Wall clock time and date at job start Tue Mar 31 2020 00:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46985 * 2 1 4 4 C 1.57071 * 116.36599 * 179.97438 * 3 2 1 5 5 C 1.57189 * 93.81937 * 180.86974 * 4 3 2 6 6 H 1.09004 * 116.80495 * 183.48998 * 5 4 3 7 7 C 1.56173 * 98.93582 * 309.48238 * 5 4 3 8 8 O 1.44113 * 105.46042 * 32.02998 * 7 5 4 9 9 N 1.49793 * 100.91641 * 55.40246 * 5 4 3 10 10 C 1.46902 * 111.00066 * 202.45644 * 9 5 4 11 11 C 1.53001 * 109.46871 * 304.33293 * 10 9 5 12 12 C 1.52999 * 109.47016 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.47212 * 59.99647 * 12 11 10 14 14 C 1.50704 * 109.46906 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00226 * 120.00231 * 14 13 12 16 16 C 1.37874 * 119.99725 * 299.99592 * 14 13 12 17 17 N 1.31519 * 120.00505 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99867 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46835 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.46844 * 120.00196 * 18 16 14 21 21 H 1.48501 * 109.46961 * 240.00130 * 18 16 14 22 22 C 1.53002 * 109.46934 * 299.99885 * 13 12 11 23 23 C 1.52997 * 109.47053 * 184.32983 * 10 9 5 24 24 C 1.48780 * 105.61230 * 322.89990 * 9 5 4 25 25 H 1.08999 * 109.46886 * 60.00467 * 1 2 3 26 26 H 1.08998 * 109.47583 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47551 * 300.00609 * 1 2 3 28 28 H 1.08994 * 109.47106 * 239.99078 * 2 1 3 29 29 H 1.09002 * 109.46481 * 119.99838 * 2 1 3 30 30 H 1.08993 * 112.45164 * 297.08127 * 4 3 2 31 31 H 1.08997 * 112.44915 * 64.65829 * 4 3 2 32 32 H 1.08997 * 110.15658 * 273.06688 * 7 5 4 33 33 H 1.08997 * 110.38034 * 151.10868 * 7 5 4 34 34 H 1.09001 * 109.46958 * 64.33129 * 10 9 5 35 35 H 1.09001 * 109.47195 * 299.99691 * 11 10 9 36 36 H 1.08998 * 109.47493 * 60.00009 * 11 10 9 37 37 H 1.09001 * 109.46831 * 299.99847 * 12 11 10 38 38 H 1.08996 * 109.47388 * 180.02562 * 12 11 10 39 39 H 1.09001 * 109.47060 * 60.00340 * 13 12 11 40 40 H 0.97001 * 120.00396 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.47104 * 300.00103 * 22 13 12 42 42 H 1.08994 * 109.46527 * 179.97438 * 22 13 12 43 43 H 1.08997 * 109.47285 * 299.99806 * 23 10 9 44 44 H 1.09001 * 109.47119 * 60.00244 * 23 10 9 45 45 H 1.08997 * 110.37525 * 243.62984 * 24 9 5 46 46 H 1.08999 * 110.34735 * 121.35152 * 24 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5993 1.6311 0.0006 5 6 3.5150 3.2005 0.0242 6 1 4.4582 3.7443 -0.0283 7 6 2.5207 3.4078 -1.1622 8 8 1.6552 2.2558 -1.1439 9 7 2.6675 3.4209 1.2395 10 6 2.0076 4.7324 1.1905 11 6 3.0619 5.8275 1.0162 12 6 2.3747 7.1935 0.9658 13 6 1.6075 7.4269 2.2688 14 6 0.9301 8.7722 2.2188 15 1 -0.1444 8.8393 2.3031 16 6 1.6824 9.9175 2.0655 17 7 2.9910 9.8359 1.9625 18 14 0.8429 11.5852 2.0043 19 1 -0.6248 11.4058 2.1419 20 1 1.3440 12.4326 3.1160 21 1 1.1423 12.2427 0.7069 22 6 0.5532 6.3319 2.4430 23 6 1.2400 4.9661 2.4931 24 6 1.6676 2.3192 1.2355 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8898 29 1 1.8932 -0.5138 0.8900 30 1 4.0672 1.2259 0.8978 31 1 4.0647 1.2529 -0.9095 32 1 3.0657 3.4555 -2.1050 33 1 1.9400 4.3186 -1.0161 34 1 1.3139 4.7589 0.3502 35 1 3.7556 5.8010 1.8565 36 1 3.6088 5.6610 0.0881 37 1 1.6807 7.2203 0.1257 38 1 3.1257 7.9736 0.8411 39 1 2.3015 7.4001 3.1089 40 1 3.5202 10.6416 1.8543 41 1 -0.1407 6.3587 1.6028 42 1 0.0070 6.4979 3.3714 43 1 0.4890 4.1860 2.6173 44 1 1.9338 4.9396 3.3335 45 1 0.6605 2.7212 1.1250 46 1 1.7444 1.7343 2.1520 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173338147.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:01 Heat of formation + Delta-G solvation = -49.692999 kcal Electronic energy + Delta-G solvation = -23518.911907 eV Core-core repulsion = 20407.660331 eV Total energy + Delta-G solvation = -3111.251576 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.42180 -39.20790 -36.02847 -34.79542 -34.30477 -31.84951 -31.70208 -29.89494 -29.10390 -26.49163 -25.60383 -24.36526 -23.32819 -22.45543 -21.48138 -20.67499 -19.72124 -18.42099 -17.84963 -17.27027 -16.81647 -16.43159 -15.97207 -15.21561 -14.89352 -14.77795 -14.66816 -14.32620 -14.22780 -14.00078 -13.68626 -13.40993 -13.34656 -13.10442 -12.89110 -12.78465 -12.73104 -12.56419 -12.42615 -12.35879 -12.11954 -11.93098 -11.86512 -11.74988 -11.60505 -11.50321 -11.23583 -10.74405 -10.50911 -10.40675 -10.36836 -9.23619 -8.07557 -6.21465 1.38741 1.40776 1.51908 2.43063 2.59086 2.88463 3.18674 3.32225 3.38750 3.61964 3.81178 3.92503 3.95521 4.24495 4.33896 4.35069 4.38330 4.44798 4.52912 4.55271 4.65197 4.72251 4.72841 4.78542 4.80557 4.86811 4.91533 4.94145 4.96312 4.98852 5.07138 5.12930 5.15806 5.20635 5.30072 5.37767 5.43393 5.45140 5.60158 5.67076 5.74167 5.83257 6.02780 6.07567 6.20576 6.41663 6.90705 7.46428 8.96502 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.035101 B = 0.004102 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.504435 B = 6824.612165 C = 7092.824638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.081 4.081 3 C 0.076 3.924 4 C -0.138 4.138 5 C 0.028 3.972 6 H 0.138 0.862 7 C 0.006 3.994 8 O -0.394 6.394 9 N -0.515 5.515 10 C 0.088 3.912 11 C -0.096 4.096 12 C -0.098 4.098 13 C 0.046 3.954 14 C -0.536 4.536 15 H 0.048 0.952 16 C 0.014 3.986 17 N -0.915 5.915 18 Si 0.951 3.049 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.100 4.100 23 C -0.094 4.094 24 C 0.018 3.982 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.021 0.979 38 H 0.061 0.939 39 H -0.006 1.006 40 H 0.260 0.740 41 H 0.042 0.958 42 H 0.048 0.952 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.050 0.950 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.572 -20.329 -4.434 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C 0.037 3.963 4 C -0.175 4.175 5 C -0.079 4.079 6 H 0.156 0.844 7 C -0.072 4.072 8 O -0.314 6.314 9 N -0.238 5.238 10 C -0.020 4.020 11 C -0.134 4.134 12 C -0.137 4.137 13 C 0.027 3.973 14 C -0.574 4.574 15 H 0.067 0.933 16 C -0.185 4.185 17 N -0.555 5.555 18 Si 0.777 3.223 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.138 4.138 23 C -0.132 4.132 24 C -0.110 4.110 25 H 0.060 0.940 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.040 0.960 38 H 0.080 0.920 39 H 0.012 0.988 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.847 -20.253 -4.103 20.682 hybrid contribution -0.763 1.836 -0.653 2.093 sum 0.084 -18.417 -4.756 19.022 Atomic orbital electron populations 1.21700 0.95182 1.02402 1.01459 1.21120 0.96537 0.89761 1.04408 1.24567 0.94052 0.92708 0.84955 1.24270 0.95507 0.93386 1.04377 1.25135 0.97095 0.97976 0.87728 0.84418 1.24300 0.93338 0.89074 1.00504 1.89009 1.57835 1.35242 1.49358 1.65253 1.19188 1.01522 1.37851 1.21737 0.94877 0.88591 0.96835 1.21508 0.97158 0.94121 1.00568 1.21373 0.99130 0.95383 0.97772 1.18623 0.92976 0.92270 0.93382 1.21651 0.93283 0.92871 1.49580 0.93340 1.25713 0.95438 1.02408 0.94935 1.70020 1.05575 1.29037 1.50861 0.85620 0.78920 0.80160 0.77644 1.19367 1.20573 1.20575 1.21477 0.98071 0.94505 0.99795 1.21435 0.98450 0.96414 0.96928 1.23951 0.94581 0.93166 0.99304 0.94026 0.90677 0.92994 0.90003 0.87796 0.87714 0.88364 0.89958 0.92039 0.94691 0.93065 0.92327 0.95976 0.92048 0.98771 0.93093 0.93966 0.93364 0.91820 0.92434 0.93145 0.88555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.71 71.98 0.70 -1.75 16 2 C -0.08 -1.23 6.04 30.59 0.18 -1.05 16 3 C 0.08 1.62 1.41 -8.32 -0.01 1.61 16 4 C -0.14 -2.59 6.56 33.50 0.22 -2.37 16 5 C 0.03 0.69 4.15 46.93 0.19 0.89 16 6 H 0.14 3.15 7.54 -2.38 -0.02 3.13 16 7 C 0.01 0.15 6.59 73.08 0.48 0.63 16 8 O -0.39 -10.87 10.96 -148.98 -1.63 -12.51 16 9 N -0.51 -14.62 5.13 -812.73 -4.17 -18.79 16 10 C 0.09 3.01 1.04 44.91 0.05 3.06 16 11 C -0.10 -3.70 4.90 30.59 0.15 -3.55 16 12 C -0.10 -4.72 4.98 30.60 0.15 -4.56 16 13 C 0.05 2.36 2.10 -11.54 -0.02 2.33 16 14 C -0.54 -30.34 8.56 25.60 0.22 -30.12 16 15 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 16 C 0.01 0.76 5.30 84.65 0.45 1.21 16 17 N -0.92 -53.51 11.32 21.45 0.24 -53.27 16 18 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 22 C -0.10 -4.30 5.14 30.58 0.16 -4.14 16 23 C -0.09 -3.39 5.20 30.58 0.16 -3.24 16 24 C 0.02 0.44 4.69 86.98 0.41 0.85 16 25 H 0.04 0.83 8.04 -2.39 -0.02 0.82 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 0.89 7.71 -2.39 -0.02 0.87 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.06 1.94 5.25 -2.39 -0.01 1.93 16 34 H 0.04 1.30 5.74 -2.39 -0.01 1.28 16 35 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.06 2.03 6.58 -2.39 -0.02 2.01 16 37 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 3.35 6.07 -2.39 -0.01 3.33 16 39 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 40 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 41 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.06 2.02 6.98 -2.39 -0.02 2.01 16 44 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.05 1.42 6.88 -2.39 -0.02 1.40 16 46 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -62.74 337.30 0.88 -61.86 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.93 Total: 16.50 kcal Atomic # 6 Polarization: -43.69 SS G_CDS: 3.48 Total: -40.21 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: -3.93 Total: -72.06 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -1.63 Total: -12.51 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -62.74 0.88 -61.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338147.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.168 kcal (2) G-P(sol) polarization free energy of solvation -62.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds