Wall clock time and date at job start Tue Mar 31 2020 02:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47194 * 2 1 4 4 N 1.46898 * 109.47423 * 179.54106 * 3 2 1 5 5 C 1.46899 * 111.00217 * 288.00845 * 4 3 2 6 6 C 1.50694 * 109.47295 * 160.35577 * 5 4 3 7 7 H 1.08000 * 120.00243 * 4.65214 * 6 5 4 8 8 C 1.37884 * 120.00082 * 184.65940 * 6 5 4 9 9 N 1.31513 * 119.99587 * 0.02562 * 8 6 5 10 10 Si 1.86789 * 120.00086 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47512 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47282 * 119.99752 * 10 8 6 13 13 H 1.48503 * 109.47324 * 240.00079 * 10 8 6 14 14 C 1.46897 * 111.00144 * 164.05284 * 4 3 2 15 15 C 1.52998 * 109.47174 * 293.95591 * 14 4 3 16 16 C 1.53009 * 109.47033 * 180.02562 * 15 14 4 17 17 H 1.09000 * 109.47041 * 54.99961 * 16 15 14 18 18 C 1.53000 * 109.46822 * 294.99723 * 16 15 14 19 19 C 1.50703 * 109.46883 * 174.99862 * 16 15 14 20 20 C 1.34516 * 125.78720 * 239.71366 * 19 16 15 21 21 C 1.41384 * 106.83617 * 179.89371 * 20 19 16 22 22 C 1.34515 * 106.84326 * 0.36901 * 21 20 19 23 23 C 1.50697 * 125.78966 * 179.75109 * 22 21 20 24 24 O 1.34300 * 125.78782 * 60.02590 * 19 16 15 25 25 H 1.09005 * 109.46854 * 299.99269 * 1 2 3 26 26 H 1.09003 * 109.47628 * 59.99693 * 1 2 3 27 27 H 1.09000 * 109.47257 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46754 * 240.00193 * 2 1 3 29 29 H 1.08997 * 109.47286 * 120.00525 * 2 1 3 30 30 H 1.09006 * 109.47428 * 59.54161 * 3 2 1 31 31 H 1.09001 * 109.47169 * 299.54403 * 3 2 1 32 32 H 1.09002 * 109.47285 * 280.35880 * 5 4 3 33 33 H 1.09004 * 109.46868 * 40.35356 * 5 4 3 34 34 H 0.97002 * 120.00037 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.47154 * 173.95540 * 14 4 3 36 36 H 1.09002 * 109.47035 * 53.95689 * 14 4 3 37 37 H 1.08997 * 109.47513 * 60.00288 * 15 14 4 38 38 H 1.09002 * 109.47220 * 299.99984 * 15 14 4 39 39 H 1.08996 * 109.47021 * 299.99876 * 18 16 15 40 40 H 1.08996 * 109.46986 * 60.00399 * 18 16 15 41 41 H 1.09006 * 109.46574 * 180.02562 * 18 16 15 42 42 H 1.07995 * 126.57821 * 0.02972 * 20 19 16 43 43 H 1.08002 * 126.57945 * 180.12619 * 21 20 19 44 44 H 1.08998 * 109.47280 * 180.02562 * 23 22 21 45 45 H 1.09005 * 109.47356 * 300.00478 * 23 22 21 46 46 H 1.09002 * 109.47404 * 60.00121 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5089 1.4425 0.0111 5 6 4.0255 1.0220 1.3204 6 6 5.4559 0.5707 1.1747 7 1 5.9573 0.6641 0.2227 8 6 6.1245 0.0384 2.2567 9 7 5.5137 -0.0759 3.4157 10 14 7.8973 -0.5216 2.0759 11 1 8.3506 -0.2878 0.6812 12 1 8.7573 0.2476 3.0108 13 1 7.9938 -1.9694 2.3920 14 6 4.0382 2.7601 -0.3652 15 6 3.6852 3.0537 -1.8247 16 6 4.2370 4.4259 -2.2168 17 1 5.3074 4.4586 -2.0135 18 6 3.5297 5.5115 -1.4031 19 6 3.9972 4.6626 -3.6857 20 6 4.9469 4.8870 -4.6116 21 6 4.2820 5.0522 -5.8484 22 6 2.9654 4.9270 -5.6029 23 6 1.8641 5.0339 -6.6260 24 8 2.7988 4.6912 -4.2912 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6700 1.9587 0.8859 31 1 1.6833 1.9539 -0.8941 32 1 3.9780 1.8599 2.0159 33 1 3.4217 0.1986 1.7018 34 1 5.9842 -0.4500 4.1771 35 1 5.1216 2.7642 -0.2456 36 1 3.5990 3.5247 0.2757 37 1 2.6018 3.0497 -1.9444 38 1 4.1244 2.2892 -2.4656 39 1 2.4594 5.4786 -1.6065 40 1 3.7032 5.3402 -0.3408 41 1 3.9226 6.4890 -1.6828 42 1 6.0127 4.9302 -4.4430 43 1 4.7426 5.2460 -6.8059 44 1 0.9000 4.8897 -6.1384 45 1 1.8928 6.0203 -7.0891 46 1 2.0029 4.2695 -7.3905 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208158330.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:32 Heat of formation + Delta-G solvation = -10.799478 kcal Electronic energy + Delta-G solvation = -22029.150449 eV Core-core repulsion = 18919.585423 eV Total energy + Delta-G solvation = -3109.565026 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.56491 -37.67569 -35.42961 -33.13846 -33.02638 -32.22646 -31.29192 -28.52112 -26.97019 -26.55765 -24.79650 -23.12222 -21.78913 -21.54993 -20.81554 -19.76355 -19.36146 -16.62135 -16.28039 -16.13472 -15.00290 -14.84456 -14.77810 -14.34670 -14.06300 -13.76283 -13.43707 -13.24073 -13.08467 -12.98825 -12.76431 -12.59781 -12.31937 -12.13672 -11.94532 -11.78683 -11.43432 -11.38944 -11.09266 -10.87964 -10.77230 -10.65119 -10.50341 -10.40771 -10.14700 -9.98895 -9.82463 -9.49914 -9.14517 -8.38357 -8.20218 -7.16878 -5.98679 -3.99208 1.75692 2.64418 2.93695 3.32943 3.40482 3.45607 4.44990 4.54815 4.76675 4.92507 5.03370 5.05736 5.23587 5.25493 5.29582 5.36964 5.43620 5.50580 5.55536 5.60937 5.65686 5.79373 5.83856 5.90516 5.92513 6.01536 6.06931 6.09436 6.10412 6.19126 6.27928 6.33091 6.36917 6.43260 6.57518 6.65430 6.73358 6.78175 6.89871 7.24361 7.31369 7.39793 7.87430 8.18220 8.29147 8.60863 9.09057 9.64668 11.11980 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015116 B = 0.004135 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.947634 B = 6769.298636 C = 7949.863855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.054 3.946 4 N -0.537 5.537 5 C 0.191 3.809 6 C -0.501 4.501 7 H 0.063 0.937 8 C 0.053 3.947 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.065 3.935 15 C -0.110 4.110 16 C -0.011 4.011 17 H 0.101 0.899 18 C -0.148 4.148 19 C 0.011 3.989 20 C -0.217 4.217 21 C -0.211 4.211 22 C -0.028 4.028 23 C -0.071 4.071 24 O -0.171 6.171 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.020 0.980 31 H 0.059 0.941 32 H -0.013 1.013 33 H 0.036 0.964 34 H 0.260 0.740 35 H 0.081 0.919 36 H 0.022 0.978 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.170 10.393 -15.467 19.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.074 4.074 4 N -0.261 5.261 5 C 0.066 3.934 6 C -0.540 4.540 7 H 0.081 0.919 8 C -0.147 4.147 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.064 4.064 15 C -0.148 4.148 16 C -0.030 4.030 17 H 0.120 0.880 18 C -0.205 4.205 19 C -0.039 4.039 20 C -0.236 4.236 21 C -0.230 4.230 22 C -0.078 4.078 23 C -0.128 4.128 24 O -0.067 6.067 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.005 0.995 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.040 0.960 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.164 0.836 43 H 0.161 0.839 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.256 9.945 -15.482 19.780 hybrid contribution 0.972 0.246 0.519 1.129 sum -6.284 10.191 -14.963 19.164 Atomic orbital electron populations 1.21742 0.96825 1.00975 1.01010 1.21502 0.93866 0.97351 1.03035 1.22090 0.90010 0.96309 0.99003 1.62092 1.04885 1.25221 1.33900 1.19779 0.95732 0.94939 0.82955 1.21223 0.96622 1.39876 0.96250 0.91905 1.24988 0.98336 0.96123 0.95279 1.69968 1.36905 1.46168 1.00993 0.86482 0.84798 0.78290 0.78093 1.19670 1.21196 1.21083 1.21991 1.01227 0.90123 0.93014 1.21716 1.00813 0.94210 0.98077 1.19877 1.01839 0.96841 0.84469 0.88045 1.21897 1.00585 0.97494 1.00563 1.22549 0.81889 1.03751 0.95723 1.21566 1.00280 1.09436 0.92333 1.21497 0.92900 1.09234 0.99381 1.22366 0.96465 1.06259 0.82690 1.20251 0.94978 1.03081 0.94446 1.83954 1.32735 1.69942 1.20093 0.93236 0.93371 0.93117 0.91731 0.91313 0.96227 0.92251 0.99527 0.94618 0.93080 0.90097 0.96001 0.91964 0.91007 0.92441 0.91039 0.92720 0.83640 0.83874 0.90741 0.90035 0.89918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 37.16 0.37 -1.70 16 2 C -0.12 -2.10 6.01 -26.74 -0.16 -2.26 16 3 C 0.05 1.01 4.83 -3.83 -0.02 0.99 16 4 N -0.54 -11.56 4.38 -236.08 -1.03 -12.59 16 5 C 0.19 4.97 4.59 -4.98 -0.02 4.94 16 6 C -0.50 -14.09 8.61 -34.44 -0.30 -14.38 16 7 H 0.06 1.76 7.66 -52.49 -0.40 1.36 16 8 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 9 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 10 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.06 1.21 4.54 -3.83 -0.02 1.20 16 15 C -0.11 -1.74 4.63 -26.73 -0.12 -1.86 16 16 C -0.01 -0.15 2.79 -91.77 -0.26 -0.41 16 17 H 0.10 1.30 8.10 -51.93 -0.42 0.88 16 18 C -0.15 -1.83 8.93 37.16 0.33 -1.50 16 19 C 0.01 0.16 5.83 -35.62 -0.21 -0.05 16 20 C -0.22 -2.83 10.78 -39.70 -0.43 -3.25 16 21 C -0.21 -2.51 10.81 -39.70 -0.43 -2.94 16 22 C -0.03 -0.33 7.32 -35.63 -0.26 -0.59 16 23 C -0.07 -0.55 10.42 36.00 0.38 -0.18 16 24 O -0.17 -2.43 10.65 5.71 0.06 -2.37 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.07 1.37 6.53 -51.93 -0.34 1.03 16 30 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 31 H 0.06 0.99 5.94 -51.93 -0.31 0.69 16 32 H -0.01 -0.36 8.00 -51.93 -0.42 -0.78 16 33 H 0.04 0.99 6.24 -51.93 -0.32 0.67 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.08 1.64 7.32 -51.93 -0.38 1.26 16 36 H 0.02 0.40 6.55 -51.93 -0.34 0.06 16 37 H 0.06 0.98 6.28 -51.93 -0.33 0.65 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.89 6.57 -51.93 -0.34 0.55 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 367.70 15.07 5.54 5.54 Total: -1.00 -30.80 367.70 -9.18 -39.98 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -8.22 Total: -0.62 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -1.24 Total: -20.57 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: -0.30 Total: -38.69 kcal Atomic # 8 Polarization: -2.43 SS G_CDS: 0.06 Total: -2.37 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.80 -9.18 -39.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208158330.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.181 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds