Wall clock time and date at job start Tue Mar 31 2020 02:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47670 * 2 1 4 4 N 1.46896 * 109.47823 * 179.53934 * 3 2 1 5 5 C 1.46900 * 110.99948 * 288.00813 * 4 3 2 6 6 C 1.50702 * 109.47546 * 160.35791 * 5 4 3 7 7 H 1.08002 * 119.99691 * 4.65175 * 6 5 4 8 8 C 1.37871 * 120.00157 * 184.66008 * 6 5 4 9 9 N 1.31512 * 120.00166 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00053 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47274 * 59.99543 * 10 8 6 12 12 H 1.48497 * 109.47471 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47059 * 299.99830 * 10 8 6 14 14 C 1.46898 * 111.00263 * 164.05102 * 4 3 2 15 15 C 1.52999 * 109.47061 * 293.95073 * 14 4 3 16 16 C 1.53002 * 109.47011 * 179.97438 * 15 14 4 17 17 H 1.09001 * 109.47365 * 305.00349 * 16 15 14 18 18 C 1.53001 * 109.46878 * 65.00531 * 16 15 14 19 19 C 1.50701 * 109.47154 * 185.00189 * 16 15 14 20 20 C 1.34512 * 125.79010 * 120.00062 * 19 16 15 21 21 C 1.41375 * 106.84308 * 180.02562 * 20 19 16 22 22 C 1.34516 * 106.83990 * 359.97438 * 21 20 19 23 23 C 1.50706 * 125.78972 * 180.02562 * 22 21 20 24 24 O 1.34298 * 125.79002 * 299.69988 * 19 16 15 25 25 H 1.08997 * 109.47228 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46612 * 299.99851 * 1 2 3 27 27 H 1.09000 * 109.47139 * 59.99925 * 1 2 3 28 28 H 1.09004 * 109.47521 * 240.00193 * 2 1 3 29 29 H 1.09000 * 109.47139 * 120.00075 * 2 1 3 30 30 H 1.09004 * 109.46890 * 59.53348 * 3 2 1 31 31 H 1.09004 * 109.46932 * 299.54233 * 3 2 1 32 32 H 1.09004 * 109.47193 * 280.35536 * 5 4 3 33 33 H 1.08996 * 109.47337 * 40.35278 * 5 4 3 34 34 H 0.97004 * 120.00377 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.46884 * 53.95620 * 14 4 3 36 36 H 1.09005 * 109.47089 * 173.95287 * 14 4 3 37 37 H 1.08991 * 109.47779 * 300.00311 * 15 14 4 38 38 H 1.09005 * 109.46994 * 60.00156 * 15 14 4 39 39 H 1.09001 * 109.47270 * 59.99761 * 18 16 15 40 40 H 1.08997 * 109.46974 * 179.97438 * 18 16 15 41 41 H 1.08995 * 109.47118 * 300.00047 * 18 16 15 42 42 H 1.08000 * 126.57797 * 359.97131 * 20 19 16 43 43 H 1.07999 * 126.58175 * 180.02562 * 21 20 19 44 44 H 1.08993 * 109.46842 * 90.00096 * 23 22 21 45 45 H 1.08997 * 109.46800 * 210.00287 * 23 22 21 46 46 H 1.09007 * 109.46888 * 330.00425 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5090 1.4425 0.0111 5 6 4.0255 1.0220 1.3205 6 6 5.4560 0.5707 1.1749 7 1 5.9575 0.6641 0.2229 8 6 6.1244 0.0384 2.2569 9 7 5.5139 -0.0750 3.4162 10 14 7.8973 -0.5217 2.0763 11 1 8.7405 0.6292 1.6643 12 1 8.3840 -1.0513 3.3755 13 1 7.9770 -1.5877 1.0456 14 6 4.0383 2.7601 -0.3652 15 6 3.6855 3.0535 -1.8248 16 6 4.2362 4.4261 -2.2166 17 1 3.8660 5.1785 -1.5202 18 6 5.7651 4.3949 -2.1683 19 6 3.7847 4.7687 -3.6130 20 6 3.0403 5.8340 -3.9599 21 6 2.8532 5.7646 -5.3595 22 6 3.4949 4.6614 -5.7843 23 6 3.5703 4.1796 -7.2103 24 8 4.0620 4.0652 -4.7228 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6699 1.9587 0.8858 31 1 1.6835 1.9539 -0.8941 32 1 3.9780 1.8600 2.0160 33 1 3.4218 0.1986 1.7019 34 1 5.9843 -0.4491 4.1776 35 1 3.5991 3.5246 0.2756 36 1 5.1218 2.7641 -0.2455 37 1 4.1246 2.2890 -2.4656 38 1 2.6020 3.0495 -1.9445 39 1 6.1354 3.6425 -2.8647 40 1 6.1575 5.3726 -2.4478 41 1 6.0917 4.1471 -1.1583 42 1 2.6581 6.5956 -3.2964 43 1 2.3016 6.4637 -5.9706 44 1 4.4437 4.6154 -7.6952 45 1 3.6521 3.0928 -7.2227 46 1 2.6694 4.4824 -7.7441 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208158329.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:28 Heat of formation + Delta-G solvation = -10.723289 kcal Electronic energy + Delta-G solvation = -22034.216350 eV Core-core repulsion = 18924.654628 eV Total energy + Delta-G solvation = -3109.561722 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.57082 -37.65965 -35.43108 -33.14541 -33.02410 -32.22698 -31.28611 -28.52428 -26.93908 -26.52166 -24.81082 -23.09074 -21.78163 -21.59865 -20.76747 -19.72727 -19.43410 -16.61329 -16.24532 -16.13478 -15.22225 -14.82881 -14.52530 -14.37240 -13.91985 -13.79027 -13.57323 -13.24904 -13.12072 -12.93014 -12.77464 -12.54382 -12.34735 -12.07031 -11.84688 -11.77563 -11.47084 -11.33917 -11.15942 -10.86411 -10.75888 -10.62377 -10.51753 -10.39743 -10.12488 -9.99453 -9.84130 -9.48088 -9.16737 -8.37574 -8.21142 -7.18094 -5.98133 -3.98929 1.75570 2.62604 2.93775 3.35876 3.39884 3.43133 4.45114 4.55299 4.76258 4.91863 5.03623 5.06538 5.23649 5.27120 5.31865 5.37312 5.45456 5.50974 5.56669 5.59946 5.73813 5.79858 5.81658 5.90910 5.92960 6.02992 6.06811 6.10171 6.13690 6.24117 6.29173 6.34891 6.38186 6.41743 6.56121 6.66745 6.73252 6.79421 6.89889 7.24579 7.31610 7.39786 7.87127 8.18452 8.29078 8.60922 9.08690 9.64887 11.12453 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014845 B = 0.004186 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.719044 B = 6687.586150 C = 7860.831377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.054 3.946 4 N -0.536 5.536 5 C 0.191 3.809 6 C -0.502 4.502 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.901 5.901 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.064 3.936 15 C -0.111 4.111 16 C -0.011 4.011 17 H 0.096 0.904 18 C -0.149 4.149 19 C 0.013 3.987 20 C -0.220 4.220 21 C -0.212 4.212 22 C -0.026 4.026 23 C -0.072 4.072 24 O -0.168 6.168 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.020 0.980 31 H 0.059 0.941 32 H -0.013 1.013 33 H 0.036 0.964 34 H 0.261 0.739 35 H 0.018 0.982 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.144 0.856 43 H 0.143 0.857 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.366 9.914 -15.703 19.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.075 4.075 4 N -0.261 5.261 5 C 0.066 3.934 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.541 5.541 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.064 4.064 15 C -0.148 4.148 16 C -0.030 4.030 17 H 0.115 0.885 18 C -0.207 4.207 19 C -0.038 4.038 20 C -0.240 4.240 21 C -0.231 4.231 22 C -0.076 4.076 23 C -0.128 4.128 24 O -0.065 6.065 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.005 0.995 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.036 0.964 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.162 0.838 43 H 0.161 0.839 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.996 9.236 -15.864 19.312 hybrid contribution 0.471 0.525 0.666 0.970 sum -5.525 9.761 -15.198 18.889 Atomic orbital electron populations 1.21741 0.96828 1.00982 1.01005 1.21502 0.93859 0.97336 1.03048 1.22096 0.90044 0.96332 0.98984 1.62102 1.04862 1.25183 1.33908 1.19771 0.95712 0.94930 0.82940 1.21144 0.96637 1.40117 0.96220 0.91997 1.24975 0.98294 0.96087 0.95263 1.69947 1.37084 1.46052 1.00979 0.86599 0.84844 0.79083 0.77101 1.20315 1.21439 1.20206 1.22004 1.01457 0.90067 0.92866 1.21722 1.00446 0.94486 0.98183 1.19868 0.97021 0.99511 0.86554 0.88541 1.21903 0.93457 1.01749 1.03547 1.22573 1.00584 0.92678 0.87935 1.21534 1.05626 1.01108 0.95692 1.21497 1.06354 0.99953 0.95332 1.22392 1.00331 0.95316 0.89581 1.20258 1.03326 1.02433 0.86788 1.83973 1.60118 1.47534 1.14826 0.93109 0.93233 0.93383 0.91721 0.91303 0.96218 0.92282 0.99539 0.94617 0.92961 0.96431 0.89697 0.90778 0.92189 0.92045 0.92883 0.90633 0.83779 0.83907 0.90394 0.90583 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 37.15 0.37 -1.70 16 2 C -0.12 -2.10 6.01 -26.73 -0.16 -2.26 16 3 C 0.05 1.00 4.83 -3.83 -0.02 0.98 16 4 N -0.54 -11.56 4.38 -236.07 -1.03 -12.59 16 5 C 0.19 4.98 4.59 -4.98 -0.02 4.96 16 6 C -0.50 -14.11 8.61 -34.44 -0.30 -14.41 16 7 H 0.06 1.72 7.66 -52.49 -0.40 1.32 16 8 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 10 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.06 1.21 4.54 -3.83 -0.02 1.19 16 15 C -0.11 -1.74 4.63 -26.73 -0.12 -1.87 16 16 C -0.01 -0.14 2.79 -91.77 -0.26 -0.40 16 17 H 0.10 1.18 8.10 -51.93 -0.42 0.76 16 18 C -0.15 -1.99 8.93 37.16 0.33 -1.66 16 19 C 0.01 0.18 5.83 -35.62 -0.21 -0.03 16 20 C -0.22 -2.79 10.78 -39.71 -0.43 -3.22 16 21 C -0.21 -2.48 10.81 -39.70 -0.43 -2.91 16 22 C -0.03 -0.32 7.32 -35.62 -0.26 -0.58 16 23 C -0.07 -0.57 10.42 36.01 0.38 -0.19 16 24 O -0.17 -2.45 10.65 5.73 0.06 -2.39 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.07 1.37 6.53 -51.93 -0.34 1.03 16 30 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 31 H 0.06 0.99 5.94 -51.93 -0.31 0.68 16 32 H -0.01 -0.37 8.00 -51.93 -0.42 -0.78 16 33 H 0.04 0.99 6.24 -51.93 -0.32 0.67 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.02 0.32 8.12 -51.93 -0.42 -0.10 16 36 H 0.08 1.72 5.75 -51.93 -0.30 1.42 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.06 0.93 6.28 -51.93 -0.33 0.60 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 1.05 6.56 -51.93 -0.34 0.71 16 42 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 43 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 367.70 15.07 5.54 5.54 Total: -1.00 -30.70 367.70 -9.18 -39.89 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -8.22 Total: -0.44 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -1.24 Total: -20.64 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: -0.30 Total: -38.69 kcal Atomic # 8 Polarization: -2.45 SS G_CDS: 0.06 Total: -2.39 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.70 -9.18 -39.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208158329.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.164 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds