19486 -9.91342 -9.76543 -9.63809 -9.43633 -9.03162 -8.27998 -7.33594 -6.27543 -4.10589 3.13133 3.20349 3.21077 3.99010 4.16331 4.69529 4.79536 4.85212 4.95129 5.05895 5.49536 5.52256 5.52841 5.59164 5.65349 5.67514 5.70676 5.79171 5.83188 5.88005 6.00408 6.04431 6.12467 6.24880 6.25796 6.28143 6.33068 6.37216 6.42367 6.43469 6.47116 6.57192 6.60444 6.67937 6.71990 6.76665 6.82670 6.87865 6.90174 7.02762 7.24440 7.39229 7.65979 8.10964 8.45177 9.12555 9.61321 10.04829 10.71973 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014380 B = 0.005984 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.690534 B = 4678.266250 C = 6042.455588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.126 4.126 4 C 0.108 3.892 5 N -0.445 5.445 6 C -0.332 4.332 7 H 0.084 0.916 8 C 0.044 3.956 9 N -0.871 5.871 10 Si 0.916 3.084 11 H -0.284 1.284 12 H -0.272 1.272 13 H -0.273 1.273 14 C 0.476 3.524 15 O -0.603 6.603 16 C -0.114 4.114 17 C -0.068 4.068 18 H 0.070 0.930 19 C -0.097 4.097 20 C -0.111 4.111 21 H 0.089 0.911 22 C -0.119 4.119 23 C -0.130 4.130 24 C -0.102 4.102 25 H 0.092 0.908 26 C -0.122 4.122 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.113 0.887 36 H 0.269 0.731 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.933 6.605 -4.578 8.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.164 4.164 4 C -0.016 4.016 5 N -0.164 5.164 6 C -0.461 4.461 7 H 0.102 0.898 8 C -0.161 4.161 9 N -0.508 5.508 10 Si 0.742 3.258 11 H -0.209 1.209 12 H -0.198 1.198 13 H -0.199 1.199 14 C 0.265 3.735 15 O -0.489 6.489 16 C -0.154 4.154 17 C -0.087 4.087 18 H 0.088 0.912 19 C -0.135 4.135 20 C -0.129 4.129 21 H 0.108 0.892 22 C -0.157 4.157 23 C -0.167 4.167 24 C -0.121 4.121 25 H 0.110 0.890 26 C -0.160 4.160 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.083 0.917 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.927 6.097 -4.908 7.882 hybrid contribution 0.098 0.352 1.108 1.167 sum -0.828 6.449 -3.799 7.531 Atomic orbital electron populations 1.21760 0.96766 1.00603 1.01397 1.21426 0.94823 0.97897 1.01566 1.21900 0.98352 0.95259 1.00920 1.21528 0.90700 0.85528 1.03808 1.43396 1.56505 1.12033 1.04440 1.19351 1.38607 0.98069 0.90026 0.89840 1.25457 0.95006 0.95727 0.99907 1.69680 1.32979 1.13927 1.34249 0.86185 0.78599 0.79043 0.81955 1.20898 1.19760 1.19864 1.20569 0.79539 0.89423 0.83997 1.90505 1.57420 1.68780 1.32193 1.21565 1.02967 0.94520 0.96363 1.21910 0.98619 0.92582 0.95564 0.91150 1.22496 0.95255 0.95680 1.00069 1.23631 0.96663 0.96230 0.96373 0.89246 1.22583 0.97093 0.99772 0.96227 1.22776 0.94727 0.99839 0.99381 1.23610 0.96961 0.96589 0.94902 0.89021 1.23528 0.97250 0.98100 0.97103 0.93476 0.93075 0.93175 0.92515 0.92217 0.92443 0.93479 0.93171 0.86980 0.91999 0.90810 0.89163 0.91684 0.92243 0.92706 0.91695 0.92732 0.90263 0.91674 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.12 -2.07 5.93 -26.73 -0.16 -2.23 16 3 C -0.13 -2.62 5.54 -26.73 -0.15 -2.77 16 4 C 0.11 2.63 5.03 -4.04 -0.02 2.61 16 5 N -0.45 -11.25 2.51 -114.81 -0.29 -11.54 16 6 C -0.33 -8.35 8.60 -14.94 -0.13 -8.48 16 7 H 0.08 2.00 7.08 -52.48 -0.37 1.63 16 8 C 0.04 1.10 5.23 -17.47 -0.09 1.01 16 9 N -0.87 -23.02 11.03 55.50 0.61 -22.41 16 10 Si 0.92 19.40 29.56 -169.99 -5.03 14.37 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 13 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 14 C 0.48 11.55 7.32 -10.99 -0.08 11.47 16 15 O -0.60 -15.81 14.74 5.55 0.08 -15.73 16 16 C -0.11 -2.27 2.81 -27.89 -0.08 -2.35 16 17 C -0.07 -1.18 2.29 -88.20 -0.20 -1.38 16 18 H 0.07 1.31 7.96 -51.92 -0.41 0.90 16 19 C -0.10 -1.68 4.84 -24.33 -0.12 -1.80 16 20 C -0.11 -1.54 5.19 -85.33 -0.44 -1.98 16 21 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 22 C -0.12 -1.64 6.21 -24.34 -0.15 -1.79 16 23 C -0.13 -1.80 5.85 -24.34 -0.14 -1.95 16 24 C -0.10 -1.44 4.93 -85.33 -0.42 -1.86 16 25 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 26 C -0.12 -1.57 6.43 -22.43 -0.14 -1.71 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 1.28 7.35 -51.93 -0.38 0.90 16 35 H 0.11 2.91 5.37 -51.93 -0.28 2.63 16 36 H 0.27 6.77 8.32 -40.82 -0.34 6.43 16 37 H 0.07 1.40 7.65 -51.93 -0.40 1.00 16 38 H 0.09 1.82 6.13 -51.93 -0.32 1.50 16 39 H 0.06 1.28 7.24 -51.93 -0.38 0.90 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.97 7.83 -51.93 -0.41 0.56 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 1.21 5.42 -51.93 -0.28 0.93 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 349.62 15.07 5.27 5.27 Total: -1.00 -27.72 349.62 -9.59 -37.30 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -8.28 Total: 7.73 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -1.96 Total: -15.00 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.32 Total: -33.94 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.08 Total: -15.73 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.72 -9.59 -37.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144297439.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.027 kcal (2) G-P(sol) polarization free energy of solvation -27.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds