Wall clock time and date at job start Tue Mar 31 2020 02:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47340 * 2 1 4 4 C 1.52998 * 109.47340 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.47319 * 179.32385 * 4 3 2 6 6 C 1.46902 * 110.99892 * 287.81831 * 5 4 3 7 7 C 1.50704 * 109.46922 * 298.42969 * 6 5 4 8 8 H 1.07995 * 119.99795 * 4.84017 * 7 6 5 9 9 C 1.37878 * 120.00018 * 184.84623 * 7 6 5 10 10 N 1.31518 * 119.99879 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00130 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46981 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47356 * 119.99459 * 11 9 7 14 14 H 1.48501 * 109.47123 * 239.99931 * 11 9 7 15 15 C 1.46899 * 111.00127 * 163.85958 * 5 4 3 16 16 C 1.52997 * 109.46898 * 190.00165 * 15 5 4 17 17 C 1.53005 * 109.47085 * 179.97438 * 16 15 5 18 18 C 1.50693 * 109.47440 * 179.97438 * 17 16 15 19 19 C 1.34522 * 125.78758 * 90.00303 * 18 17 16 20 20 C 1.41376 * 106.84139 * 180.02562 * 19 18 17 21 21 C 1.34519 * 106.84012 * 0.02562 * 20 19 18 22 22 C 1.50704 * 125.78763 * 179.74100 * 21 20 19 23 23 O 1.34297 * 108.42050 * 359.97438 * 21 20 19 24 24 H 1.09003 * 109.47187 * 300.00206 * 1 2 3 25 25 H 1.08999 * 109.47203 * 60.00022 * 1 2 3 26 26 H 1.09000 * 109.47092 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47187 * 239.99794 * 2 1 3 28 28 H 1.08999 * 109.47203 * 119.99978 * 2 1 3 29 29 H 1.08995 * 109.47233 * 59.99480 * 3 2 1 30 30 H 1.09007 * 109.46738 * 299.99869 * 3 2 1 31 31 H 1.09003 * 109.47190 * 59.32499 * 4 3 2 32 32 H 1.08999 * 109.47056 * 299.32529 * 4 3 2 33 33 H 1.08997 * 109.47337 * 58.42853 * 6 5 4 34 34 H 1.08995 * 109.46820 * 178.43385 * 6 5 4 35 35 H 0.96998 * 120.00128 * 180.02562 * 10 9 7 36 36 H 1.08995 * 109.46886 * 70.00106 * 15 5 4 37 37 H 1.08996 * 109.46761 * 310.00246 * 15 5 4 38 38 H 1.08995 * 109.47401 * 60.00256 * 16 15 5 39 39 H 1.08996 * 109.47480 * 299.99640 * 16 15 5 40 40 H 1.09009 * 109.46766 * 59.99934 * 17 16 15 41 41 H 1.08999 * 109.47140 * 300.00460 * 17 16 15 42 42 H 1.07995 * 126.57726 * 0.03701 * 19 18 17 43 43 H 1.08002 * 126.58381 * 180.02562 * 20 19 18 44 44 H 1.09004 * 109.47118 * 89.99302 * 22 21 20 45 45 H 1.09000 * 109.46901 * 209.99506 * 22 21 20 46 46 H 1.08997 * 109.46814 * 329.99776 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0597 2.8273 -0.0157 6 6 3.8401 3.4479 -1.3290 7 6 4.6063 2.6856 -2.3792 8 1 5.1337 1.7815 -2.1130 9 6 4.6342 3.1425 -3.6798 10 7 3.9917 4.2433 -4.0039 11 14 5.5834 2.1973 -4.9817 12 1 6.2134 1.0023 -4.3649 13 1 4.6542 1.7677 -6.0575 14 1 6.6375 3.0705 -5.5574 15 6 5.4771 2.8891 0.3654 16 6 5.8844 4.3482 0.5796 17 6 7.3605 4.4125 0.9772 18 6 7.7620 5.8497 1.1876 19 6 7.6915 6.5241 2.3494 20 6 8.1650 7.8314 2.0935 21 6 8.4959 7.8779 0.7905 22 6 9.0443 9.0783 0.0627 23 8 8.2499 6.6747 0.2470 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 1.9562 -0.8901 31 1 3.9337 0.9180 -0.8830 32 1 3.9329 0.9392 0.8968 33 1 2.7768 3.4264 -1.5678 34 1 4.1864 4.4811 -1.3050 35 1 4.0110 4.5646 -4.9189 36 1 6.0857 2.4546 -0.4275 37 1 5.6297 2.3299 1.2885 38 1 5.2758 4.7827 1.3726 39 1 5.7318 4.9073 -0.3434 40 1 7.9695 3.9778 0.1845 41 1 7.5128 3.8534 1.9004 42 1 7.3408 6.1404 3.2961 43 1 8.2456 8.6380 2.8071 44 1 10.1328 9.0717 0.1197 45 1 8.7348 9.0425 -0.9818 46 1 8.6619 9.9887 0.5241 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207947552.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:09 Heat of formation + Delta-G solvation = -15.997501 kcal Electronic energy + Delta-G solvation = -21814.069210 eV Core-core repulsion = 18704.278781 eV Total energy + Delta-G solvation = -3109.790429 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.36991 -37.48105 -34.82822 -33.62098 -32.97696 -32.32200 -31.03023 -28.58371 -27.44658 -25.90598 -23.85258 -23.32418 -21.74593 -21.39377 -20.26421 -19.86295 -19.39134 -16.39919 -16.28671 -15.93648 -15.23456 -14.96899 -14.56363 -14.42694 -13.96028 -13.64622 -13.47365 -13.11850 -13.03168 -12.66040 -12.60127 -12.46072 -12.18817 -12.08992 -11.81627 -11.56146 -11.36274 -11.19311 -11.01283 -10.75425 -10.64993 -10.53718 -10.41579 -10.05793 -9.98734 -9.89017 -9.74654 -9.66346 -9.43137 -8.38599 -8.03543 -7.10812 -5.99841 -4.08040 1.91824 2.78720 3.11451 3.26914 3.35315 3.37847 4.42141 4.75275 4.93588 5.09364 5.19749 5.28648 5.30487 5.38687 5.41760 5.48487 5.53215 5.56130 5.65433 5.75298 5.84420 5.93079 5.95197 6.02546 6.11590 6.15085 6.18109 6.25508 6.27511 6.36615 6.40016 6.45649 6.53844 6.57308 6.74079 6.89644 6.91627 6.94419 7.01394 7.34348 7.41743 7.59002 7.94554 8.12709 8.32989 8.37817 9.02362 9.57906 11.05012 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012731 B = 0.004464 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.859531 B = 6271.163690 C = 7882.875873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.110 4.110 4 C 0.060 3.940 5 N -0.544 5.544 6 C 0.183 3.817 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.065 3.935 10 N -0.890 5.890 11 Si 0.884 3.116 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.065 3.935 16 C -0.107 4.107 17 C -0.040 4.040 18 C 0.009 3.991 19 C -0.220 4.220 20 C -0.213 4.213 21 C -0.026 4.026 22 C -0.072 4.072 23 O -0.171 6.171 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.028 0.972 34 H 0.036 0.964 35 H 0.261 0.739 36 H 0.044 0.956 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.876 1.980 11.080 12.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.148 4.148 4 C -0.068 4.068 5 N -0.268 5.268 6 C 0.057 3.943 7 C -0.583 4.583 8 H 0.074 0.926 9 C -0.137 4.137 10 N -0.529 5.529 11 Si 0.712 3.288 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.063 4.063 16 C -0.145 4.145 17 C -0.078 4.078 18 C -0.042 4.042 19 C -0.239 4.239 20 C -0.232 4.232 21 C -0.076 4.076 22 C -0.128 4.128 23 O -0.067 6.067 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.163 0.837 43 H 0.161 0.839 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.608 2.297 10.976 12.123 hybrid contribution 0.937 -0.812 -1.281 1.782 sum 5.545 1.485 9.695 11.267 Atomic orbital electron populations 1.21752 0.96454 1.00740 1.01717 1.21484 0.95293 0.97899 1.01337 1.21511 0.95802 0.95192 1.02277 1.21930 0.94699 0.90717 0.99470 1.62494 1.15671 1.16298 1.32321 1.19813 0.96788 0.95087 0.82579 1.21736 1.32133 1.10062 0.94342 0.92565 1.24934 0.95409 0.94865 0.98500 1.69952 1.42368 1.21697 1.18865 0.86662 0.79955 0.80093 0.82055 1.19895 1.20985 1.20995 1.21839 0.90780 0.95148 0.98575 1.21535 0.92065 0.98285 1.02624 1.20200 0.98260 0.86216 1.03110 1.22589 1.00728 0.94003 0.86841 1.21494 1.08759 0.94514 0.99096 1.21489 1.07399 0.98576 0.95746 1.22379 1.05352 0.86575 0.93314 1.20257 1.00724 0.91253 1.00592 1.84006 1.63989 1.20049 1.38689 0.93073 0.92722 0.93465 0.92240 0.92798 0.92486 0.91373 0.93642 0.93584 0.95368 0.94626 0.92952 0.93823 0.93286 0.91811 0.90478 0.90154 0.89327 0.83744 0.83941 0.90491 0.90515 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.79 5.93 -26.74 -0.16 -1.94 16 3 C -0.11 -1.93 5.28 -26.74 -0.14 -2.07 16 4 C 0.06 1.16 4.81 -3.82 -0.02 1.14 16 5 N -0.54 -11.53 4.67 -236.07 -1.10 -12.63 16 6 C 0.18 4.65 4.77 -4.97 -0.02 4.63 16 7 C -0.54 -14.73 7.33 -34.44 -0.25 -14.99 16 8 H 0.06 1.52 5.96 -52.49 -0.31 1.21 16 9 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 10 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 11 Si 0.88 21.50 29.54 -169.99 -5.02 16.48 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 C 0.07 1.23 4.77 -3.83 -0.02 1.22 16 16 C -0.11 -1.92 5.12 -26.73 -0.14 -2.06 16 17 C -0.04 -0.61 5.75 -27.88 -0.16 -0.77 16 18 C 0.01 0.14 6.58 -35.63 -0.23 -0.09 16 19 C -0.22 -3.17 10.81 -39.70 -0.43 -3.60 16 20 C -0.21 -2.89 10.81 -39.70 -0.43 -3.32 16 21 C -0.03 -0.37 7.32 -35.62 -0.26 -0.63 16 22 C -0.07 -0.72 10.42 36.01 0.38 -0.35 16 23 O -0.17 -2.95 10.65 5.73 0.06 -2.89 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.37 6.72 -51.93 -0.35 1.02 16 31 H 0.05 0.97 6.19 -51.93 -0.32 0.65 16 32 H 0.05 0.79 7.81 -51.93 -0.41 0.38 16 33 H 0.03 0.77 6.64 -51.93 -0.35 0.43 16 34 H 0.04 0.98 6.36 -51.93 -0.33 0.65 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.04 0.91 6.55 -51.93 -0.34 0.57 16 37 H 0.05 0.81 7.86 -51.93 -0.41 0.40 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.08 1.66 6.50 -51.93 -0.34 1.32 16 40 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 41 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -30.14 367.24 -9.61 -39.75 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -8.20 Total: 1.89 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -1.62 Total: -22.66 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: -0.37 Total: -38.11 kcal Atomic # 8 Polarization: -2.95 SS G_CDS: 0.06 Total: -2.89 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.14 -9.61 -39.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207947552.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.755 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds