Wall clock time and date at job start Tue Mar 31 2020 02:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47340 * 2 1 4 4 C 1.52998 * 109.47340 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.47319 * 179.32385 * 4 3 2 6 6 C 1.46902 * 110.99892 * 287.81831 * 5 4 3 7 7 C 1.50704 * 109.46922 * 298.42969 * 6 5 4 8 8 H 1.07995 * 119.99795 * 4.84017 * 7 6 5 9 9 C 1.37878 * 120.00018 * 184.84623 * 7 6 5 10 10 N 1.31518 * 119.99879 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00130 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46981 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47356 * 119.99459 * 11 9 7 14 14 H 1.48501 * 109.47123 * 239.99931 * 11 9 7 15 15 C 1.46899 * 111.00127 * 163.85958 * 5 4 3 16 16 C 1.52997 * 109.46898 * 190.00165 * 15 5 4 17 17 C 1.53005 * 109.47085 * 179.97438 * 16 15 5 18 18 C 1.50693 * 109.47440 * 179.97438 * 17 16 15 19 19 C 1.34522 * 125.78758 * 90.00303 * 18 17 16 20 20 C 1.41376 * 106.84139 * 180.02562 * 19 18 17 21 21 C 1.34519 * 106.84012 * 0.02562 * 20 19 18 22 22 C 1.50704 * 125.78763 * 179.74100 * 21 20 19 23 23 O 1.34297 * 108.42050 * 359.97438 * 21 20 19 24 24 H 1.09003 * 109.47187 * 300.00206 * 1 2 3 25 25 H 1.08999 * 109.47203 * 60.00022 * 1 2 3 26 26 H 1.09000 * 109.47092 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47187 * 239.99794 * 2 1 3 28 28 H 1.08999 * 109.47203 * 119.99978 * 2 1 3 29 29 H 1.08995 * 109.47233 * 59.99480 * 3 2 1 30 30 H 1.09007 * 109.46738 * 299.99869 * 3 2 1 31 31 H 1.09003 * 109.47190 * 59.32499 * 4 3 2 32 32 H 1.08999 * 109.47056 * 299.32529 * 4 3 2 33 33 H 1.08997 * 109.47337 * 58.42853 * 6 5 4 34 34 H 1.08995 * 109.46820 * 178.43385 * 6 5 4 35 35 H 0.96998 * 120.00128 * 180.02562 * 10 9 7 36 36 H 1.08995 * 109.46886 * 70.00106 * 15 5 4 37 37 H 1.08996 * 109.46761 * 310.00246 * 15 5 4 38 38 H 1.08995 * 109.47401 * 60.00256 * 16 15 5 39 39 H 1.08996 * 109.47480 * 299.99640 * 16 15 5 40 40 H 1.09009 * 109.46766 * 59.99934 * 17 16 15 41 41 H 1.08999 * 109.47140 * 300.00460 * 17 16 15 42 42 H 1.07995 * 126.57726 * 0.03701 * 19 18 17 43 43 H 1.08002 * 126.58381 * 180.02562 * 20 19 18 44 44 H 1.09004 * 109.47118 * 89.99302 * 22 21 20 45 45 H 1.09000 * 109.46901 * 209.99506 * 22 21 20 46 46 H 1.08997 * 109.46814 * 329.99776 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0597 2.8273 -0.0157 6 6 3.8401 3.4479 -1.3290 7 6 4.6063 2.6856 -2.3792 8 1 5.1337 1.7815 -2.1130 9 6 4.6342 3.1425 -3.6798 10 7 3.9917 4.2433 -4.0039 11 14 5.5834 2.1973 -4.9817 12 1 6.2134 1.0023 -4.3649 13 1 4.6542 1.7677 -6.0575 14 1 6.6375 3.0705 -5.5574 15 6 5.4771 2.8891 0.3654 16 6 5.8844 4.3482 0.5796 17 6 7.3605 4.4125 0.9772 18 6 7.7620 5.8497 1.1876 19 6 7.6915 6.5241 2.3494 20 6 8.1650 7.8314 2.0935 21 6 8.4959 7.8779 0.7905 22 6 9.0443 9.0783 0.0627 23 8 8.2499 6.6747 0.2470 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 1.9562 -0.8901 31 1 3.9337 0.9180 -0.8830 32 1 3.9329 0.9392 0.8968 33 1 2.7768 3.4264 -1.5678 34 1 4.1864 4.4811 -1.3050 35 1 4.0110 4.5646 -4.9189 36 1 6.0857 2.4546 -0.4275 37 1 5.6297 2.3299 1.2885 38 1 5.2758 4.7827 1.3726 39 1 5.7318 4.9073 -0.3434 40 1 7.9695 3.9778 0.1845 41 1 7.5128 3.8534 1.9004 42 1 7.3408 6.1404 3.2961 43 1 8.2456 8.6380 2.8071 44 1 10.1328 9.0717 0.1197 45 1 8.7348 9.0425 -0.9818 46 1 8.6619 9.9887 0.5241 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207947552.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:08 Heat of formation + Delta-G solvation = -32.398701 kcal Electronic energy + Delta-G solvation = -21814.780419 eV Core-core repulsion = 18704.278781 eV Total energy + Delta-G solvation = -3110.501639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.50237 -39.16725 -36.14014 -35.16585 -34.22710 -34.04843 -32.16102 -29.95387 -29.19340 -27.36360 -25.46595 -24.85304 -22.99079 -22.57030 -21.62684 -21.19997 -20.99728 -18.44797 -17.51886 -17.13551 -16.91292 -16.50291 -16.26911 -15.79437 -15.28675 -15.14022 -14.85058 -14.32461 -14.07952 -13.88563 -13.80851 -13.68893 -13.53729 -13.46352 -13.12451 -12.96171 -12.86915 -12.78591 -12.62190 -12.40722 -12.26774 -12.02930 -11.87419 -11.80581 -11.67167 -11.46083 -11.28684 -11.24223 -10.77330 -10.57174 -9.14590 -8.95856 -8.13755 -6.32312 0.78731 1.32551 1.33960 1.44874 1.70654 2.07021 2.35716 3.10586 3.34706 3.76408 3.99130 4.11862 4.16127 4.17424 4.24605 4.32360 4.36993 4.48733 4.52475 4.60142 4.69034 4.70136 4.77753 4.84129 4.84619 4.87022 4.92807 4.98721 5.01688 5.09212 5.13706 5.17922 5.28242 5.32727 5.33277 5.39226 5.39915 5.45135 5.51834 5.57428 5.71750 5.79254 6.09269 6.29714 6.31029 6.64161 6.89773 7.37981 8.88145 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012731 B = 0.004464 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.859531 B = 6271.163690 C = 7882.875873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.104 4.104 4 C 0.060 3.940 5 N -0.545 5.545 6 C 0.202 3.798 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.010 3.990 10 N -0.928 5.928 11 Si 0.951 3.049 12 H -0.265 1.265 13 H -0.278 1.278 14 H -0.281 1.281 15 C 0.066 3.934 16 C -0.095 4.095 17 C -0.030 4.030 18 C -0.027 4.027 19 C -0.214 4.214 20 C -0.220 4.220 21 C -0.042 4.042 22 C -0.072 4.072 23 O -0.205 6.205 24 H 0.060 0.940 25 H 0.041 0.959 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.031 0.969 31 H 0.021 0.979 32 H 0.078 0.922 33 H 0.001 0.999 34 H 0.005 0.995 35 H 0.263 0.737 36 H 0.022 0.978 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.028 0.972 40 H 0.070 0.930 41 H 0.123 0.877 42 H 0.168 0.832 43 H 0.172 0.828 44 H 0.096 0.904 45 H 0.069 0.931 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.741 1.037 13.031 14.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.142 4.142 4 C -0.068 4.068 5 N -0.268 5.268 6 C 0.075 3.925 7 C -0.584 4.584 8 H 0.075 0.925 9 C -0.189 4.189 10 N -0.568 5.568 11 Si 0.776 3.224 12 H -0.189 1.189 13 H -0.204 1.204 14 H -0.207 1.207 15 C -0.062 4.062 16 C -0.133 4.133 17 C -0.068 4.068 18 C -0.077 4.077 19 C -0.233 4.233 20 C -0.238 4.238 21 C -0.091 4.091 22 C -0.128 4.128 23 O -0.103 6.103 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.039 0.961 32 H 0.097 0.903 33 H 0.019 0.981 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.089 0.911 41 H 0.141 0.859 42 H 0.185 0.815 43 H 0.190 0.810 44 H 0.114 0.886 45 H 0.088 0.912 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.475 1.339 12.944 14.118 hybrid contribution 0.662 -0.459 -1.814 1.985 sum 6.137 0.880 11.131 12.741 Atomic orbital electron populations 1.21736 0.95048 1.02082 1.01591 1.21448 0.96536 0.95564 1.01940 1.21459 0.94722 0.97194 1.00855 1.22029 0.95743 0.89227 0.99768 1.62458 1.17401 1.17581 1.29377 1.19382 0.94622 0.93803 0.84700 1.21970 1.31677 1.09883 0.94890 0.92513 1.25777 0.96454 0.95781 1.00862 1.70081 1.43960 1.23338 1.19428 0.85617 0.78585 0.78920 0.79277 1.18896 1.20351 1.20721 1.21937 0.88824 0.96064 0.99374 1.21367 0.94568 0.96974 1.00381 1.20128 0.95592 0.86710 1.04334 1.22824 1.02789 0.94538 0.87506 1.21880 1.07341 0.94735 0.99310 1.21906 1.06822 0.99089 0.96020 1.23273 1.04976 0.86548 0.94330 1.20458 1.01895 0.90480 0.99971 1.83982 1.64849 1.21447 1.40057 0.92113 0.94011 0.91373 0.93189 0.90558 0.91664 0.94974 0.96090 0.90346 0.98101 0.97688 0.92849 0.96010 0.89432 0.91306 0.95313 0.91108 0.85873 0.81472 0.81012 0.88581 0.91224 0.87187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.91 71.98 0.71 -2.83 16 2 C -0.12 -3.24 5.93 30.59 0.18 -3.06 16 3 C -0.10 -3.65 5.28 30.59 0.16 -3.49 16 4 C 0.06 2.29 4.81 86.30 0.41 2.70 16 5 N -0.55 -23.42 4.67 -900.80 -4.20 -27.62 16 6 C 0.20 10.80 4.77 85.56 0.41 11.21 16 7 C -0.55 -30.58 7.33 25.60 0.19 -30.40 16 8 H 0.06 3.13 5.96 -2.91 -0.02 3.11 16 9 C 0.01 0.58 5.46 84.65 0.46 1.05 16 10 N -0.93 -56.78 13.29 21.45 0.28 -56.49 16 11 Si 0.95 44.98 29.54 68.60 2.03 47.00 16 12 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 14 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 15 C 0.07 2.48 4.77 86.30 0.41 2.90 16 16 C -0.09 -3.48 5.12 30.59 0.16 -3.32 16 17 C -0.03 -0.90 5.75 29.85 0.17 -0.73 16 18 C -0.03 -0.87 6.58 24.83 0.16 -0.71 16 19 C -0.21 -5.85 10.81 22.19 0.24 -5.61 16 20 C -0.22 -5.58 10.81 22.19 0.24 -5.34 16 21 C -0.04 -1.18 7.32 24.84 0.18 -0.99 16 22 C -0.07 -1.36 10.42 71.24 0.74 -0.61 16 23 O -0.21 -7.27 10.65 -2.40 -0.03 -7.30 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.03 1.34 6.72 -2.38 -0.02 1.32 16 31 H 0.02 0.90 6.19 -2.39 -0.01 0.88 16 32 H 0.08 2.48 7.81 -2.39 -0.02 2.46 16 33 H 0.00 0.05 6.64 -2.39 -0.02 0.04 16 34 H 0.01 0.30 6.36 -2.39 -0.02 0.28 16 35 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.02 0.92 6.55 -2.39 -0.02 0.90 16 37 H 0.09 2.64 7.86 -2.39 -0.02 2.62 16 38 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.03 1.31 6.50 -2.39 -0.02 1.29 16 40 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 41 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 42 H 0.17 3.65 8.06 -2.91 -0.02 3.62 16 43 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 44 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -68.52 367.24 3.84 -64.68 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.92 Total: 18.96 kcal Atomic # 6 Polarization: -44.07 SS G_CDS: 4.84 Total: -39.24 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -3.92 Total: -84.11 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.03 Total: -7.30 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -68.52 3.84 -64.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207947552.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.284 kcal (2) G-P(sol) polarization free energy of solvation -68.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds