Wall clock time and date at job start Tue Mar 31 2020 02:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47091 * 2 1 4 4 C 1.53005 * 109.47255 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47182 * 179.97438 * 4 3 2 6 6 C 1.37095 * 120.00257 * 266.44508 * 5 4 3 7 7 H 1.08002 * 120.00133 * 143.15754 * 6 5 4 8 8 C 1.38952 * 119.99760 * 323.15999 * 6 5 4 9 9 N 1.31405 * 120.00250 * 339.93735 * 8 6 5 10 10 Si 1.86802 * 119.99713 * 159.93768 * 8 6 5 11 11 H 1.48504 * 109.47384 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47244 * 120.00163 * 10 8 6 13 13 H 1.48501 * 109.47008 * 239.99978 * 10 8 6 14 14 C 1.34782 * 119.99786 * 86.44721 * 5 4 3 15 15 O 1.21291 * 120.00016 * 359.97438 * 14 5 4 16 16 C 1.50697 * 119.99636 * 179.97438 * 14 5 4 17 17 H 1.08996 * 115.55875 * 48.91245 * 16 14 5 18 18 C 1.53039 * 117.50102 * 194.65609 * 16 14 5 19 19 C 1.52812 * 59.96595 * 107.47462 * 18 16 14 20 20 C 1.53153 * 117.74903 * 107.63175 * 19 18 16 21 21 C 1.53182 * 108.88028 * 199.62013 * 20 19 18 22 22 C 1.52931 * 109.45464 * 303.43569 * 21 20 19 23 23 C 1.52943 * 109.82408 * 62.98376 * 22 21 20 24 24 C 1.53154 * 117.74786 * 252.37294 * 19 18 16 25 25 H 1.09003 * 109.46869 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46726 * 300.00073 * 1 2 3 27 27 H 1.08992 * 109.47009 * 60.00187 * 1 2 3 28 28 H 1.09004 * 109.47327 * 239.99866 * 2 1 3 29 29 H 1.09004 * 109.47285 * 119.99620 * 2 1 3 30 30 H 1.09001 * 109.46909 * 299.99207 * 3 2 1 31 31 H 1.08988 * 109.47218 * 60.00068 * 3 2 1 32 32 H 1.08999 * 109.46964 * 300.00040 * 4 3 2 33 33 H 1.09000 * 109.47106 * 59.99347 * 4 3 2 34 34 H 0.96998 * 120.00311 * 179.97438 * 9 8 6 35 35 H 1.09003 * 117.50378 * 214.95324 * 18 16 14 36 36 H 1.09006 * 117.50536 * 359.97438 * 18 16 14 37 37 H 1.09004 * 109.56503 * 319.43925 * 20 19 18 38 38 H 1.08990 * 109.57104 * 79.79840 * 20 19 18 39 39 H 1.09005 * 109.46805 * 183.44043 * 21 20 19 40 40 H 1.09000 * 109.47624 * 63.43531 * 21 20 19 41 41 H 1.09002 * 109.41638 * 302.87927 * 22 21 20 42 42 H 1.08995 * 109.41714 * 183.09540 * 22 21 20 43 43 H 1.09002 * 109.47739 * 177.02163 * 23 22 21 44 44 H 1.09002 * 109.47439 * 57.00336 * 23 22 21 45 45 H 1.09001 * 109.56607 * 280.19043 * 24 19 18 46 46 H 1.08996 * 109.57158 * 40.55242 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.3557 3.4452 -1.1865 7 1 4.1395 4.4955 -1.3147 8 6 4.9354 2.7236 -2.2229 9 7 5.5539 1.5921 -1.9702 10 14 4.8353 3.3622 -3.9756 11 1 4.0906 4.6468 -3.9927 12 1 6.2066 3.5773 -4.5031 13 1 4.1285 2.3696 -4.8244 14 6 4.2152 3.4835 1.1635 15 8 3.9517 2.9339 2.2121 16 6 4.7181 4.9041 1.1629 17 1 4.2153 5.5806 0.4718 18 6 5.2006 5.4836 2.4946 19 6 6.2109 5.1246 1.4058 20 6 6.8913 6.2745 0.6572 21 6 7.4550 5.7414 -0.6636 22 6 8.4091 4.5806 -0.3785 23 6 7.6438 3.4285 0.2743 24 6 7.0863 3.8872 1.6252 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 3.9337 0.9286 0.8891 33 1 3.9330 0.9288 -0.8908 34 1 5.9582 1.0882 -2.6937 35 1 5.0150 6.5416 2.6800 36 1 5.1539 4.8374 3.3712 37 1 6.1625 7.0590 0.4530 38 1 7.7022 6.6763 1.2645 39 1 7.9946 6.5379 -1.1761 40 1 6.6367 5.3929 -1.2936 41 1 9.1989 4.9173 0.2930 42 1 8.8519 4.2376 -1.3136 43 1 8.3172 2.5850 0.4266 44 1 6.8217 3.1249 -0.3739 45 1 7.9098 4.1366 2.2943 46 1 6.4869 3.0889 2.0629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181907509.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:08 Heat of formation + Delta-G solvation = -56.626540 kcal Electronic energy + Delta-G solvation = -23908.690721 eV Core-core repulsion = 20797.138484 eV Total energy + Delta-G solvation = -3111.552237 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.21801 -39.17421 -37.14767 -35.51687 -35.36187 -33.28934 -31.65471 -30.18057 -28.35250 -26.75466 -25.55060 -23.54685 -23.19311 -21.92080 -21.83843 -20.85329 -19.71133 -18.15011 -17.80811 -16.56310 -16.42087 -16.17618 -16.10905 -15.37690 -15.18482 -15.02449 -14.50022 -14.43825 -13.96241 -13.83381 -13.62376 -13.58639 -13.18728 -13.05503 -13.00688 -12.92507 -12.71243 -12.46225 -12.13004 -12.05522 -11.99397 -11.91184 -11.81090 -11.74568 -11.47860 -11.33610 -10.95991 -10.84985 -10.65111 -10.45661 -10.12147 -9.35000 -8.18642 -5.92171 1.41333 1.50274 1.59120 2.03255 2.34733 2.84529 3.11691 3.21627 3.82343 3.93872 4.02908 4.07402 4.10743 4.19819 4.30232 4.36525 4.40581 4.50305 4.58680 4.63075 4.67501 4.74813 4.83699 4.87083 4.89206 4.93455 4.99013 4.99969 5.07333 5.08851 5.11225 5.17768 5.20856 5.29210 5.36253 5.43609 5.44825 5.50298 5.52939 5.59362 5.61963 5.63832 5.95729 6.11757 6.53951 7.24156 7.70158 8.14745 8.82789 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014581 B = 0.008003 C = 0.005979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.797994 B = 3497.793923 C = 4682.176377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.115 4.115 4 C 0.118 3.882 5 N -0.440 5.440 6 C -0.331 4.331 7 H 0.088 0.912 8 C 0.019 3.981 9 N -0.880 5.880 10 Si 0.958 3.042 11 H -0.261 1.261 12 H -0.280 1.280 13 H -0.283 1.283 14 C 0.490 3.510 15 O -0.644 6.644 16 C -0.164 4.164 17 H 0.115 0.885 18 C -0.147 4.147 19 C -0.080 4.080 20 C -0.069 4.069 21 C -0.116 4.116 22 C -0.103 4.103 23 C -0.134 4.134 24 C -0.072 4.072 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.035 0.965 32 H 0.022 0.978 33 H 0.094 0.906 34 H 0.268 0.732 35 H 0.125 0.875 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.070 0.930 42 H 0.049 0.951 43 H 0.034 0.966 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.970 5.940 -0.104 6.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.154 4.154 4 C -0.006 4.006 5 N -0.156 5.156 6 C -0.459 4.459 7 H 0.105 0.895 8 C -0.184 4.184 9 N -0.518 5.518 10 Si 0.783 3.217 11 H -0.184 1.184 12 H -0.206 1.206 13 H -0.209 1.209 14 C 0.281 3.719 15 O -0.533 6.533 16 C -0.185 4.185 17 H 0.133 0.867 18 C -0.185 4.185 19 C -0.081 4.081 20 C -0.106 4.106 21 C -0.154 4.154 22 C -0.140 4.140 23 C -0.171 4.171 24 C -0.110 4.110 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.143 0.857 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.103 0.897 45 H 0.091 0.909 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 0.940 5.499 0.251 5.584 hybrid contribution -0.128 -0.424 -0.799 0.913 sum 0.813 5.075 -0.548 5.169 Atomic orbital electron populations 1.21705 0.94130 1.02336 1.01749 1.21405 0.97135 0.95220 1.01582 1.21772 0.95756 0.97664 1.00161 1.21336 0.92946 0.85028 1.01299 1.43566 1.55108 1.11807 1.05070 1.19438 1.40350 0.96199 0.89878 0.89452 1.25806 0.93736 0.96407 1.02458 1.70003 1.31775 1.16547 1.33426 0.85401 0.78009 0.78887 0.79400 1.18435 1.20583 1.20923 1.20140 0.79914 0.88810 0.83047 1.90463 1.58442 1.71211 1.33223 1.21997 0.99824 0.94578 1.02067 0.86717 1.23077 1.02131 1.01697 0.91556 1.21483 0.88390 0.97765 1.00475 1.21139 0.99824 0.94277 0.95342 1.21505 0.98832 0.97628 0.97396 1.21337 0.97716 0.95291 0.99687 1.21674 1.00870 0.97279 0.97321 1.20985 0.97805 0.94752 0.97434 0.91062 0.93086 0.92509 0.91976 0.92722 0.92617 0.94633 0.95916 0.88774 0.92225 0.85719 0.90385 0.90677 0.89583 0.90207 0.93406 0.91184 0.93191 0.94672 0.89684 0.90894 0.95887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.91 71.98 0.71 -3.17 16 2 C -0.12 -3.94 5.93 30.59 0.18 -3.75 16 3 C -0.11 -4.83 5.52 30.60 0.17 -4.67 16 4 C 0.12 5.80 4.93 86.38 0.43 6.22 16 5 N -0.44 -22.09 2.53 -635.53 -1.61 -23.70 16 6 C -0.33 -16.06 7.65 84.04 0.64 -15.41 16 7 H 0.09 4.15 6.89 -2.91 -0.02 4.13 16 8 C 0.02 0.93 4.41 84.93 0.37 1.30 16 9 N -0.88 -44.37 10.73 21.66 0.23 -44.14 16 10 Si 0.96 38.33 29.60 68.60 2.03 40.36 16 11 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 12 H -0.28 -11.12 7.11 99.48 0.71 -10.42 16 13 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 14 C 0.49 24.56 5.86 87.66 0.51 25.07 16 15 O -0.64 -36.00 15.71 -3.06 -0.05 -36.05 16 16 C -0.16 -6.71 4.69 -11.58 -0.05 -6.76 16 17 H 0.11 4.47 7.37 -2.39 -0.02 4.45 16 18 C -0.15 -5.08 9.50 30.54 0.29 -4.79 16 19 C -0.08 -2.83 1.97 -52.19 -0.10 -2.93 16 20 C -0.07 -1.90 5.67 30.71 0.17 -1.72 16 21 C -0.12 -3.47 5.93 30.63 0.18 -3.29 16 22 C -0.10 -3.29 5.82 30.55 0.18 -3.11 16 23 C -0.13 -5.37 5.93 30.64 0.18 -5.18 16 24 C -0.07 -2.82 5.29 30.71 0.16 -2.65 16 25 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.02 1.20 7.53 -2.39 -0.02 1.18 16 33 H 0.09 4.84 5.45 -2.39 -0.01 4.83 16 34 H 0.27 12.91 8.31 -92.71 -0.77 12.14 16 35 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 36 H 0.08 3.01 7.75 -2.38 -0.02 2.99 16 37 H 0.07 1.86 8.09 -2.38 -0.02 1.84 16 38 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.08 4.04 5.74 -2.39 -0.01 4.03 16 45 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.02 1.07 6.72 -2.39 -0.02 1.05 16 Total: -1.00 -59.36 354.90 5.56 -53.80 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: 0.92 Total: 34.56 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 4.03 Total: -24.85 kcal Atomic # 7 Polarization: -66.46 SS G_CDS: -1.38 Total: -67.83 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.05 Total: -36.05 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Total: -59.36 5.56 -53.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181907509.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.827 kcal (2) G-P(sol) polarization free energy of solvation -59.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds