Wall clock time and date at job start Tue Mar 31 2020 02:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47670 * 2 1 4 4 N 1.46896 * 109.47823 * 179.53934 * 3 2 1 5 5 C 1.46900 * 110.99948 * 288.00813 * 4 3 2 6 6 C 1.50702 * 109.47546 * 160.35791 * 5 4 3 7 7 H 1.08002 * 119.99691 * 4.65175 * 6 5 4 8 8 C 1.37871 * 120.00157 * 184.66008 * 6 5 4 9 9 N 1.31512 * 120.00166 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00053 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47274 * 59.99543 * 10 8 6 12 12 H 1.48497 * 109.47471 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47059 * 299.99830 * 10 8 6 14 14 C 1.46898 * 111.00263 * 164.05102 * 4 3 2 15 15 C 1.52999 * 109.47061 * 293.95073 * 14 4 3 16 16 C 1.53002 * 109.47011 * 179.97438 * 15 14 4 17 17 H 1.09001 * 109.47365 * 305.00349 * 16 15 14 18 18 C 1.53001 * 109.46878 * 65.00531 * 16 15 14 19 19 C 1.50701 * 109.47154 * 185.00189 * 16 15 14 20 20 C 1.34512 * 125.79010 * 120.00062 * 19 16 15 21 21 C 1.41375 * 106.84308 * 180.02562 * 20 19 16 22 22 C 1.34516 * 106.83990 * 359.97438 * 21 20 19 23 23 C 1.50706 * 125.78972 * 180.02562 * 22 21 20 24 24 O 1.34298 * 125.79002 * 299.69988 * 19 16 15 25 25 H 1.08997 * 109.47228 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46612 * 299.99851 * 1 2 3 27 27 H 1.09000 * 109.47139 * 59.99925 * 1 2 3 28 28 H 1.09004 * 109.47521 * 240.00193 * 2 1 3 29 29 H 1.09000 * 109.47139 * 120.00075 * 2 1 3 30 30 H 1.09004 * 109.46890 * 59.53348 * 3 2 1 31 31 H 1.09004 * 109.46932 * 299.54233 * 3 2 1 32 32 H 1.09004 * 109.47193 * 280.35536 * 5 4 3 33 33 H 1.08996 * 109.47337 * 40.35278 * 5 4 3 34 34 H 0.97004 * 120.00377 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.46884 * 53.95620 * 14 4 3 36 36 H 1.09005 * 109.47089 * 173.95287 * 14 4 3 37 37 H 1.08991 * 109.47779 * 300.00311 * 15 14 4 38 38 H 1.09005 * 109.46994 * 60.00156 * 15 14 4 39 39 H 1.09001 * 109.47270 * 59.99761 * 18 16 15 40 40 H 1.08997 * 109.46974 * 179.97438 * 18 16 15 41 41 H 1.08995 * 109.47118 * 300.00047 * 18 16 15 42 42 H 1.08000 * 126.57797 * 359.97131 * 20 19 16 43 43 H 1.07999 * 126.58175 * 180.02562 * 21 20 19 44 44 H 1.08993 * 109.46842 * 90.00096 * 23 22 21 45 45 H 1.08997 * 109.46800 * 210.00287 * 23 22 21 46 46 H 1.09007 * 109.46888 * 330.00425 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5090 1.4425 0.0111 5 6 4.0255 1.0220 1.3205 6 6 5.4560 0.5707 1.1749 7 1 5.9575 0.6641 0.2229 8 6 6.1244 0.0384 2.2569 9 7 5.5139 -0.0750 3.4162 10 14 7.8973 -0.5217 2.0763 11 1 8.7405 0.6292 1.6643 12 1 8.3840 -1.0513 3.3755 13 1 7.9770 -1.5877 1.0456 14 6 4.0383 2.7601 -0.3652 15 6 3.6855 3.0535 -1.8248 16 6 4.2362 4.4261 -2.2166 17 1 3.8660 5.1785 -1.5202 18 6 5.7651 4.3949 -2.1683 19 6 3.7847 4.7687 -3.6130 20 6 3.0403 5.8340 -3.9599 21 6 2.8532 5.7646 -5.3595 22 6 3.4949 4.6614 -5.7843 23 6 3.5703 4.1796 -7.2103 24 8 4.0620 4.0652 -4.7228 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6699 1.9587 0.8858 31 1 1.6835 1.9539 -0.8941 32 1 3.9780 1.8600 2.0160 33 1 3.4218 0.1986 1.7019 34 1 5.9843 -0.4491 4.1776 35 1 3.5991 3.5246 0.2756 36 1 5.1218 2.7641 -0.2455 37 1 4.1246 2.2890 -2.4656 38 1 2.6020 3.0495 -1.9445 39 1 6.1354 3.6425 -2.8647 40 1 6.1575 5.3726 -2.4478 41 1 6.0917 4.1471 -1.1583 42 1 2.6581 6.5956 -3.2964 43 1 2.3016 6.4637 -5.9706 44 1 4.4437 4.6154 -7.6952 45 1 3.6521 3.0928 -7.2227 46 1 2.6694 4.4824 -7.7441 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208158329.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:27 Heat of formation + Delta-G solvation = -27.237176 kcal Electronic energy + Delta-G solvation = -22034.932446 eV Core-core repulsion = 18924.654628 eV Total energy + Delta-G solvation = -3110.277818 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.51928 -39.24002 -36.70896 -34.93918 -34.05637 -33.78904 -32.25019 -30.11091 -28.62934 -27.45936 -26.29143 -24.74128 -23.13817 -22.67968 -22.01721 -21.13556 -20.65016 -18.58758 -17.47607 -17.11421 -16.83547 -16.26749 -16.16176 -15.78758 -15.28626 -15.06242 -14.95595 -14.26931 -14.16364 -13.91415 -13.85286 -13.70040 -13.67357 -13.46015 -13.32109 -13.07450 -12.82375 -12.66008 -12.58426 -12.55148 -12.42065 -12.10366 -11.91919 -11.90387 -11.67218 -11.60752 -11.27190 -11.05850 -10.77001 -10.56347 -9.14456 -8.97443 -8.17529 -6.27183 0.81041 1.40886 1.43921 1.51784 1.71432 2.05285 2.41431 3.12512 3.25572 3.63629 3.87034 4.01194 4.10318 4.13913 4.17445 4.23673 4.37895 4.42244 4.49412 4.56403 4.60503 4.68677 4.72909 4.74939 4.77873 4.86457 4.89177 4.95883 4.96393 5.03629 5.08714 5.13322 5.15149 5.18055 5.27760 5.33638 5.35433 5.39914 5.42855 5.48537 5.69289 5.70437 6.11653 6.30996 6.44784 6.68417 6.88338 7.42041 8.92801 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014845 B = 0.004186 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.719044 B = 6687.586150 C = 7860.831377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.117 4.117 3 C 0.054 3.946 4 N -0.546 5.546 5 C 0.208 3.792 6 C -0.519 4.519 7 H 0.059 0.941 8 C 0.003 3.997 9 N -0.935 5.935 10 Si 0.965 3.035 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.270 1.270 14 C 0.067 3.933 15 C -0.093 4.093 16 C -0.004 4.004 17 H 0.112 0.888 18 C -0.146 4.146 19 C -0.014 4.014 20 C -0.219 4.219 21 C -0.222 4.222 22 C -0.035 4.035 23 C -0.072 4.072 24 O -0.193 6.193 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.035 0.965 30 H 0.014 0.986 31 H 0.085 0.915 32 H -0.042 1.042 33 H 0.011 0.989 34 H 0.264 0.736 35 H 0.022 0.978 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.049 0.951 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.161 0.839 43 H 0.168 0.832 44 H 0.092 0.908 45 H 0.075 0.925 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.758 10.901 -17.759 21.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C -0.074 4.074 4 N -0.270 5.270 5 C 0.082 3.918 6 C -0.557 4.557 7 H 0.078 0.922 8 C -0.195 4.195 9 N -0.576 5.576 10 Si 0.789 3.211 11 H -0.192 1.192 12 H -0.208 1.208 13 H -0.195 1.195 14 C -0.061 4.061 15 C -0.131 4.131 16 C -0.022 4.022 17 H 0.130 0.870 18 C -0.203 4.203 19 C -0.064 4.064 20 C -0.238 4.238 21 C -0.240 4.240 22 C -0.085 4.085 23 C -0.128 4.128 24 O -0.090 6.090 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.032 0.968 31 H 0.103 0.897 32 H -0.025 1.025 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.179 0.821 43 H 0.186 0.814 44 H 0.110 0.890 45 H 0.094 0.906 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.400 10.237 -17.939 21.623 hybrid contribution 0.543 0.252 1.250 1.386 sum -5.857 10.488 -16.689 20.563 Atomic orbital electron populations 1.21671 0.93616 1.02287 1.02092 1.21471 0.96654 0.96195 1.01201 1.22203 0.88026 0.97297 0.99840 1.62052 1.06949 1.27039 1.30979 1.19397 0.94921 0.92953 0.84507 1.21435 0.97708 1.40312 0.96244 0.92236 1.25863 1.02868 0.95983 0.94785 1.70075 1.38979 1.46774 1.01784 0.85506 0.79337 0.78905 0.77306 1.19169 1.20820 1.19539 1.21999 1.00259 0.88809 0.95034 1.21520 1.00700 0.95624 0.95256 1.19768 0.96830 0.98273 0.87366 0.87016 1.21856 0.93662 1.02252 1.02541 1.22548 1.02279 0.93744 0.87796 1.21871 1.04492 1.00764 0.96628 1.21861 1.06571 1.00403 0.95204 1.23221 0.99431 0.95352 0.90453 1.20456 1.05148 1.02504 0.84702 1.83957 1.60955 1.48476 1.15649 0.91777 0.92966 0.91404 0.92083 0.94588 0.96754 0.89719 1.02455 0.97118 0.92763 0.95996 0.91582 0.92420 0.91539 0.93161 0.91312 0.91688 0.82120 0.81409 0.88995 0.90622 0.87320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.91 71.98 0.71 -2.96 16 2 C -0.12 -4.14 6.01 30.59 0.18 -3.96 16 3 C 0.05 2.01 4.83 86.30 0.42 2.43 16 4 N -0.55 -24.17 4.38 -900.80 -3.95 -28.12 16 5 C 0.21 11.35 4.59 85.56 0.39 11.74 16 6 C -0.52 -29.98 8.61 25.60 0.22 -29.76 16 7 H 0.06 3.39 7.66 -2.91 -0.02 3.37 16 8 C 0.00 0.16 5.46 84.65 0.46 0.62 16 9 N -0.94 -57.10 13.29 21.44 0.28 -56.82 16 10 Si 0.96 45.01 29.54 68.60 2.03 47.03 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 14 C 0.07 2.56 4.54 86.30 0.39 2.95 16 15 C -0.09 -2.91 4.63 30.59 0.14 -2.77 16 16 C 0.00 -0.10 2.79 -11.54 -0.03 -0.13 16 17 H 0.11 2.58 8.10 -2.39 -0.02 2.56 16 18 C -0.15 -3.87 8.93 71.98 0.64 -3.23 16 19 C -0.01 -0.37 5.83 24.83 0.14 -0.22 16 20 C -0.22 -5.07 10.78 22.19 0.24 -4.83 16 21 C -0.22 -4.63 10.81 22.19 0.24 -4.39 16 22 C -0.03 -0.78 7.32 24.84 0.18 -0.60 16 23 C -0.07 -0.97 10.42 71.24 0.74 -0.23 16 24 O -0.19 -5.45 10.65 -2.42 -0.03 -5.47 16 25 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 29 H 0.04 1.49 6.53 -2.39 -0.02 1.47 16 30 H 0.01 0.55 8.05 -2.39 -0.02 0.53 16 31 H 0.08 2.71 5.94 -2.39 -0.01 2.69 16 32 H -0.04 -2.49 8.00 -2.39 -0.02 -2.50 16 33 H 0.01 0.63 6.24 -2.39 -0.01 0.62 16 34 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.02 0.82 8.12 -2.39 -0.02 0.80 16 36 H 0.07 2.77 5.75 -2.38 -0.01 2.75 16 37 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.07 1.98 6.28 -2.38 -0.01 1.96 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 1.84 6.56 -2.39 -0.02 1.82 16 42 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 43 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 44 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -67.65 367.70 4.34 -63.31 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.92 Total: 15.41 kcal Atomic # 6 Polarization: -40.41 SS G_CDS: 5.08 Total: -35.33 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -3.66 Total: -84.94 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.03 Total: -5.47 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -67.65 4.34 -63.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208158329.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.071 kcal (2) G-P(sol) polarization free energy of solvation -67.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds