Wall clock time and date at job start Tue Mar 31 2020 02:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47024 * 2 1 4 4 C 1.53001 * 109.47275 * 179.97438 * 3 2 1 5 5 N 1.46491 * 109.47318 * 179.97438 * 4 3 2 6 6 C 1.37101 * 120.00274 * 264.50121 * 5 4 3 7 7 H 1.07993 * 119.99871 * 144.15236 * 6 5 4 8 8 C 1.38951 * 119.99903 * 324.16453 * 6 5 4 9 9 N 1.31403 * 120.00260 * 157.17684 * 8 6 5 10 10 Si 1.86808 * 119.99742 * 337.17034 * 8 6 5 11 11 H 1.48500 * 109.47267 * 95.39493 * 10 8 6 12 12 H 1.48504 * 109.46753 * 215.39249 * 10 8 6 13 13 H 1.48501 * 109.47052 * 335.39087 * 10 8 6 14 14 C 1.34782 * 120.00176 * 84.23008 * 5 4 3 15 15 O 1.21294 * 119.99639 * 354.98080 * 14 5 4 16 16 C 1.50699 * 120.00065 * 174.98207 * 14 5 4 17 17 H 1.08998 * 115.55313 * 305.97898 * 16 14 5 18 18 C 1.53036 * 117.50040 * 160.23097 * 16 14 5 19 19 C 1.52807 * 59.96457 * 252.52866 * 18 16 14 20 20 C 1.53151 * 117.75002 * 107.63371 * 19 18 16 21 21 C 1.53183 * 108.88460 * 199.61714 * 20 19 18 22 22 C 1.52939 * 109.45462 * 303.43559 * 21 20 19 23 23 C 1.52946 * 109.81855 * 62.98338 * 22 21 20 24 24 C 1.53148 * 117.74971 * 252.37200 * 19 18 16 25 25 H 1.08997 * 109.47403 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47398 * 300.00664 * 1 2 3 27 27 H 1.09000 * 109.47057 * 60.00749 * 1 2 3 28 28 H 1.08989 * 109.47490 * 239.99561 * 2 1 3 29 29 H 1.09000 * 109.47057 * 119.99251 * 2 1 3 30 30 H 1.09002 * 109.47575 * 59.99444 * 3 2 1 31 31 H 1.09000 * 109.46592 * 299.99536 * 3 2 1 32 32 H 1.09002 * 109.47109 * 59.99359 * 4 3 2 33 33 H 1.09007 * 109.46733 * 300.00003 * 4 3 2 34 34 H 0.96998 * 120.00323 * 179.97438 * 9 8 6 35 35 H 1.08994 * 117.50639 * 0.02562 * 18 16 14 36 36 H 1.09007 * 117.50077 * 145.05212 * 18 16 14 37 37 H 1.09000 * 109.57073 * 319.43957 * 20 19 18 38 38 H 1.09005 * 109.56827 * 79.79729 * 20 19 18 39 39 H 1.09002 * 109.46901 * 183.44020 * 21 20 19 40 40 H 1.09004 * 109.47004 * 63.43642 * 21 20 19 41 41 H 1.08991 * 109.41522 * 302.87730 * 22 21 20 42 42 H 1.09004 * 109.41098 * 183.08561 * 22 21 20 43 43 H 1.08997 * 109.47669 * 177.01881 * 23 22 21 44 44 H 1.09003 * 109.48008 * 57.01019 * 23 22 21 45 45 H 1.08994 * 109.57208 * 280.19463 * 24 19 18 46 46 H 1.08997 * 109.57092 * 40.43588 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0582 2.8237 0.0000 6 6 4.3945 3.4315 -1.1820 7 1 4.1974 4.4838 -1.3233 8 6 4.9887 2.6933 -2.1983 9 7 4.9092 3.1063 -3.4432 10 14 5.9009 1.1138 -1.7947 11 1 4.9906 -0.0447 -1.9797 12 1 7.0710 0.9733 -2.6983 13 1 6.3665 1.1575 -0.3852 14 6 4.1718 3.4989 1.1610 15 8 3.7847 2.9966 2.1950 16 6 4.7795 4.8779 1.1744 17 1 5.7676 4.9607 0.7217 18 6 4.4757 5.7723 2.3784 19 6 3.8324 6.0680 1.0243 20 6 2.3381 5.7725 0.8650 21 6 2.0107 5.6626 -0.6274 22 6 2.4335 6.9494 -1.3377 23 6 3.9484 7.1286 -1.2279 24 6 4.3380 7.2858 0.2453 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.8933 -0.5138 -0.8898 29 1 1.8933 -0.5137 0.8901 30 1 1.6765 1.9565 0.8899 31 1 1.6766 1.9562 -0.8901 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9289 0.8909 34 1 5.3243 2.5912 -4.1526 35 1 3.8368 5.3632 3.1609 36 1 5.2643 6.4438 2.7183 37 1 2.0968 4.8328 1.3619 38 1 1.7567 6.5813 1.3078 39 1 0.9385 5.5130 -0.7541 40 1 2.5488 4.8172 -1.0561 41 1 1.9336 7.8000 -0.8744 42 1 2.1507 6.8927 -2.3888 43 1 4.2502 8.0184 -1.7804 44 1 4.4490 6.2548 -1.6449 45 1 3.8844 8.1912 0.6482 46 1 5.4225 7.3507 0.3330 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181907510.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:12 Heat of formation + Delta-G solvation = -47.818850 kcal Electronic energy + Delta-G solvation = -24064.345792 eV Core-core repulsion = 20953.175485 eV Total energy + Delta-G solvation = -3111.170307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.42789 -39.29889 -37.32065 -35.58275 -35.40286 -33.75885 -31.69627 -30.32824 -28.37155 -26.85642 -25.68052 -23.59897 -23.44701 -22.16865 -21.86874 -20.87934 -19.60101 -18.62584 -17.77580 -17.12386 -16.48934 -16.23902 -16.07136 -15.51860 -15.19447 -14.93944 -14.65100 -14.50552 -14.47124 -13.95793 -13.81512 -13.66679 -13.45709 -13.19574 -13.05768 -13.00776 -12.82193 -12.47354 -12.21245 -12.18368 -11.95689 -11.91129 -11.86926 -11.79493 -11.45427 -11.21455 -11.08304 -10.92779 -10.63375 -10.51394 -10.18251 -9.67782 -8.44380 -5.98370 1.15665 1.29963 1.39198 1.86595 2.19561 2.59894 2.90089 3.11993 3.76085 3.87465 3.91995 3.99815 4.05216 4.09215 4.21754 4.28105 4.33774 4.35492 4.47891 4.56330 4.58633 4.67047 4.72472 4.75557 4.84402 4.87421 4.89778 4.93825 5.00625 5.03422 5.05799 5.11398 5.18644 5.21516 5.26535 5.32443 5.39723 5.42368 5.48575 5.50142 5.54726 5.60576 5.75911 6.23339 6.44374 7.04933 7.52114 7.87859 8.67698 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013473 B = 0.008189 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.804494 B = 3418.413837 C = 4016.657463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.121 4.121 3 C -0.112 4.112 4 C 0.097 3.903 5 N -0.467 5.467 6 C -0.333 4.333 7 H 0.122 0.878 8 C 0.034 3.966 9 N -0.886 5.886 10 Si 0.906 3.094 11 H -0.264 1.264 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.505 3.495 15 O -0.625 6.625 16 C -0.171 4.171 17 H 0.112 0.888 18 C -0.141 4.141 19 C -0.085 4.085 20 C -0.074 4.074 21 C -0.136 4.136 22 C -0.104 4.104 23 C -0.120 4.120 24 C -0.070 4.070 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.276 0.724 35 H 0.085 0.915 36 H 0.122 0.878 37 H 0.032 0.968 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.043 0.957 45 H 0.089 0.911 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.342 4.540 4.233 7.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.159 4.159 3 C -0.151 4.151 4 C -0.026 4.026 5 N -0.186 5.186 6 C -0.460 4.460 7 H 0.139 0.861 8 C -0.170 4.170 9 N -0.524 5.524 10 Si 0.734 3.266 11 H -0.190 1.190 12 H -0.215 1.215 13 H -0.201 1.201 14 C 0.296 3.704 15 O -0.512 6.512 16 C -0.192 4.192 17 H 0.130 0.870 18 C -0.178 4.178 19 C -0.086 4.086 20 C -0.111 4.111 21 C -0.173 4.173 22 C -0.142 4.142 23 C -0.157 4.157 24 C -0.108 4.108 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.140 0.860 37 H 0.051 0.949 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.107 0.893 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.483 4.243 4.490 7.633 hybrid contribution 0.841 -1.266 -0.309 1.551 sum -3.642 2.977 4.181 6.294 Atomic orbital electron populations 1.21697 0.94055 1.02435 1.01812 1.21487 0.97458 0.95066 1.01932 1.21700 0.94155 0.98057 1.01150 1.21732 0.95865 0.84892 1.00078 1.43842 1.56749 1.11808 1.06151 1.19530 1.39251 0.98094 0.89111 0.86145 1.25717 0.96753 0.99737 0.94806 1.69807 1.41872 1.41201 0.99492 0.86482 0.79469 0.82367 0.78307 1.19032 1.21486 1.20120 1.19964 0.80319 0.87980 0.82151 1.90491 1.55367 1.71732 1.33626 1.22028 1.01293 0.89695 1.06197 0.86979 1.23091 1.03282 1.00654 0.90766 1.21571 0.93479 0.95082 0.98475 1.21041 0.93217 1.00174 0.96667 1.21774 1.00315 0.99975 0.95257 1.21349 0.96000 0.97161 0.99646 1.21541 0.96263 1.01408 0.96496 1.21140 1.00471 0.95203 0.93945 0.90951 0.92806 0.92799 0.92106 0.91747 0.93109 0.92667 0.92052 0.92687 0.91403 0.89601 0.85980 0.94868 0.90093 0.92777 0.91385 0.90687 0.92935 0.90734 0.93823 0.89293 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.91 71.98 0.71 -2.98 16 2 C -0.12 -3.83 5.93 30.59 0.18 -3.65 16 3 C -0.11 -4.43 5.50 30.60 0.17 -4.26 16 4 C 0.10 4.37 3.93 86.38 0.34 4.71 16 5 N -0.47 -22.35 2.22 -635.54 -1.41 -23.76 16 6 C -0.33 -16.68 7.76 84.04 0.65 -16.03 16 7 H 0.12 6.12 3.33 -2.91 -0.01 6.11 16 8 C 0.03 1.76 5.27 84.93 0.45 2.21 16 9 N -0.89 -47.53 13.96 21.66 0.30 -47.22 16 10 Si 0.91 41.86 25.00 68.60 1.72 43.57 16 11 H -0.26 -11.59 6.66 99.48 0.66 -10.93 16 12 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 14 C 0.50 23.73 5.69 87.66 0.50 24.23 16 15 O -0.62 -31.87 15.98 -3.07 -0.05 -31.92 16 16 C -0.17 -6.80 4.38 -11.58 -0.05 -6.85 16 17 H 0.11 4.51 8.14 -2.39 -0.02 4.49 16 18 C -0.14 -4.54 9.50 30.54 0.29 -4.25 16 19 C -0.09 -2.81 1.86 -52.20 -0.10 -2.91 16 20 C -0.07 -2.50 5.29 30.71 0.16 -2.34 16 21 C -0.14 -4.77 5.80 30.64 0.18 -4.59 16 22 C -0.10 -3.12 5.82 30.56 0.18 -2.94 16 23 C -0.12 -3.66 5.82 30.64 0.18 -3.48 16 24 C -0.07 -1.93 5.67 30.71 0.17 -1.75 16 25 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 2.11 8.01 -2.39 -0.02 2.09 16 31 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.06 2.81 3.36 -2.39 -0.01 2.80 16 33 H 0.05 2.50 7.68 -2.38 -0.02 2.48 16 34 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 35 H 0.09 2.99 7.81 -2.39 -0.02 2.98 16 36 H 0.12 3.14 8.14 -2.38 -0.02 3.12 16 37 H 0.03 1.32 6.88 -2.39 -0.02 1.30 16 38 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 39 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.07 2.94 4.67 -2.39 -0.01 2.93 16 41 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.04 1.70 6.03 -2.39 -0.01 1.68 16 45 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.07 1.78 8.09 -2.39 -0.02 1.76 16 Total: -1.00 -58.90 344.34 5.47 -53.43 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.90 Total: 30.78 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: 4.01 Total: -24.88 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -1.11 Total: -70.98 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.05 Total: -31.92 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.72 Total: 43.57 kcal Total: -58.90 5.47 -53.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181907510.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.612 kcal (2) G-P(sol) polarization free energy of solvation -58.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds