Wall clock time and date at job start Tue Mar 31 2020 02:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47091 * 2 1 4 4 C 1.53005 * 109.47255 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47182 * 179.97438 * 4 3 2 6 6 C 1.37095 * 120.00257 * 266.44508 * 5 4 3 7 7 H 1.08002 * 120.00133 * 143.15754 * 6 5 4 8 8 C 1.38952 * 119.99760 * 323.15999 * 6 5 4 9 9 N 1.31405 * 120.00250 * 339.93735 * 8 6 5 10 10 Si 1.86802 * 119.99713 * 159.93768 * 8 6 5 11 11 H 1.48504 * 109.47384 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47244 * 120.00163 * 10 8 6 13 13 H 1.48501 * 109.47008 * 239.99978 * 10 8 6 14 14 C 1.34782 * 119.99786 * 86.44721 * 5 4 3 15 15 O 1.21291 * 120.00016 * 359.97438 * 14 5 4 16 16 C 1.50697 * 119.99636 * 179.97438 * 14 5 4 17 17 H 1.08996 * 115.55875 * 48.91245 * 16 14 5 18 18 C 1.53039 * 117.50102 * 194.65609 * 16 14 5 19 19 C 1.52812 * 59.96595 * 107.47462 * 18 16 14 20 20 C 1.53153 * 117.74903 * 107.63175 * 19 18 16 21 21 C 1.53182 * 108.88028 * 199.62013 * 20 19 18 22 22 C 1.52931 * 109.45464 * 303.43569 * 21 20 19 23 23 C 1.52943 * 109.82408 * 62.98376 * 22 21 20 24 24 C 1.53154 * 117.74786 * 252.37294 * 19 18 16 25 25 H 1.09003 * 109.46869 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46726 * 300.00073 * 1 2 3 27 27 H 1.08992 * 109.47009 * 60.00187 * 1 2 3 28 28 H 1.09004 * 109.47327 * 239.99866 * 2 1 3 29 29 H 1.09004 * 109.47285 * 119.99620 * 2 1 3 30 30 H 1.09001 * 109.46909 * 299.99207 * 3 2 1 31 31 H 1.08988 * 109.47218 * 60.00068 * 3 2 1 32 32 H 1.08999 * 109.46964 * 300.00040 * 4 3 2 33 33 H 1.09000 * 109.47106 * 59.99347 * 4 3 2 34 34 H 0.96998 * 120.00311 * 179.97438 * 9 8 6 35 35 H 1.09003 * 117.50378 * 214.95324 * 18 16 14 36 36 H 1.09006 * 117.50536 * 359.97438 * 18 16 14 37 37 H 1.09004 * 109.56503 * 319.43925 * 20 19 18 38 38 H 1.08990 * 109.57104 * 79.79840 * 20 19 18 39 39 H 1.09005 * 109.46805 * 183.44043 * 21 20 19 40 40 H 1.09000 * 109.47624 * 63.43531 * 21 20 19 41 41 H 1.09002 * 109.41638 * 302.87927 * 22 21 20 42 42 H 1.08995 * 109.41714 * 183.09540 * 22 21 20 43 43 H 1.09002 * 109.47739 * 177.02163 * 23 22 21 44 44 H 1.09002 * 109.47439 * 57.00336 * 23 22 21 45 45 H 1.09001 * 109.56607 * 280.19043 * 24 19 18 46 46 H 1.08996 * 109.57158 * 40.55242 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.3557 3.4452 -1.1865 7 1 4.1395 4.4955 -1.3147 8 6 4.9354 2.7236 -2.2229 9 7 5.5539 1.5921 -1.9702 10 14 4.8353 3.3622 -3.9756 11 1 4.0906 4.6468 -3.9927 12 1 6.2066 3.5773 -4.5031 13 1 4.1285 2.3696 -4.8244 14 6 4.2152 3.4835 1.1635 15 8 3.9517 2.9339 2.2121 16 6 4.7181 4.9041 1.1629 17 1 4.2153 5.5806 0.4718 18 6 5.2006 5.4836 2.4946 19 6 6.2109 5.1246 1.4058 20 6 6.8913 6.2745 0.6572 21 6 7.4550 5.7414 -0.6636 22 6 8.4091 4.5806 -0.3785 23 6 7.6438 3.4285 0.2743 24 6 7.0863 3.8872 1.6252 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 3.9337 0.9286 0.8891 33 1 3.9330 0.9288 -0.8908 34 1 5.9582 1.0882 -2.6937 35 1 5.0150 6.5416 2.6800 36 1 5.1539 4.8374 3.3712 37 1 6.1625 7.0590 0.4530 38 1 7.7022 6.6763 1.2645 39 1 7.9946 6.5379 -1.1761 40 1 6.6367 5.3929 -1.2936 41 1 9.1989 4.9173 0.2930 42 1 8.8519 4.2376 -1.3136 43 1 8.3172 2.5850 0.4266 44 1 6.8217 3.1249 -0.3739 45 1 7.9098 4.1366 2.2943 46 1 6.4869 3.0889 2.0629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181907509.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:08 Heat of formation + Delta-G solvation = -45.970183 kcal Electronic energy + Delta-G solvation = -23908.228627 eV Core-core repulsion = 20797.138484 eV Total energy + Delta-G solvation = -3111.090142 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.55908 -37.50034 -35.37768 -33.94189 -33.78787 -31.42782 -30.23190 -28.57494 -26.91184 -24.88428 -23.96447 -22.12075 -21.62514 -20.41748 -20.32026 -19.05258 -18.14948 -16.41834 -15.97791 -14.98557 -14.70585 -14.56204 -14.40134 -13.84836 -13.65527 -13.41529 -13.07377 -12.97173 -12.40882 -12.26091 -12.14962 -11.98141 -11.65888 -11.60423 -11.30536 -11.22463 -11.04755 -10.98352 -10.56430 -10.52601 -10.44615 -10.43066 -10.30346 -10.14137 -9.93328 -9.63475 -9.50734 -9.20971 -8.95279 -8.93001 -8.30563 -7.44471 -6.33678 -4.01759 3.09644 3.22316 3.24346 3.82023 4.09467 4.47628 4.79093 4.98990 5.29322 5.35866 5.47386 5.50336 5.56111 5.61844 5.68932 5.78798 5.86038 5.97702 6.03373 6.09942 6.15481 6.22120 6.24129 6.26140 6.34359 6.39843 6.42681 6.43199 6.48250 6.52964 6.61912 6.65703 6.76839 6.82843 6.85695 6.87136 6.89859 6.99024 7.09505 7.17815 7.39033 7.52534 7.60429 7.98946 8.43143 9.12014 9.58736 10.02074 10.66950 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014581 B = 0.008003 C = 0.005979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.797994 B = 3497.793923 C = 4682.176377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.115 3.885 5 N -0.433 5.433 6 C -0.325 4.325 7 H 0.086 0.914 8 C 0.048 3.952 9 N -0.856 5.856 10 Si 0.900 3.100 11 H -0.269 1.269 12 H -0.281 1.281 13 H -0.281 1.281 14 C 0.503 3.497 15 O -0.607 6.607 16 C -0.139 4.139 17 H 0.108 0.892 18 C -0.165 4.165 19 C -0.090 4.090 20 C -0.075 4.075 21 C -0.117 4.117 22 C -0.108 4.108 23 C -0.132 4.132 24 C -0.076 4.076 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.106 0.894 34 H 0.267 0.733 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.051 0.949 43 H 0.044 0.956 44 H 0.118 0.882 45 H 0.049 0.951 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.568 3.764 0.718 3.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.167 4.167 4 C -0.008 4.008 5 N -0.150 5.150 6 C -0.453 4.453 7 H 0.103 0.897 8 C -0.158 4.158 9 N -0.493 5.493 10 Si 0.727 3.273 11 H -0.193 1.193 12 H -0.207 1.207 13 H -0.207 1.207 14 C 0.292 3.708 15 O -0.493 6.493 16 C -0.160 4.160 17 H 0.126 0.874 18 C -0.202 4.202 19 C -0.090 4.090 20 C -0.112 4.112 21 C -0.155 4.155 22 C -0.146 4.146 23 C -0.169 4.169 24 C -0.113 4.113 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.124 0.876 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.137 0.863 45 H 0.067 0.933 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.543 3.317 1.084 3.531 hybrid contribution -0.046 0.342 -1.093 1.147 sum 0.497 3.659 -0.009 3.693 Atomic orbital electron populations 1.21755 0.96714 1.00621 1.01443 1.21427 0.94911 0.97845 1.01526 1.21911 0.98146 0.95368 1.01237 1.21397 0.90912 0.85129 1.03371 1.43358 1.55288 1.11750 1.04588 1.19323 1.40021 0.96022 0.89914 0.89660 1.25210 0.94443 0.96393 0.99715 1.69902 1.31286 1.15534 1.32584 0.86286 0.78179 0.79255 0.83561 1.19290 1.20694 1.20677 1.19478 0.80429 0.87227 0.83705 1.90508 1.56851 1.69874 1.32117 1.22034 0.97644 0.96769 0.99563 0.87436 1.23014 1.03584 1.00251 0.93376 1.21339 0.89741 0.97434 1.00511 1.21089 0.98841 0.95339 0.95934 1.21517 0.99676 0.97182 0.97106 1.21375 0.97371 0.96254 0.99569 1.21729 1.01742 0.96001 0.97424 1.21055 0.97464 0.95262 0.97508 0.93473 0.93118 0.93070 0.92296 0.92481 0.92405 0.93014 0.93230 0.87622 0.92221 0.89468 0.88438 0.92429 0.92348 0.93267 0.90500 0.93677 0.93014 0.93735 0.86348 0.93283 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.12 -2.02 5.93 -26.73 -0.16 -2.18 16 3 C -0.13 -2.60 5.52 -26.73 -0.15 -2.75 16 4 C 0.12 2.70 4.93 -4.04 -0.02 2.68 16 5 N -0.43 -10.44 2.53 -114.81 -0.29 -10.73 16 6 C -0.32 -7.73 7.65 -14.93 -0.11 -7.85 16 7 H 0.09 2.02 6.89 -52.49 -0.36 1.65 16 8 C 0.05 1.13 4.41 -17.47 -0.08 1.05 16 9 N -0.86 -20.98 10.73 55.50 0.60 -20.39 16 10 Si 0.90 18.79 29.60 -169.99 -5.03 13.76 16 11 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 12 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 13 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 14 C 0.50 12.10 5.86 -10.98 -0.06 12.03 16 15 O -0.61 -16.08 15.71 5.55 0.09 -16.00 16 16 C -0.14 -2.85 4.69 -91.83 -0.43 -3.29 16 17 H 0.11 2.13 7.37 -51.93 -0.38 1.75 16 18 C -0.16 -2.96 9.50 -26.81 -0.25 -3.22 16 19 C -0.09 -1.64 1.97 -154.52 -0.31 -1.94 16 20 C -0.07 -1.17 5.67 -26.56 -0.15 -1.32 16 21 C -0.12 -1.93 5.93 -26.67 -0.16 -2.09 16 22 C -0.11 -1.84 5.82 -26.80 -0.16 -2.00 16 23 C -0.13 -2.62 5.93 -26.67 -0.16 -2.78 16 24 C -0.08 -1.47 5.29 -26.56 -0.14 -1.61 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.05 1.11 8.14 -51.94 -0.42 0.69 16 32 H 0.05 1.22 7.53 -51.93 -0.39 0.83 16 33 H 0.11 2.59 5.45 -51.93 -0.28 2.30 16 34 H 0.27 6.30 8.31 -40.82 -0.34 5.96 16 35 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.10 1.88 7.75 -51.93 -0.40 1.48 16 37 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.12 2.74 5.74 -51.93 -0.30 2.44 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.07 1.48 6.72 -51.93 -0.35 1.13 16 LS Contribution 354.90 15.07 5.35 5.35 Total: -1.00 -26.13 354.90 -9.62 -35.75 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -8.37 Total: 9.26 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -1.97 Total: -17.01 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 0.30 Total: -31.12 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.09 Total: -16.00 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -26.13 -9.62 -35.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181907509.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.215 kcal (2) G-P(sol) polarization free energy of solvation -26.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds