Wall clock time and date at job start Tue Mar 31 2020 02:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46828 * 2 1 4 4 C 1.53009 * 109.47050 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46873 * 180.02562 * 4 3 2 6 6 C 1.37101 * 119.99710 * 264.37562 * 5 4 3 7 7 H 1.08001 * 119.99595 * 136.53969 * 6 5 4 8 8 C 1.38953 * 120.00070 * 316.54094 * 6 5 4 9 9 N 1.31407 * 120.00029 * 350.31436 * 8 6 5 10 10 Si 1.86802 * 119.99879 * 170.32002 * 8 6 5 11 11 H 1.48495 * 109.46914 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47010 * 119.99866 * 10 8 6 13 13 H 1.48498 * 109.46837 * 239.99760 * 10 8 6 14 14 C 1.34774 * 120.00204 * 84.37996 * 5 4 3 15 15 O 1.21295 * 119.99832 * 6.25077 * 14 5 4 16 16 C 1.50697 * 119.99862 * 186.25784 * 14 5 4 17 17 C 1.52948 * 109.41252 * 152.81784 * 16 14 5 18 18 C 1.53179 * 109.45094 * 183.09148 * 17 16 14 19 19 C 1.53150 * 108.88472 * 303.42798 * 18 17 16 20 20 C 1.52805 * 117.75168 * 199.62503 * 19 18 17 21 21 C 1.52839 * 117.67784 * 268.50596 * 19 18 17 22 22 C 1.53150 * 115.00404 * 53.93539 * 19 18 17 23 23 C 1.52940 * 109.41294 * 273.17236 * 16 14 5 24 24 H 1.08997 * 109.47315 * 59.99752 * 1 2 3 25 25 H 1.09003 * 109.46908 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47213 * 299.99644 * 1 2 3 27 27 H 1.09001 * 109.47213 * 240.00356 * 2 1 3 28 28 H 1.08997 * 109.47315 * 120.00247 * 2 1 3 29 29 H 1.09003 * 109.47340 * 60.00510 * 3 2 1 30 30 H 1.08997 * 109.47375 * 300.00211 * 3 2 1 31 31 H 1.09001 * 109.47014 * 60.00342 * 4 3 2 32 32 H 1.09002 * 109.46953 * 300.00044 * 4 3 2 33 33 H 0.97000 * 120.00554 * 180.02562 * 9 8 6 34 34 H 1.08993 * 109.35681 * 32.99593 * 16 14 5 35 35 H 1.08997 * 109.47556 * 63.09751 * 17 16 14 36 36 H 1.09003 * 109.47497 * 303.08472 * 17 16 14 37 37 H 1.09002 * 109.56961 * 183.60136 * 18 17 16 38 38 H 1.09003 * 109.56838 * 63.24819 * 18 17 16 39 39 H 1.08996 * 117.50230 * 0.14356 * 20 19 18 40 40 H 1.08999 * 117.49997 * 215.10857 * 20 19 18 41 41 H 1.09001 * 117.50617 * 144.77270 * 21 19 18 42 42 H 1.09001 * 117.52712 * 359.71882 * 21 19 18 43 43 H 1.08997 * 109.57085 * 65.88888 * 22 19 18 44 44 H 1.09004 * 109.56811 * 186.24984 * 22 19 18 45 45 H 1.09006 * 109.47305 * 296.90540 * 23 16 14 46 46 H 1.09002 * 109.47319 * 56.91404 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8239 0.0013 6 6 4.3969 3.4317 -1.1801 7 1 4.0911 4.4498 -1.3705 8 6 5.1336 2.7378 -2.1322 9 7 5.6676 1.5756 -1.8310 10 14 5.3649 3.4573 -3.8406 11 1 4.6686 4.7662 -3.9248 12 1 6.8135 3.6487 -4.1051 13 1 4.7958 2.5286 -4.8499 14 6 4.1746 3.4970 1.1631 15 8 3.9845 2.9262 2.2163 16 6 4.5407 4.9588 1.1535 17 6 3.9735 5.6331 2.4036 18 6 4.2786 7.1335 2.3568 19 6 5.7916 7.3276 2.2197 20 6 6.3724 8.6870 2.6063 21 6 6.6083 7.4702 3.5037 22 6 6.4357 6.5846 1.0456 23 6 6.0633 5.1013 1.1331 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9338 0.9287 -0.8891 32 1 3.9330 0.9289 0.8909 33 1 6.1822 1.0913 -2.4955 34 1 4.1208 5.4306 0.2652 35 1 4.4312 5.1967 3.2913 36 1 2.8945 5.4827 2.4398 37 1 3.9318 7.6054 3.2761 38 1 3.7739 7.5822 1.5012 39 1 5.6783 9.4481 2.9624 40 1 7.2183 9.0562 2.0263 41 1 7.6093 7.0388 3.5141 42 1 6.0695 7.4309 4.4504 43 1 6.0689 6.9982 0.1063 44 1 7.5193 6.6925 1.0956 45 1 6.4805 4.6752 2.0456 46 1 6.4661 4.5739 0.2684 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183882579.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:56 Heat of formation + Delta-G solvation = -47.617139 kcal Electronic energy + Delta-G solvation = -23061.975101 eV Core-core repulsion = 19950.813541 eV Total energy + Delta-G solvation = -3111.161560 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.49945 -38.09439 -35.40554 -34.03767 -33.79294 -31.41214 -30.47791 -28.72723 -27.10698 -24.82935 -23.14113 -22.37166 -22.24537 -20.99522 -20.23560 -19.00052 -18.26696 -16.76452 -15.83703 -15.13140 -14.86450 -14.72545 -14.53494 -14.23205 -13.76259 -13.36057 -13.16644 -12.92999 -12.76567 -12.27043 -12.18806 -11.83423 -11.78182 -11.62192 -11.49024 -11.36520 -11.20809 -11.17313 -10.90319 -10.58327 -10.54653 -10.46310 -10.32737 -10.24679 -9.94762 -9.72469 -9.69339 -9.54679 -9.35214 -9.01295 -8.23669 -7.35269 -6.29315 -4.10446 3.11373 3.21475 3.23992 3.93796 3.98782 4.14761 4.78369 4.84532 4.97654 5.00779 5.11938 5.25890 5.50741 5.51422 5.62987 5.69313 5.72638 5.74607 5.78205 5.93466 5.96115 6.02412 6.02950 6.11433 6.21824 6.26163 6.26748 6.33602 6.38862 6.42708 6.44260 6.47453 6.56675 6.68797 6.70327 6.75459 6.79693 6.87794 7.02611 7.04802 7.20765 7.41723 7.57010 8.09786 8.43118 9.12470 9.60002 10.03241 10.72041 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014487 B = 0.006025 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.272073 B = 4646.126364 C = 6041.265536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.117 3.883 5 N -0.443 5.443 6 C -0.332 4.332 7 H 0.086 0.914 8 C 0.044 3.956 9 N -0.868 5.868 10 Si 0.912 3.088 11 H -0.268 1.268 12 H -0.281 1.281 13 H -0.281 1.281 14 C 0.482 3.518 15 O -0.605 6.605 16 C -0.084 4.084 17 C -0.096 4.096 18 C -0.079 4.079 19 C -0.114 4.114 20 C -0.183 4.183 21 C -0.175 4.175 22 C -0.078 4.078 23 C -0.096 4.096 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.049 0.951 33 H 0.267 0.733 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.828 7.332 2.943 8.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.167 4.167 4 C -0.006 4.006 5 N -0.161 5.161 6 C -0.460 4.460 7 H 0.104 0.896 8 C -0.161 4.161 9 N -0.505 5.505 10 Si 0.739 3.261 11 H -0.192 1.192 12 H -0.207 1.207 13 H -0.207 1.207 14 C 0.271 3.729 15 O -0.491 6.491 16 C -0.106 4.106 17 C -0.134 4.134 18 C -0.116 4.116 19 C -0.114 4.114 20 C -0.220 4.220 21 C -0.212 4.212 22 C -0.115 4.115 23 C -0.134 4.134 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.806 6.872 3.334 7.848 hybrid contribution 0.208 0.294 -1.010 1.072 sum -1.598 7.165 2.324 7.701 Atomic orbital electron populations 1.21760 0.96722 1.00632 1.01420 1.21426 0.94869 0.97829 1.01588 1.21935 0.98292 0.95396 1.01066 1.21364 0.90543 0.85455 1.03280 1.43391 1.55909 1.11763 1.05007 1.19393 1.33092 0.99629 0.93871 0.89640 1.25431 0.94599 0.96111 0.99968 1.69843 1.31903 1.14154 1.34590 0.86101 0.78171 0.79289 0.82561 1.19214 1.20682 1.20663 1.20518 0.79481 0.89081 0.83801 1.90502 1.56241 1.70711 1.31614 1.20934 0.96873 0.94123 0.98626 1.21331 1.00233 0.93357 0.98498 1.21158 0.92367 0.97062 1.01036 1.21543 0.95048 0.98079 0.96684 1.22967 1.03262 0.91430 1.04306 1.22970 1.01328 1.02135 0.94807 1.21155 0.98760 0.95435 0.96162 1.21291 0.94421 0.94969 1.02723 0.93075 0.93456 0.93134 0.92252 0.92451 0.93171 0.92471 0.87827 0.93263 0.92227 0.89807 0.91426 0.92450 0.92374 0.91748 0.89309 0.89216 0.89129 0.89198 0.91473 0.92294 0.92519 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.12 -2.04 5.93 -26.73 -0.16 -2.20 16 3 C -0.13 -2.64 5.50 -26.73 -0.15 -2.79 16 4 C 0.12 2.83 4.90 -4.04 -0.02 2.81 16 5 N -0.44 -11.09 2.50 -114.80 -0.29 -11.38 16 6 C -0.33 -8.22 8.03 -14.93 -0.12 -8.34 16 7 H 0.09 2.04 6.54 -52.49 -0.34 1.70 16 8 C 0.04 1.09 5.14 -17.47 -0.09 1.00 16 9 N -0.87 -22.79 11.28 55.50 0.63 -22.16 16 10 Si 0.91 19.26 29.56 -169.99 -5.03 14.24 16 11 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 14 C 0.48 11.77 6.66 -10.99 -0.07 11.70 16 15 O -0.60 -16.23 15.83 5.54 0.09 -16.14 16 16 C -0.08 -1.69 1.76 -91.83 -0.16 -1.85 16 17 C -0.10 -1.70 4.71 -26.67 -0.13 -1.82 16 18 C -0.08 -1.12 5.67 -26.56 -0.15 -1.27 16 19 C -0.11 -1.58 1.97 -154.54 -0.31 -1.88 16 20 C -0.18 -2.14 9.99 -26.82 -0.27 -2.40 16 21 C -0.18 -2.22 9.93 -26.80 -0.27 -2.49 16 22 C -0.08 -1.18 5.67 -26.56 -0.15 -1.33 16 23 C -0.10 -1.81 5.14 -26.67 -0.14 -1.94 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.10 2.65 5.62 -51.93 -0.29 2.36 16 32 H 0.05 1.26 7.51 -51.93 -0.39 0.87 16 33 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 34 H 0.08 1.67 6.52 -51.93 -0.34 1.33 16 35 H 0.07 1.28 7.96 -51.93 -0.41 0.86 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.06 0.83 8.09 -51.93 -0.42 0.40 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.08 1.69 7.63 -51.93 -0.40 1.30 16 LS Contribution 359.84 15.07 5.42 5.42 Total: -1.00 -27.83 359.84 -9.47 -37.30 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -8.49 Total: 7.28 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -1.80 Total: -14.56 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.34 Total: -33.54 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.09 Total: -16.14 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.83 -9.47 -37.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183882579.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.319 kcal (2) G-P(sol) polarization free energy of solvation -27.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds