Wall clock time and date at job start Tue Mar 31 2020 00:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46985 * 2 1 4 4 C 1.57071 * 116.36599 * 179.97438 * 3 2 1 5 5 C 1.57189 * 93.81937 * 180.86974 * 4 3 2 6 6 H 1.09004 * 116.80495 * 183.48998 * 5 4 3 7 7 C 1.56173 * 98.93582 * 309.48238 * 5 4 3 8 8 O 1.44113 * 105.46042 * 32.02998 * 7 5 4 9 9 N 1.49793 * 100.91641 * 55.40246 * 5 4 3 10 10 C 1.46902 * 111.00066 * 202.45644 * 9 5 4 11 11 C 1.53001 * 109.46871 * 304.33293 * 10 9 5 12 12 C 1.52999 * 109.47016 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.47212 * 59.99647 * 12 11 10 14 14 C 1.50704 * 109.46906 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00226 * 120.00231 * 14 13 12 16 16 C 1.37874 * 119.99725 * 299.99592 * 14 13 12 17 17 N 1.31519 * 120.00505 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99867 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46835 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.46844 * 120.00196 * 18 16 14 21 21 H 1.48501 * 109.46961 * 240.00130 * 18 16 14 22 22 C 1.53002 * 109.46934 * 299.99885 * 13 12 11 23 23 C 1.52997 * 109.47053 * 184.32983 * 10 9 5 24 24 C 1.48780 * 105.61230 * 322.89990 * 9 5 4 25 25 H 1.08999 * 109.46886 * 60.00467 * 1 2 3 26 26 H 1.08998 * 109.47583 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47551 * 300.00609 * 1 2 3 28 28 H 1.08994 * 109.47106 * 239.99078 * 2 1 3 29 29 H 1.09002 * 109.46481 * 119.99838 * 2 1 3 30 30 H 1.08993 * 112.45164 * 297.08127 * 4 3 2 31 31 H 1.08997 * 112.44915 * 64.65829 * 4 3 2 32 32 H 1.08997 * 110.15658 * 273.06688 * 7 5 4 33 33 H 1.08997 * 110.38034 * 151.10868 * 7 5 4 34 34 H 1.09001 * 109.46958 * 64.33129 * 10 9 5 35 35 H 1.09001 * 109.47195 * 299.99691 * 11 10 9 36 36 H 1.08998 * 109.47493 * 60.00009 * 11 10 9 37 37 H 1.09001 * 109.46831 * 299.99847 * 12 11 10 38 38 H 1.08996 * 109.47388 * 180.02562 * 12 11 10 39 39 H 1.09001 * 109.47060 * 60.00340 * 13 12 11 40 40 H 0.97001 * 120.00396 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.47104 * 300.00103 * 22 13 12 42 42 H 1.08994 * 109.46527 * 179.97438 * 22 13 12 43 43 H 1.08997 * 109.47285 * 299.99806 * 23 10 9 44 44 H 1.09001 * 109.47119 * 60.00244 * 23 10 9 45 45 H 1.08997 * 110.37525 * 243.62984 * 24 9 5 46 46 H 1.08999 * 110.34735 * 121.35152 * 24 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5993 1.6311 0.0006 5 6 3.5150 3.2005 0.0242 6 1 4.4582 3.7443 -0.0283 7 6 2.5207 3.4078 -1.1622 8 8 1.6552 2.2558 -1.1439 9 7 2.6675 3.4209 1.2395 10 6 2.0076 4.7324 1.1905 11 6 3.0619 5.8275 1.0162 12 6 2.3747 7.1935 0.9658 13 6 1.6075 7.4269 2.2688 14 6 0.9301 8.7722 2.2188 15 1 -0.1444 8.8393 2.3031 16 6 1.6824 9.9175 2.0655 17 7 2.9910 9.8359 1.9625 18 14 0.8429 11.5852 2.0043 19 1 -0.6248 11.4058 2.1419 20 1 1.3440 12.4326 3.1160 21 1 1.1423 12.2427 0.7069 22 6 0.5532 6.3319 2.4430 23 6 1.2400 4.9661 2.4931 24 6 1.6676 2.3192 1.2355 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8898 29 1 1.8932 -0.5138 0.8900 30 1 4.0672 1.2259 0.8978 31 1 4.0647 1.2529 -0.9095 32 1 3.0657 3.4555 -2.1050 33 1 1.9400 4.3186 -1.0161 34 1 1.3139 4.7589 0.3502 35 1 3.7556 5.8010 1.8565 36 1 3.6088 5.6610 0.0881 37 1 1.6807 7.2203 0.1257 38 1 3.1257 7.9736 0.8411 39 1 2.3015 7.4001 3.1089 40 1 3.5202 10.6416 1.8543 41 1 -0.1407 6.3587 1.6028 42 1 0.0070 6.4979 3.3714 43 1 0.4890 4.1860 2.6173 44 1 1.9338 4.9396 3.3335 45 1 0.6605 2.7212 1.1250 46 1 1.7444 1.7343 2.1520 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173338147.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:02 Heat of formation + Delta-G solvation = -32.870269 kcal Electronic energy + Delta-G solvation = -23518.182419 eV Core-core repulsion = 20407.660331 eV Total energy + Delta-G solvation = -3110.522087 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.34559 -37.62266 -34.59435 -33.93910 -32.51837 -30.43752 -30.15790 -28.67042 -27.70344 -24.94709 -24.26937 -23.34630 -21.81342 -21.01149 -20.29960 -19.08044 -18.47975 -16.82402 -16.28148 -16.24553 -15.45300 -14.85367 -14.52641 -13.89671 -13.81398 -13.58800 -13.22460 -12.88598 -12.80415 -12.67890 -12.48670 -12.20230 -12.02559 -11.91034 -11.62056 -11.45019 -11.28068 -11.05305 -11.00069 -10.91134 -10.84789 -10.63820 -10.44400 -10.30011 -10.13972 -9.73995 -9.40075 -9.27978 -8.85007 -8.61716 -8.27203 -8.05831 -5.94813 -4.00635 3.31052 3.39263 3.43312 3.56507 4.01571 4.28311 4.32313 4.46796 4.50418 4.84961 5.08499 5.16082 5.20833 5.33428 5.35353 5.40565 5.46298 5.52662 5.62788 5.68917 5.71766 5.72386 5.80951 5.88185 5.94146 6.00226 6.04101 6.16072 6.18139 6.34316 6.37247 6.45904 6.54017 6.67725 6.75005 6.81270 6.96483 7.00539 7.16248 7.26242 7.38373 7.56385 7.78935 8.06464 8.19106 8.51414 9.03829 9.63918 11.10724 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.035101 B = 0.004102 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.504435 B = 6824.612165 C = 7092.824638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.083 4.083 3 C 0.076 3.924 4 C -0.151 4.151 5 C 0.035 3.965 6 H 0.132 0.868 7 C 0.006 3.994 8 O -0.375 6.375 9 N -0.510 5.510 10 C 0.075 3.925 11 C -0.108 4.108 12 C -0.107 4.107 13 C 0.049 3.951 14 C -0.511 4.511 15 H 0.054 0.946 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.887 3.113 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.108 4.108 23 C -0.103 4.103 24 C 0.020 3.980 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.040 0.960 37 H 0.030 0.970 38 H 0.093 0.907 39 H 0.026 0.974 40 H 0.258 0.742 41 H 0.044 0.956 42 H 0.048 0.952 43 H 0.042 0.958 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 -18.322 -4.176 18.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.121 4.121 3 C 0.037 3.963 4 C -0.189 4.189 5 C -0.073 4.073 6 H 0.149 0.851 7 C -0.072 4.072 8 O -0.295 6.295 9 N -0.233 5.233 10 C -0.033 4.033 11 C -0.146 4.146 12 C -0.146 4.146 13 C 0.030 3.970 14 C -0.550 4.550 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.716 3.284 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.146 4.146 23 C -0.141 4.141 24 C -0.108 4.108 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.111 0.889 39 H 0.044 0.956 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.753 -18.231 -3.846 18.648 hybrid contribution -0.725 1.216 -0.738 1.596 sum 0.028 -17.016 -4.584 17.622 Atomic orbital electron populations 1.21711 0.94887 1.01508 1.02713 1.21024 0.96816 0.91468 1.02814 1.24285 0.93301 0.91992 0.86732 1.24282 0.96110 0.95562 1.02945 1.24964 0.97439 0.95835 0.89037 0.85070 1.24357 0.93486 0.89908 0.99429 1.89017 1.57252 1.34923 1.48318 1.65294 1.18872 1.02498 1.36659 1.22043 0.95832 0.87588 0.97813 1.21711 0.97085 0.95750 1.00094 1.21602 1.00217 0.93749 0.98991 1.18655 0.92604 0.91758 0.93943 1.21289 0.93300 0.91162 1.49215 0.92817 1.24962 0.94814 0.98912 0.95308 1.69886 1.04436 1.28129 1.50536 0.86610 0.79794 0.84516 0.77520 1.19869 1.21100 1.21121 1.21615 0.99053 0.93891 1.00009 1.21546 0.98156 0.97764 0.96593 1.23884 0.95904 0.93382 0.97633 0.92051 0.92626 0.92460 0.90973 0.90093 0.89020 0.89980 0.91325 0.89604 0.93741 0.92020 0.94150 0.95113 0.88858 0.95602 0.93192 0.93700 0.93311 0.93970 0.91885 0.91540 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.71 37.16 0.36 -1.04 16 2 C -0.08 -0.77 6.04 -26.73 -0.16 -0.93 16 3 C 0.08 0.91 1.41 -86.81 -0.12 0.79 16 4 C -0.15 -1.67 6.56 -22.25 -0.15 -1.82 16 5 C 0.04 0.47 4.15 -62.12 -0.26 0.21 16 6 H 0.13 1.64 7.54 -51.93 -0.39 1.25 16 7 C 0.01 0.08 6.59 38.86 0.26 0.34 16 8 O -0.38 -5.46 10.96 -35.23 -0.39 -5.85 16 9 N -0.51 -7.64 5.13 -208.24 -1.07 -8.71 16 10 C 0.07 1.29 1.04 -67.71 -0.07 1.22 16 11 C -0.11 -2.07 4.90 -26.73 -0.13 -2.21 16 12 C -0.11 -2.49 4.98 -26.73 -0.13 -2.62 16 13 C 0.05 1.21 2.10 -91.77 -0.19 1.02 16 14 C -0.51 -14.10 8.56 -34.44 -0.29 -14.39 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -25.39 11.32 55.43 0.63 -24.76 16 18 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 C -0.11 -2.27 5.14 -26.75 -0.14 -2.41 16 23 C -0.10 -1.87 5.20 -26.76 -0.14 -2.00 16 24 C 0.02 0.27 4.69 -1.17 -0.01 0.26 16 25 H 0.06 0.65 8.04 -51.93 -0.42 0.24 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.54 7.71 -51.93 -0.40 0.14 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.36 5.25 -51.93 -0.27 1.08 16 34 H 0.04 0.82 5.74 -51.93 -0.30 0.52 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.04 0.70 6.58 -51.93 -0.34 0.36 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.04 0.70 6.98 -51.93 -0.36 0.33 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.07 0.98 6.88 -51.93 -0.36 0.62 16 46 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 337.30 15.07 5.08 5.08 Total: -1.00 -28.60 337.30 -10.23 -38.83 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -8.19 Total: 1.05 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -1.27 Total: -21.99 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: -0.44 Total: -33.47 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.39 Total: -5.85 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.60 -10.23 -38.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338147.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.957 kcal (2) G-P(sol) polarization free energy of solvation -28.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds